BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49448.1
Length=907
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495000 jgi|Araly1|495000|fgenesh2_kg.8__816__AT5G49448.1 828 0.0
> Ahg495000 jgi|Araly1|495000|fgenesh2_kg.8__816__AT5G49448.1
Length=721
Score = 828 bits (448), Expect = 0.0
Identities = 671/767 (87%), Gaps = 62/767 (8%)
Strand=Plus/Plus
Query 4 TCCCACTTTCCTTATTTTCGatcttatccttatcttcttccttgttctatttctcttcta 63
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
Sbjct 1 TCCCACTTTCCTTATTTTCGATCTTATCCTTATCTTCTTGCTTGTTCTATTTCTC-T-T- 57
Query 64 actaatctcttctcttctcttaaaatcaaacgtaatcataaataaagatcttcttGTTTA 123
|||| | | ||||| || ||||||||||| ||||| |||||||
Sbjct 58 -CTAA-------------C-T--AATCACACCTAATCATAAAT----ATCTTATTGTTTA 96
Query 124 ATTTCTCTTGATCCTCG-CAAAATCACAGATTCTTGAAATTCTTTTTTCTTGTCTTGAAA 182
||||||| |||| ||| | ||||||||||||||||||| | || |
Sbjct 97 ATTTCTCAAGATCTTCGTC-AAATCACAGATTCTTGAAA-----------T-TC-T---- 138
Query 183 TTCTTGAGTTCTTGAGTTATGAAAAGACAATGGACAGAGTTATGAAATGATAAATCTCAA 242
|| || |||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 139 TT-TT-AGTTCTTGAGTTATGAAATGACAATGGAGAGAGTTATGAAATGATAAATCTCAA 196
Query 243 -C------CA--ATTCCTTGTTTATCATTCTATATCAGTTGTGATTCTTCATTGGTTTTA 293
| || |||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 197 CCAATTTTCACGATTCCTTGTTTATCATTCTATATCCGTTGTGATTCTTCACTGGTTTTA 256
Query 294 CGTTATCTCTT-GAACaaaaaaaCATGGCAAACGCAGAGAAGACAAGTTCAGGTTCCGAC 352
||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 257 CGTTATCTCTTAAAACAGAAAAACATGGCAAACGCAGAGAGGACAAGTTCAGGTTCCGAC 316
Query 353 ATAGATGAGAAGAAAAGAAAACGCAAGTTATCAAACCGCGAATCTGCAAGGAGGTCGCGT 412
|| ||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 317 ATGGATGAGAAGAAAAGAAAACGCAAATTATCAAACCGCGAATCAGCTAGGAGGTCGCGT 376
Query 413 TTGAAGAAACAGAAGTTAATGGAAGACACGATTCATGAGATCTCCAGTCTTGAACGACGA 472
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 377 TTGAAGAAACAGAAGTTAATGGAAGACACGATTCATGAGATCTCGAGTCTTGAACGACGA 436
Query 473 ATCAAAGAGAACAGTGAGAGATGTCGAGCTGTAAAACAGAGGCTTGACTCGGTCGAAACG 532
|||||||||||||| ||||||||||| | ||| |||||||||||||||||||||||| ||
Sbjct 437 ATCAAAGAGAACAGCGAGAGATGTCGTGTTGTGAAACAGAGGCTTGACTCGGTCGAATCG 496
Query 533 GAGAACGCGGGTCTTA-GATCGGAGAAGATTTGGCTCTCGAGTTACGTTAGCGATTTAGA 591
|||||||||| ||||| | ||||||||||||||||| |||| ||||||||||||||||||
Sbjct 497 GAGAACGCGGTTCTTAAG-TCGGAGAAGATTTGGCTTTCGAATTACGTTAGCGATTTAGA 555
Query 592 GAATATGATTGCTACGACGAGTTTAACGCTGACGCAGA--G-TGGTGGTGGCGATTGTG- 647
||||||||||||||||||||||||||| |||||||||| | ||||||||||||||| |
Sbjct 556 GAATATGATTGCTACGACGAGTTTAACTCTGACGCAGAATGGTGGTGGTGGCGATTGCGG 615
Query 648 TCGACGATCAGAACGCAAACGCGGGAATAGCGGTTGGAGATTGTAGACGTACACCGTGGA 707
| || ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 616 T-GATGATCAGAACGCAAACGCGGAAATAGCGGTTGGAGATTGTAGACGTAGACCGTGGA 674
Query 708 AATTGAGTTGTGGTTCTCTACAACCAATGGCGTCCTTTAAGACATGA 754
|||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 675 AATTGAGTTGTGATTCTCTACAACCAATCGCGTCCTTTAAGACATGA 721
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33624412794
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5