BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49520.1
Length=1793
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949445 jgi|Araly1|949445|scaffold_801332.1 1967 0.0
Ahg921263 jgi|Araly1|921263|scaffold_102544.1 636 0.0
> Ahg949445 jgi|Araly1|949445|scaffold_801332.1
Length=1231
Score = 1967 bits (1065), Expect = 0.0
Identities = 1191/1248 (95%), Gaps = 23/1248 (2%)
Strand=Plus/Plus
Query 93 GATTCCATCTTTTCTCTATTACATGGAGAAGAAAAAAGAAGAGGATCATCATCATcaa-c 151
||||||||| ||| |||||||||||||||| || ||||||||||||||||||||| || |
Sbjct 1 GATTCCATC-TTT-TCTATTACATGGAGAATAAGAAAGAAGAGGATCATCATCAT-AATC 57
Query 152 aacaacaacaacaacaaaaggagatcaagaacacagagacaaagatcgagcaagaacaag 211
||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 58 TACAACAACAACAACAAAAGGAGATCAAGAACACAGAGACAAAGAT----C--GAACAAG 111
Query 212 aacaagaacaaaaacaagaaaTCTCTCAAGCATCATCATCATCAAACATGGCGAATCTAG 271
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 AACAAGAACAGAAACAAGAAATCTCTCAAGCATCATCATCATCAAACATGGCGAATCTAG 171
Query 272 TTACGTCATCAGATCATCATCCGTTGGAGCTAGCTGGAAATCTCTCAAGCATCTTCGATA 331
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 172 TTACGTCATCAGATCATCATCAGTTGGAGCTAGCTGGAAATCTCTCAAGCATCTTCGATA 231
Query 332 CTTCATCTTTACCTTTTCCTTATTCTTATTTCGAAGATCACTCTTCTAATAATCCTAATT 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 232 CTTCATCTTTACCTTTTCCTTATTCTTATTTCGAAGATCACTCTTCTAATAATCCCAATT 291
Query 392 CTTTCCTAGACTTGCTCCGACAAG---ATCATCAGTTTGCTTCTTCCTCTAATTCCTCTT 448
||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 292 CTTTCCTCGACTTGCTCCGACAAGATCATCATCAATTTGCTTCTTCCTCTAATTCCTCTT 351
Query 449 CTTTTTCATTCGATGCCTTTCCTCTCCCCAATAACAACAACAACACCTCtttttttACGG 508
||||||| ||||||||||||||||| ||| ||||||||||||| | ||||||||||
Sbjct 352 CTTTTTCCTTCGATGCCTTTCCTCTTCCC---AACAACAACAACA--AC-TTTTTTACGG 405
Query 509 ATTTGCCCTTACCTCAAGCTGAGTCATCAGAAGTCGTGAACACAACACCGACTTCTCCAA 568
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 406 ATTTGCCCTTGCCTCAAGCTGAGTCATCAGAAGTTGTGAACACAACACCGACTTCTCCAA 465
Query 569 ACTCAACCTCAGTCTCATCTTCCTCCAACGAAGCTGCAAATGATAACAACAGTGGTAAAG 628
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 466 ACTCAACCTCAGTCTCATCTTCCTCTAACGAAGCTGCAAATGATAACAACAGTGGAAAAG 525
Query 629 AAGTTACTGTTAAAGATCAAGAAGAAGGAGATCAACAACAAGAGCAAAAGGGTACTAAGC 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 AAGTTACTGTTAAAGATCAAGAAGAAGGAGATCAACAACAAGAGCAAAAGGGTACTAAGC 585
Query 689 CACAGTTGAAGGCAAAGAAGAAGAATCAAAAGAAAGCTAGAGAAGCTAGGTTTGCGTTTC 748
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 586 CACAGTTGAAGGCAAAGAAGAAGAACCAGAAGAAAGCTAGAGAAGCTAGGTTTGCGTTTC 645
Query 749 TGACGAAGAGCGATATTGATAATCTTGACGACGGTTATAGGTGGAGAAAATACGGCCAAA 808
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 TGACTAAGAGTGATATTGATAATCTTGACGACGGTTATAGGTGGAGAAAATACGGCCAAA 705
Query 809 AAGCTGTCAAAAACAGTCCTTATCCCAGAAGCTATTACCGTTGCACCACAGTGGGTTGCG 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 AAGCTGTCAAAAACAGTCCTTATCCCAGAAGCTATTACCGTTGCACCACAGTGGGTTGCG 765
Query 869 GAGTGAAGAAGAGAGTGGAGAGATCCTCCGATGATCCTTCGATCGTCATGACAACCTACG 928
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 766 GAGTGAAGAAGAGAGTGGAGAGATCCTCCGATGATCCTTCAATCGTCATGACAACCTACG 825
Query 929 AAGGTCAGCATACCCATCCTTTCCCCATGACGCCACGTGGACACATCGGAATGCTCACGT 988
||||||| || || || |||||||||||||||||||||||||||||||||||||| || |
Sbjct 826 AAGGTCAACACACTCACCCTTTCCCCATGACGCCACGTGGACACATCGGAATGCTGACAT 885
Query 989 CACCAATCCTAGACCACGGTGCAACCACCGCGTCATCATCATCATTCTCCATCCCTCAGC 1048
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 CACCAATCCTAGATCACGGTGCAACCACCGCGTCATCATCATCATTCTCCATCCCTCAGC 945
Query 1049 CACGTTACTTGCTGACTCAACATCACCAGCCCTACAACATGTACAACAACAACTCTCTAA 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 CACGTTACTTGCTGACTCAACATCACCAGCCCTACAACATGTACAACAACAACTCTCTAA 1005
Query 1109 GTATGATCAATAGAAGATCATCCGATGGCACTTTCGTAAATCCAG-GTCCATCATCATCA 1167
||||||||||||||| ||||||||||| |||||||||||||||| | ||||||||||||
Sbjct 1006 ATATGATCAATAGAAGCTCATCCGATGGTACTTTCGTAAATCCAGAG-CCATCATCATCA 1064
Query 1168 TTCCCCGGCTTTGGTTATGATATGTCTCAAGCTTCTACTTCAACTTCTTCTTCCATTAGA 1227
|||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1065 TTCCCCGGATTTGGTTATGATATGTCACAAGCTTCTACATCAACTTCTTCTTCCATTAGA 1124
Query 1228 GATCATGGATTGCTTCAAGATATTCTTCCTTCGCAGATCAGATCCGATACTATTAACACT 1287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 GATCATGGATTGCTTCAAGATATTCTTCCTTCGCAGATCAGATCCGATACTATTAACACT 1184
Query 1288 CAAACCAATGAAGAGAATAAGAAATGAAG-AAGttttttttCCCGGGG 1334
||||||||||||||||||||||||||| | || |||||||||||||||
Sbjct 1185 CAAACCAATGAAGAGAATAAGAAATGA-GCAACTTTTTTTTCCCGGGG 1231
> Ahg921263 jgi|Araly1|921263|scaffold_102544.1
Length=400
Score = 636 bits (344), Expect = 0.0
Identities = 376/391 (96%), Gaps = 4/391 (1%)
Strand=Plus/Plus
Query 946 CCTTTCCCCATGACGCCACGTGGACACATCGGAATGCTCACGTCACCAATCCTAGACCAC 1005
|||||||||||||| ||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 12 CCTTTCCCCATGACTCCACGTGGACACATCGGAATGCTGACATCACCAATCCTAGATCAC 71
Query 1006 GGTGCAACCACCGCGTCATCATCATCATTCTCCATCCCTCAGCCACGTTACTTGCTGACT 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 GGTGCAACCACCGCGTCATCATCATCATTCTCCATCCCTCAGCCACGTTACTTGCTGACT 131
Query 1066 CAACATCACCAGCCCTACAACATGTACAACAACAACTCTCTAAGTATGATCAATAGAAGA 1125
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 132 CAACATCACCAGCCCTACAACATGTACAACAACAACTCTCTAAATATGATCAATAGAAGC 191
Query 1126 TCATCCGATGGCACTTTCGTAAATCCAG-GTCCATCATCATCATTCCCCGGCTTTGGTTA 1184
||||||||||| |||||||||||||||| | |||||||||||||||||||| ||||||||
Sbjct 192 TCATCCGATGGTACTTTCGTAAATCCAGAG-CCATCATCATCATTCCCCGGATTTGGTTA 250
Query 1185 TGATATGTCTCAAGCTTCTACTTCAACTTCTTCTTCCATTAGAGATCATGGATTGCTTCA 1244
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 251 TGATATGTCACAAGCTTCTACATCAACTTCTTCTTCCATTAGAGATCATGGATTGCTTCA 310
Query 1245 AGATATTCTTCCTTCGCAGATCAGATCCGATACTATTAACACTCAAACCAATGAAGAGAA 1304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 AGATATTCTTCCTTCGCAGATCAGATCCGATACTATTAACACTCAAACCAATGAAGAGAA 370
Query 1305 TAAGAAATGAAG-AAGttttttttCCCGGGG 1334
|||||||||| | || |||||||||||||||
Sbjct 371 TAAGAAATGA-GCAACTTTTTTTTCCCGGGG 400
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67305462915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5