BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G49525.1

Length=447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg921262 jgi|Araly1|921262|scaffold_102543.1                        424    4e-118
  Ahg949448 jgi|Araly1|949448|scaffold_801335.1                        276    1e-73 


> Ahg921262 jgi|Araly1|921262|scaffold_102543.1
Length=288

 Score =  424 bits (229),  Expect = 4e-118
 Identities = 269/288 (93%), Gaps = 4/288 (1%)
 Strand=Plus/Plus

Query  89   agaagaagagaGCAAAAATTGGTGATGTCAGCTTCCCGATGGACGTTGATGGATCTACCA  148
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| 
Sbjct  1    AGAAGAAGAGAGCAAAACTTGGTGATGTCAGCTTCCCGATGGACGTTGATGGATCTACCG  60

Query  149  TCGTACCTGTCGTCATCGTGGGCATTCCGGTGGCCGGAGGTGAATCTTTCATCCCTGAGC  208
            ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  61   TCGTATCTGTCGTCATCGTGGGCATTCCGGTGGCCGGAGGTGAATCTTTCATACCTGAGC  120

Query  209  TCTGGTTGGAACATGAGATTGTTGTCCTTGTCGGGTGATCTCTCCATAGTTGATGATCTT  268
            |||||||||||||||||||||||||| ||||||||| ||||||||||| | |||||||||
Sbjct  121  TCTGGTTGGAACATGAGATTGTTGTCGTTGTCGGGTAATCTCTCCATAATCGATGATCTT  180

Query  269  TTGTGGAGTTTTGTCTCAATCATTGAATCTTTAGCTATCACTGCTACGGTCTGTTGCTTC  328
            ||||||||||||||||| ||| |||||||||||||||||  | ||||| |||||||||||
Sbjct  181  TTGTGGAGTTTTGTCTCGATCGTTGAATCTTTAGCTATCGTTACTACGATCTGTTGCTTC  240

Query  329  TTCTTGTTTTGTGGTTGTACCCTCTAATTCC--CTTTTTT--CATTAT  372
            ||||||||||||||||||||||| |||||||  |||||||  ||||||
Sbjct  241  TTCTTGTTTTGTGGTTGTACCCTTTAATTCCTTCTTTTTTTTCATTAT  288


> Ahg949448 jgi|Araly1|949448|scaffold_801335.1
Length=296

 Score =  276 bits (149),  Expect = 1e-73
 Identities = 188/206 (91%), Gaps = 5/206 (2%)
 Strand=Plus/Plus

Query  171  CATTCCGGTGGCCGGAGGTGAATCTTTCATCCCTGAGCTCTGGTTGGAACATGAGATTGT  230
            ||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct  92   CATACCGGTGGCCGGA-GTGAATCTTTCATACCTGAGCTCTGGTTGGAACATGAGATTGT  150

Query  231  TGTCCTTGTCGGGTGATCTCTCCATAGTTGATGATCTTTTGTGGAGTTTTGTCTCAATCA  290
            |||| ||||||||| ||||||||||| | |||||||||||||||||||||||||| ||| 
Sbjct  151  TGTCGTTGTCGGGTAATCTCTCCATAATCGATGATCTTTTGTGGAGTTTTGTCTCGATCG  210

Query  291  TTGAATCTTTAGCTATCACTGCTACGGTCTGTTGCTTCTTCTTGTTTTGTGGTTGTACCC  350
            |||||||||||||||||  | ||||| |||||||||||||||||||||||||||||||||
Sbjct  211  TTGAATCTTTAGCTATCGTTACTACGATCTGTTGCTTCTTCTTGTTTTGTGGTTGTACCC  270

Query  351  TCTAATTCC--CTTTTTT--CATTAT  372
            | |||||||  |||||||  ||||||
Sbjct  271  TTTAATTCCTTCTTTTTTTTCATTAT  296


 Score =  163 bits (88),  Expect = 9e-40
 Identities = 92/94 (98%), Gaps = 0/94 (0%)
 Strand=Plus/Plus

Query  107  TTGGTGATGTCAGCTTCCCGATGGACGTTGATGGATCTACCATCGTACCTGTCGTCATCG  166
            ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct  1    TTGGTGATGTCAGCTTCCCGATGGACGTTGATGGATCTACCGTCGTATCTGTCGTCATCG  60

Query  167  TGGGCATTCCGGTGGCCGGAGGTGAATCTTTCAT  200
            ||||||||||||||||||||||||||||||||||
Sbjct  61   TGGGCATTCCGGTGGCCGGAGGTGAATCTTTCAT  94



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16139814147


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5