BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49510.1
Length=1009
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495010 jgi|Araly1|495010|fgenesh2_kg.8__826__AT5G49510.2 1144 0.0
> Ahg495010 jgi|Araly1|495010|fgenesh2_kg.8__826__AT5G49510.2
Length=877
Score = 1144 bits (619), Expect = 0.0
Identities = 688/719 (96%), Gaps = 13/719 (2%)
Strand=Plus/Plus
Query 27 AGTCGTCAGATTCGAAAAAC-ATAC-A-AAACCAAGTCGAAGCTTTTAAAACCCTAAATC 83
||||| |||||||| ||||| || | | ||||||||||||||||||||||||||||||||
Sbjct 1 AGTCGACAGATTCG-AAAACAAT-CGAGAAACCAAGTCGAAGCTTTTAAAACCCTAAATC 58
Query 84 CCCAAATCGGGAACTGAGATTCCGATTCGAAGATGTCGTCGTCTTCTCCGAGTGGAAGCG 143
|||||||| | || | ||||||||||||||||| ||||||||||||||||||||||
Sbjct 59 CCCAAATC--G----GA-A-TCCGATTCGAAGATGTCTTCGTCTTCTCCGAGTGGAAGCG 110
Query 144 GTAGTGATTTGACTGAGAGAAGAGGGATCCCTGCCGCCAAATTCATCCAAGATGTGGAGA 203
|||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 111 GTAGCGATTTGACTGAGAGAAGAGGAATCCCTGCCGCCAAATTCATTCAAGATGTGGAGA 170
Query 204 CTTATCTCTCTCAGTCTGGTCTCGATCCTAACTCTGCTCTCGCCTTTCACCAAGAAAGGC 263
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 171 CTTATCTCTCTCAGTCTGGTCTCGATCCTAACTCTGCTCTCGCCTTCCATCAAGAAAGGC 230
Query 264 TTCAGCAATATAAAGTTGTTGAGATGAAGCTTCTTGCTCAACAAAGGGATCTTCAGGCTA 323
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 231 TTCAGCAATATAAAGTTGTTGAGATGAAGCTTCTTGCTCAACAAAGAGATCTTCAGGCTA 290
Query 324 AAATCCCAGATATTGAAAAGTGTTTAGAGGTTGTTGCTACTTTGGAAGCAAAGAAGGGTA 383
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 291 AAATCCCAGATATTGAGAAGTGTTTAGAGGTTGTTGCTACTTTGGAAGCAAGGAAGGGTA 350
Query 384 CTGGTGAGGCGCTCTTAGCTGATTTTGAGGTGTCTGAAGGAATATATTCACGGGCCTGCA 443
||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 351 CTGGTGAGGCGCTTTTAGCCGATTTTGAGGTGTCTGAAGGAATTTATTCACGGGCCTGCA 410
Query 444 TTGAAGACACAGACTCAGTGTGTTTGTGGTTGGGAGCTAATGTCATGCTGGAATATTCCT 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 TTGAAGACACAGACTCAGTGTGTTTGTGGTTGGGAGCTAATGTCATGCTGGAATATTCCT 470
Query 504 GTGAAGAGGCTTCAGCTCTTCTGAAAAACAATCTGGAAAATGCTAAAGCCAGCCTGGAGG 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 GTGAAGAGGCTTCAGCTCTTCTGAAAAACAATCTGGAAAATGCTAAAGCCAGCCTGGAGG 530
Query 564 TTCTTGTAGCTGATTTACAGTTCTTGAGGGATCAAGTCACAGTTACTCAGGTAACTATTG 623
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 531 TTCTCGTAGCTGATTTACAGTTCTTAAGGGATCAAGTCACAGTTACTCAGGTAACTATTG 590
Query 624 CACGTGTTTATAACTGGGATGTTCATCAAAGGAGGGTTAAACAAGTTACCCCTACTGCTA 683
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 CGCGTGTTTATAACTGGGATGTTCATCAAAGGAGGGTTAAACAAGTTACCCCTACTGCTA 650
Query 684 TTGCTGTTGCAGATTCATGAACTAGAGATCCAAATTATAATCGTGTGGGCTTAAACGAG 742
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 651 TTGCTGCTGCAGATTCATGAACTACAGATCCAAATTATAATCGTGTGGGCTTAAACGAG 709
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37512950328
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5