BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49480.1
Length=896
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495005 jgi|Araly1|495005|fgenesh2_kg.8__821__AT5G49480.1 1040 0.0
> Ahg495005 jgi|Araly1|495005|fgenesh2_kg.8__821__AT5G49480.1
Length=699
Score = 1040 bits (563), Expect = 0.0
Identities = 660/704 (94%), Gaps = 18/704 (3%)
Strand=Plus/Plus
Query 11 AAAGCTTCCTTCACAATCTCAAAAGCCATTTTTCAAATTTC---AAACTCagagaga--g 65
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 1 AAAGCTTCCTTCACAATCTCAAAAGCCA-TTTTCAAATTTCAAAAAACTCAGAGAGATCA 59
Query 66 agagaTGTGTCCTTCTGGTAGAATCGCGATTCCGATAACCACCACCGCGAATCCAAATTT 125
|| |||||||||||| |||||||||||||||||||||||||||||||||||| || ||||
Sbjct 60 AGCGATGTGTCCTTCCGGTAGAATCGCGATTCCGATAACCACCACCGCGAATTCAGATTT 119
Query 126 CCGACCAGCTTTCGAAATCATCGACACAGATCACGACGGTAAAATCAGCAGCGACGATCT 185
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CCGTCCAGCTTTCGAAATCATCGACACAGATCACGACGGTAAAATCAGCAGCGACGATCT 179
Query 186 CCGTGCATTCTACGCCGGAATCCCTTCCGGTGAAAACAACGACGAGACGATGATCGGAAC 245
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 180 CCGTGCATTCTACGCCGGAATCACTTCCGGTGAAAACAACGACGAGGCGATGATCGGAAC 239
Query 246 GATGATATCAGTAGCGGACGCGAACAAAGACGGATTCGTTGAGTTCGATGAATTCGAGAA 305
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 GATGATATCAGTAGCGGACGCGAACAAAGACGGATTCGTTGAGTTCGATGAGTTCGAGAA 299
Query 306 AGTTCTAGAAACGACGCCG-T-TT-TCTAGATCTGGTAACGGAGGAGACGATGGATTGAT 362
||||||||||||| ||||| | || | |||||||||||||||||||||||||||||||||
Sbjct 300 AGTTCTAGAAACGGCGCCGTTGTTGTGTAGATCTGGTAACGGAGGAGACGATGGATTGAT 359
Query 363 GAAAGATGTGTTTAAGGTGATGGATAAAGACGGAGATGGGAGACTGAGTTACGGAGATCT 422
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 360 GAAAGATGTGTTTAAGGTGATGGATAAAGACGGAGATGGGAGATTGAGTTACGGAGATCT 419
Query 423 GAAGAGTTATATGGATTCGGCTGGTTTAGCTG-TAACCGACGATGAAATCAAATCTATGA 481
||| |||||||||||||||||||||||||||| | |||| |||||||||||| ||||||
Sbjct 420 GAAAAGTTATATGGATTCGGCTGGTTTAGCTGCTT-CCGATGATGAAATCAAAGCTATGA 478
Query 482 TTCGATTAGCCGGTGGTGATTTAAACGACGGCGTTTCGTTCGACGGTCTGCTTAAGATCT 541
|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
Sbjct 479 TTCGATTAGCCGGTGGTGATTTAAACGACGGCGTTTCGTTTGACGGTTTGCTTAAGATTT 538
Query 542 TTGGGTGTTGaaaaaaaaaGTTCGttttttttgacaccgcacattttccaactttattt- 600
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 539 TTGGGTGTTGAAAAAAAAA-TT-GTTTTTTTTGACACCGCACATTTTCCAACTTTATTTA 596
Query 601 tgttt-ctcagttttgtttgtttgtttgcagaagtgtatttgtgtccacccagattttgt 659
| | || |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TCTCAGCTTTGTTT-GTTTGTTTGTTTGCAGAAGTGTATTTGTGTCCACCCAGATTTTGT 655
Query 660 tttat--gttgttATAAAAATGTGAGAAAACTAATGTTGGAACA 701
||| | ||||||||||||||||||||||| |||||||||||||
Sbjct 656 TTTCTCTGTTGTTATAAAAATGTGAGAAAATTAATGTTGGAACA 699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33205060707
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5