BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G49465.1 Length=2350 Score E Sequences producing significant alignments: (Bits) Value Ahg322539 jgi|Araly1|322539|fgenesh1_pm.C_scaffold_5000083 100 4e-20 > Ahg322539 jgi|Araly1|322539|fgenesh1_pm.C_scaffold_5000083 Length=234 Score = 100 bits (54), Expect = 4e-20 Identities = 64/69 (93%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 204 CGAAGAAGATAAACGGTAGGAGATCGAACCGGACAGAAGCGAAAGCAACCACCATACCTG 263 |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| Sbjct 93 CGAAGAAGATAAACGGCAGGAGATCGAACCGGACAGAAGCGAAAGCAACCACCACGCCTT 34 Query 264 GTAATAGGC 272 |||| |||| Sbjct 33 GTAAGAGGC 25 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88521729380 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5