BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G49448.1 Length=907 Score E Sequences producing significant alignments: (Bits) Value Ahg495000 jgi|Araly1|495000|fgenesh2_kg.8__816__AT5G49448.1 828 0.0 > Ahg495000 jgi|Araly1|495000|fgenesh2_kg.8__816__AT5G49448.1 Length=721 Score = 828 bits (448), Expect = 0.0 Identities = 671/767 (87%), Gaps = 62/767 (8%) Strand=Plus/Plus Query 4 TCCCACTTTCCTTATTTTCGatcttatccttatcttcttccttgttctatttctcttcta 63 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | | Sbjct 1 TCCCACTTTCCTTATTTTCGATCTTATCCTTATCTTCTTGCTTGTTCTATTTCTC-T-T- 57 Query 64 actaatctcttctcttctcttaaaatcaaacgtaatcataaataaagatcttcttGTTTA 123 |||| | | ||||| || ||||||||||| ||||| ||||||| Sbjct 58 -CTAA-------------C-T--AATCACACCTAATCATAAAT----ATCTTATTGTTTA 96 Query 124 ATTTCTCTTGATCCTCG-CAAAATCACAGATTCTTGAAATTCTTTTTTCTTGTCTTGAAA 182 ||||||| |||| ||| | ||||||||||||||||||| | || | Sbjct 97 ATTTCTCAAGATCTTCGTC-AAATCACAGATTCTTGAAA-----------T-TC-T---- 138 Query 183 TTCTTGAGTTCTTGAGTTATGAAAAGACAATGGACAGAGTTATGAAATGATAAATCTCAA 242 || || |||||||||||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 139 TT-TT-AGTTCTTGAGTTATGAAATGACAATGGAGAGAGTTATGAAATGATAAATCTCAA 196 Query 243 -C------CA--ATTCCTTGTTTATCATTCTATATCAGTTGTGATTCTTCATTGGTTTTA 293 | || |||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 197 CCAATTTTCACGATTCCTTGTTTATCATTCTATATCCGTTGTGATTCTTCACTGGTTTTA 256 Query 294 CGTTATCTCTT-GAACaaaaaaaCATGGCAAACGCAGAGAAGACAAGTTCAGGTTCCGAC 352 ||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct 257 CGTTATCTCTTAAAACAGAAAAACATGGCAAACGCAGAGAGGACAAGTTCAGGTTCCGAC 316 Query 353 ATAGATGAGAAGAAAAGAAAACGCAAGTTATCAAACCGCGAATCTGCAAGGAGGTCGCGT 412 || ||||||||||||||||||||||| ||||||||||||||||| || |||||||||||| Sbjct 317 ATGGATGAGAAGAAAAGAAAACGCAAATTATCAAACCGCGAATCAGCTAGGAGGTCGCGT 376 Query 413 TTGAAGAAACAGAAGTTAATGGAAGACACGATTCATGAGATCTCCAGTCTTGAACGACGA 472 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 377 TTGAAGAAACAGAAGTTAATGGAAGACACGATTCATGAGATCTCGAGTCTTGAACGACGA 436 Query 473 ATCAAAGAGAACAGTGAGAGATGTCGAGCTGTAAAACAGAGGCTTGACTCGGTCGAAACG 532 |||||||||||||| ||||||||||| | ||| |||||||||||||||||||||||| || Sbjct 437 ATCAAAGAGAACAGCGAGAGATGTCGTGTTGTGAAACAGAGGCTTGACTCGGTCGAATCG 496 Query 533 GAGAACGCGGGTCTTA-GATCGGAGAAGATTTGGCTCTCGAGTTACGTTAGCGATTTAGA 591 |||||||||| ||||| | ||||||||||||||||| |||| |||||||||||||||||| Sbjct 497 GAGAACGCGGTTCTTAAG-TCGGAGAAGATTTGGCTTTCGAATTACGTTAGCGATTTAGA 555 Query 592 GAATATGATTGCTACGACGAGTTTAACGCTGACGCAGA--G-TGGTGGTGGCGATTGTG- 647 ||||||||||||||||||||||||||| |||||||||| | ||||||||||||||| | Sbjct 556 GAATATGATTGCTACGACGAGTTTAACTCTGACGCAGAATGGTGGTGGTGGCGATTGCGG 615 Query 648 TCGACGATCAGAACGCAAACGCGGGAATAGCGGTTGGAGATTGTAGACGTACACCGTGGA 707 | || ||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 616 T-GATGATCAGAACGCAAACGCGGAAATAGCGGTTGGAGATTGTAGACGTAGACCGTGGA 674 Query 708 AATTGAGTTGTGGTTCTCTACAACCAATGGCGTCCTTTAAGACATGA 754 |||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct 675 AATTGAGTTGTGATTCTCTACAACCAATCGCGTCCTTTAAGACATGA 721 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33624412794 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5