BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49530.1
Length=2429
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495012 jgi|Araly1|495012|fgenesh2_kg.8__828__AT5G49530.1 2887 0.0
Ahg951922 jgi|Araly1|951922|scaffold_25300001.1 963 0.0
Ahg897673 jgi|Araly1|897673|Al_scaffold_0005_1639 401 1e-110
> Ahg495012 jgi|Araly1|495012|fgenesh2_kg.8__828__AT5G49530.1
Length=2246
Score = 2887 bits (1563), Expect = 0.0
Identities = 2077/2311 (90%), Gaps = 92/2311 (4%)
Strand=Plus/Plus
Query 141 CAGGAAGTAAAAATATGGACTTTGATGATGATGACAAACCAAAAGAGGTTACCAAAACCC 200
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1 CAGGAAGTAAAAATATGGACTTTGATGATGAAGACAAACCAAAAGAGGTTGCCAAAACCC 60
Query 201 GTAGATTCGCTCCTGGCCGTGCCGGAAAGTCTAAACCCAAACCTAAACCGGAACCCACTG 260
||||||||||||||||||||||||||||| | ||||||| ||| ||
Sbjct 61 GTAGATTCGCTCCTGGCCGTGCCGGAAAG--T----------CTAAACC-GAA---AC-- 102
Query 261 CTGATAAACCGGTACAGCCGCCGCCGCAGTCACAAACTGAGTCCGTGAGCAAGACTGAGC 320
| |||||||| | | |||||||| |||||||||||||| |||||||||| |||||
Sbjct 103 C---TAAACCGG-A-A----CCGCCGCAATCACAAACTGAGTCTGTGAGCAAGAGTGAGC 153
Query 321 ATGACGTTGATGCTAAA-TTCGTTGG-CACTAAGGTTGAAACTGAGGTTTGTAATGGCTC 378
||||||||||||||||| | | ||| | ||||||||||||||||||||| |||||||||
Sbjct 154 ATGACGTTGATGCTAAAGGT-GCTGGTC-CTAAGGTTGAAACTGAGGTTTATAATGGCTC 211
Query 379 TGTGAAGATGGAGATCGATTCAAAAGTCGATAAAGAGCCTGAGATCATGGAAACTGAGTT 438
||| || |||||||| ||||||||||| ||||||||||| ||| ||||||| ||||||||
Sbjct 212 TGTTAAAATGGAGATTGATTCAAAAGTGGATAAAGAGCCAGAGTTCATGGATACTGAGTT 271
Query 439 GATGGAGGAAGATCAGCAGCTTCCATTGCaggaggagaaggaggaagaagaagaagaaga 498
||| ||||||||| ||||||||||||||||||| | | | | ||||||||||||| | |
Sbjct 272 GATTGAGGAAGATGAGCAGCTTCCATTGCAGGA-G-G-A--A-GAAGAAGAAGAAG-A-A 323
Query 499 CGACGTTGTTGTTCGTGAAATTGATGTTTTCTTTAAGCCGTC-TATTGATGCTAATACTC 557
|| ||||||||||||||||| |||||||||||||| ||||| | ||||||||||||||
Sbjct 324 -GATGTTGTTGTTCGTGAAATCGATGTTTTCTTTAATCCGTCGT-TTGATGCTAATACTA 381
Query 558 AGCTTTATGTTTTACAATATCCTCTAAGACCATCTTGGCGTCCATACGAAATGGATGAAC 617
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 382 AGCTTTATGTTCTACAATATCCTCTAAGACCGTCTTGGCGTCCATACGAAATGGATGAAC 441
Query 618 GTTGCGAAGAAGTTAGAGTGAATCCTTCTACATCGCAAGTGGAAATTGATTTGTCTATGG 677
| ||||||||||||||||||||| ||||||| || |||||||||||||| ||||||||||
Sbjct 442 GATGCGAAGAAGTTAGAGTGAATACTTCTACCTCCCAAGTGGAAATTGACTTGTCTATGG 501
Query 678 ATGTTCATTCGAAGAACTATGACTCCAATTTTGGACTAAATATGACTAAGCAGACCTTGA 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 ATGTTCATTCGAAGAACTATGACTCCAATTTTGGACTAAATATGACTAAGCAGACCTTGA 561
Query 738 AAACAACATGGAAGCAGCCTCCTACTTTGGATTATGCTGTTGGGGTTCTTTCAGGTGATA 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 AAACAACATGGAAGCAGCCTCCTACTTTGGATTATGCTGTTGGGGTTCTTTCAGGTGATA 621
Query 798 AGTTACACTTGAATCCTGTTCATGCTGTTGCCCAGCTCCGGCCGTCTATGCAGTCTCTTT 857
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 622 AGTTACACTTGAATCCTGTTCATGCTGTTGCTCAGCTCCGGCCGTCTATGCAGTATCTTT 681
Query 858 CATCCGACaa-aaaaaaGAAACAAGAAGAATCCACTGAAGAATCTGTGGGAACATCCAAA 916
||||| || |||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 682 CATCCAACGGCAAAAAA-AAACAAGAAGAATCTACTGAAGAATCTGTCGGAACATCCAAA 740
Query 917 AAGCAGAACAAGGGAGTGCAGCAGGCTTCGACGGATCAGAAACCAATTAATGAAGAAACT 976
|| |||||||||||||||||| | ||||||||||||||||||||||||| |||||||||
Sbjct 741 AAACAGAACAAGGGAGTGCAG--G-CTTCGACGGATCAGAAACCAATTAACGAAGAAACT 797
Query 977 TGGGTTTCACTCAAGTATCATGGACTTCAATCCGAATATTGCTCCAGATATCTTAACGGG 1036
|||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 798 TGGGTTGCACTCAAATATCATGGACTTCAATCCGAATATTGCTCCACATATCTTAACGGG 857
Query 1037 ATGATGGCGAATGGGAACTCTTCGAT-AGATTTCAACATGAGCCCGGGCACTTATATCAA 1095
||||||||||||||||||||||| || |||||||||||||||||||| | |||||||||
Sbjct 858 ATGATGGCGAATGGGAACTCTTC-ATTAGATTTCAACATGAGCCCGGACGTTTATATCAA 916
Query 1096 CGAACTATGCCGTGGGGGAAGCAGCAGAAACTCTGAATCGAAAGAAACATTAAAAAGGGT 1155
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 917 CGAACTGTGCCGTGGGGGAAGCAGCAGAAACTCTGAATCGAAAGAAACATCAAAAAGGGT 976
Query 1156 CTTGCTCTCCCTACCACTTAAAGAACGTGTGCAAAAGTTGCTCTGCGAGGGATCTCCGTT 1215
|||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 977 CTTGCTTTCCCTACCACTTGAAGAACGTGTGAAAAAGTTGCTCTGCGAGGGATCTCCGTT 1036
Query 1216 GATTCGATACAGTGTTCTTAAACACTATGCTCCTGAGTTCTCAGACGAGGATTTCTTAGG 1275
| ||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 1037 GCTTCGATACAGTGTTCTTAAGCATTATGCCCCTGAGTTCTCAGACGAGGATTTCTTAGG 1096
Query 1276 GGCCCTCCAAGAATATGGCAGGTTAGTTCAAGGTTTATGGACTCCTAAAACTAGGCTACT 1335
||||||||||||| ||||| ||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1097 GGCCCTCCAAGAAGATGGCTGGTTAGTTCAAGGTTTATGGACTCCCAAAACTAAGCTACT 1156
Query 1336 AAAACTAGACGGGC-CTGTAGAAGCTGCCAGGGATTATGTCCTGTCTCTGTTCAGCCAGA 1394
||||||| | ||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1157 GGAACTAGATGAAAACTGTAGAAG-TATCAGGGATTATGTCCTGTCTCTGTTCAGCCAGA 1215
Query 1395 ATACAACTATAAAGTACTCTGAAGTTGAAGCAACGGGTGA-CAA-GATGAAACC-T--T- 1448
|||||||||||||||||||||||||||||||||||||| ||| | |||| | |
Sbjct 1216 ATACAACTATAAAGTACTCTGAAGTTGAAGCAACGGGTTTTCAAAGC-GAAAAGATGATA 1274
Query 1449 -TGATGGAAAGA-ATGTTGACTGAATTTGCCAAAGAAAGGCATGTGCTAAAAGATTGGAA 1506
| ||| ||| |||||||| | ||||||||||||||||| | ||||||| ||||||||
Sbjct 1275 ATTATG-AAATCTATGTTGACAGTATTTGCCAAAGAAAGGCCTCTGCTAAACGATTGGAA 1333
Query 1507 GTTCAAAGAGCCCACTGATGTCTCATTCATAAAATCCTACCCGGAGATTGTTAAGGAGCA 1566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1334 GTTCAAAGAGCCCACTGATGTCTCATTCATAAAATCCTACCCGGAGATTGTTAAGGAGCA 1393
Query 1567 AGATATTTTTTGGACGGATAAGAGAGAGAATCTAAAGTCGAGAATAACCGCCCAAGGAGG 1626
||||||||| |||||| ||| || | ||| | || |||| | | ||||| || | | |
Sbjct 1394 AGATATTTTATGGACGAATAGGAAAAAGATTATAGAGTCAATATTAACCACC-A-G-A-- 1448
Query 1627 AAAAAGTAGAGCTGATAAAAGGAGGAATGTTGTTGGCACAAGTTCTTCAGTTACAGTTAA 1686
|||| ||||||||||||| ||||||||||| ||||||| || ||||||||||||||||||
Sbjct 1449 AAAA-GTAGAGCTGATAATAGGAGGAATGTCGTTGGCAAAAATTCTTCAGTTACAGTTAA 1507
Query 1687 ACCGGAGGTTCCAACAACCCTCTCTGACAAAGGAGGAAGTTCAAAAAATACGATACATCG 1746
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||
Sbjct 1508 ACCGGAGGTTCCAACAACCCTCTCGGACAAAGGAGGAAGTTCAAGAAATACGATACCTCG 1567
Query 1747 TGTTGTTACACAAGAAATGCCAGAAGAACTTAAGAAGGCGTTACCAAAGGCTTTGAAAAA 1806
||||||| |||| ||||||||||||||||| | ||||||||||||||| ||||||||
Sbjct 1568 TGTTGTTGGACAAAAAATGCCAGAAGAACTTCGGTGGGCGTTACCAAAGGCCTTGAAAAA 1627
Query 1807 GGTGTTTCAAACTCACAAAGTTTGCCGCTATGAGACGATCTGCCAAGGACTTAGGGATCT 1866
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1628 GGTGTTTCAAACTCACAAAGTTTGCAGGTATGAGACGATCTGCCAAGGACTTAGGGATCT 1687
Query 1867 TGCAGTTTCGACATCGAATAATCCAAAAGCTGATTCAGGAATGGCGGTGAATGTGGCGCT 1926
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1688 TGCAGTTTCGACATCAAATAATCCAAAAGCTGATTCAGGAATGGCAGTGAATGTGGCGTT 1747
Query 1927 AGCCGTGGATGCTTACCAGGGCGAGCTCGAAGACGTTATAAATGGAGTGGCTACTAACAT 1986
|||||||||||||||||||| ||||||| |||||||||||| || ||||||| |||||||
Sbjct 1748 AGCCGTGGATGCTTACCAGGACGAGCTCAAAGACGTTATAAGTGAAGTGGCTGCTAACAT 1807
Query 1987 TCACGGGTCTTATGTCTCCATATCGTCTCCAGACCATCCTGAATATGATTCTTTGAGGGA 2046
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1808 TCACGGGTCTTATGTCTCCATATCATCTCCAGACCATCCTGAATACGATTCTTTGAGGGG 1867
Query 2047 AGTGGTCATTAGCCTCTTAACCGGATCTCCACCTGGAACAAAGCTTATGAAGGCTGAGGT 2106
|||||| |||||||| || |||| || ||||||| ||||||||||||||||||||||
Sbjct 1868 AGTGGTGATTAGCCTTTTTTGCGGAACTGGACCTGGAGCAAAGCTTATGAAGGCTGAGGT 1927
Query 2107 ATTTGCAGCAGGCAGGACCAAACTTGAA-CGTGAAATCACCAACAACGAATATATAAAGG 2165
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1928 ATTTGCAGCAGGCAGGACCAAACTT-AATCGTGAAATCACCAACAACGAATATATAAAGG 1986
Query 2166 TGATGCACGAGATCTGTGAAACCAACTCTTCAGGATGGGTTTTACAGAAAGCTCGATGAT 2225
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1987 TGATGCACGATCTCTGTGAAACCAACTCTTCAGGATGGGTTTTACAGAAAGCTCGATGAT 2046
Query 2226 GAGTT-T-AT---T-A-AA-TCATCATGACTAGATTTTAATGGTCTATAAATTTTGATAT 2277
||||| | || | | || |||||||||||||||||||||| |||||||||||||||||
Sbjct 2047 GAGTTATCATCACTCACAAATCATCATGACTAGATTTTAATGATCTATAAATTTTGATAT 2106
Query 2278 G----AGTAAACGGTTCAGTAGTTATGAGATATTCATAttttgtttttcctttttgaaat 2333
|||||||||||||||| || |||| ||| |||||| |||| ||||||||||||
Sbjct 2107 ATCCTAGTAAACGGTTCAGTAATTTTGAGGGATTTTTATTTTATTTTCCCTTTTTGAAAT 2166
Query 2334 caaacaaccttttttCTATTACTCAACTAGAGTTGGTAAGACAAGCCACACCAACACAGG 2393
|||||||||||||| ||| |||||||||||||||||| || | || | |||| ||
Sbjct 2167 CAAACAACCTTTTT-CTACTACTCAACTAGAGTTGGT----CA--C-AC-C-AACAGGGG 2216
Query 2394 AAAATAAACATAAGAAGCAACAAAAGAACTA 2424
||||||| |||||||| ||||||||||||||
Sbjct 2217 AAAATAA-CATAAGAAACAACAAAAGAACTA 2246
> Ahg951922 jgi|Araly1|951922|scaffold_25300001.1
Length=778
Score = 963 bits (521), Expect = 0.0
Identities = 705/786 (90%), Gaps = 44/786 (6%)
Strand=Plus/Plus
Query 141 CAGGAAGTAAAAATATGGACTTTGATGATGATGACAAACCAAAAGAGGTTACCAAAACCC 200
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 7 CAGGAAGTAAAAATATGGACTTTGATGATGAAGACAAACCAAAAGAGGTTGCCAAAACCC 66
Query 201 GTAGATTCGCTCCTGGCCGTGCCGGAAAGTCTAAACCCAAACCTAAACCGGAACCCACTG 260
||||||||||||||||||||||||||||| | ||||||| ||| ||
Sbjct 67 GTAGATTCGCTCCTGGCCGTGCCGGAAAG--T----------CTAAACC-GAA---AC-- 108
Query 261 CTGATAAACCGGTACAGCCGCCGCCGCAGTCACAAACTGAGTCCGTGAGCAAGACTGAGC 320
| |||||||| | | |||||||| |||||||||||||| |||||||||| |||||
Sbjct 109 C---TAAACCGG-A-A----CCGCCGCAATCACAAACTGAGTCTGTGAGCAAGAGTGAGC 159
Query 321 ATGACGTTGATGCTAAA-TTCGTTGG-CACTAAGGTTGAAACTGAGGTTTGTAATGGCTC 378
||||||||||||||||| | | ||| | ||||||||||||||||||||| |||||||||
Sbjct 160 ATGACGTTGATGCTAAAGGT-GCTGGTC-CTAAGGTTGAAACTGAGGTTTATAATGGCTC 217
Query 379 TGTGAAGATGGAGATCGATTCAAAAGTCGATAAAGAGCCTGAGATCATGGAAACTGAGTT 438
||| || |||||||| ||||||||||| ||||||||||| ||| ||||||| ||||||||
Sbjct 218 TGTTAAAATGGAGATTGATTCAAAAGTGGATAAAGAGCCAGAGTTCATGGATACTGAGTT 277
Query 439 GATGGAGGAAGATCAGCAGCTTCCATTGCaggaggagaaggaggaagaagaagaagaaga 498
||| ||||||||| ||||||||||||||||||| | | | | ||||||||||||| | |
Sbjct 278 GATTGAGGAAGATGAGCAGCTTCCATTGCAGGA-G-G-A--A-GAAGAAGAAGAAG-A-A 329
Query 499 CGACGTTGTTGTTCGTGAAATTGATGTTTTCTTTAAGCCGTC-TATTGATGCTAATACTC 557
|| ||||||||||||||||| |||||||||||||| ||||| | ||||||||||||||
Sbjct 330 -GATGTTGTTGTTCGTGAAATCGATGTTTTCTTTAATCCGTCGT-TTGATGCTAATACTA 387
Query 558 AGCTTTATGTTTTACAATATCCTCTAAGACCATCTTGGCGTCCATACGAAATGGATGAAC 617
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 388 AGCTTTATGTTCTACAATATCCTCTAAGACCGTCTTGGCGTCCATACGAAATGGATGAAC 447
Query 618 GTTGCGAAGAAGTTAGAGTGAATCCTTCTACATCGCAAGTGGAAATTGATTTGTCTATGG 677
| ||||||||||||||||||||| ||||||| || |||||||||||||| ||||||||||
Sbjct 448 GATGCGAAGAAGTTAGAGTGAATACTTCTACCTCCCAAGTGGAAATTGACTTGTCTATGG 507
Query 678 ATGTTCATTCGAAGAACTATGACTCCAATTTTGGACTAAATATGACTAAGCAGACCTTGA 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 ATGTTCATTCGAAGAACTATGACTCCAATTTTGGACTAAATATGACTAAGCAGACCTTGA 567
Query 738 AAACAACATGGAAGCAGCCTCCTACTTTGGATTATGCTGTTGGGGTTCTTTCAGGTGATA 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 AAACAACATGGAAGCAGCCTCCTACTTTGGATTATGCTGTTGGGGTTCTTTCAGGTGATA 627
Query 798 AGTTACACTTGAATCCTGTTCATGCTGTTGCCCAGCTCCGGCCGTCTATGCAGTCTCTTT 857
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 628 AGTTACACTTGAATCCTGTTCATGCTGTTGCTCAGCTCCGGCCGTCTATGCAGTATCTTT 687
Query 858 CATCCGACaa-aaaaaaGAAACAAGAAGAATCCACTGAAGAATCTGTGGGAACATCCAAA 916
||||| || |||||| |||||||||||||| |||||||||||||| || |||||||||
Sbjct 688 CATCCAACGGCAAAAAA-AAACAAGAAGAATCTACTGAAGAATCTGTCGGCACATCCAAA 746
Query 917 AAGCAG 922
|| |||
Sbjct 747 AAACAG 752
> Ahg897673 jgi|Araly1|897673|Al_scaffold_0005_1639
Length=1203
Score = 401 bits (217), Expect = 1e-110
Identities = 363/431 (84%), Gaps = 20/431 (5%)
Strand=Plus/Plus
Query 656 GTGGAAATTGATTTGTCTATGGATGTTCATTCGAAGAACTATGACTCCAATTTTGG-AC- 713
|||||| ||||||||||||| ||| | ||||| | ||||||||| ||| | ||||| ||
Sbjct 295 GTGGAAGTTGATTTGTCTATCGATATCCATTCCAGGAACTATGATTCCGAGTTTGGAACT 354
Query 714 ----TAAATATGACTAAGCAGA---CCTTGAAAACAACATGGAAGCAGCCTCCTACTTTG 766
|||||||||||||||||| |||||| ||| || ||||||||||||||||| |||
Sbjct 355 AAATTAAATATGACTAAGCAGACCTCCTTGACAACGACGTGGAAGCAGCCTCCTACGTTG 414
Query 767 GATTATGCTGTTGGGGTTCTTTCAGGTGATAAGTTACACTTGAATCCTGTTCATGCTGTT 826
| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GGTTATGCTATTGGTGTTCTTTCAGGTGATAAGTTACACTTGAATCCTGTTCATGCTGTT 474
Query 827 GCCCAGCTCCGGCCGTCTATGCAGTCTCTTTCATCCGACaaaaaaaaGAAACAAGAAGAA 886
|| |||||||| || ||| | |||| | |||| ||| | |||| ||| || || ||||
Sbjct 475 GCACAGCTCCGACCTTCTTTCCAGTGTTTTTCTTCC-A-AAAAGAAACAACCA-GAAGC- 530
Query 887 TCCACTGAAGAATCTGTGGGAACATCC-AAAAAGCAGAACAAGGGAGTGCAGCAGGCTTC 945
||| |||||||||||| |||| ||| ||||| | |||||| |||||||| | ||||
Sbjct 531 TCC--TGAAGAATCTGTCAGAACGTCCGAAAAA-CTGAACAAAGGAGTGCAT--G-CTTC 584
Query 946 GACGGATCAGAAACCAATTAATGAAGAAACTTGGGTTTCACTCAAGTATCATGGACTTCA 1005
||||||||||||||||||| |||| ||| ||||||| ||||||||||||||||||||||
Sbjct 585 GACGGATCAGAAACCAATTCCTGAACAAAATTGGGTTACACTCAAGTATCATGGACTTCA 644
Query 1006 ATCCGAATATTGCTCCAGATATCTTAACGGGATGATGGCGAATGGGAACTCTTCGATAGA 1065
|||||| | || ||| | ||||||||| || ||||||||||||||||||||||| |||||
Sbjct 645 ATCCGAGTTTTTCTCTAAATATCTTAATGGAATGATGGCGAATGGGAACTCTTCAATAGA 704
Query 1066 TTTCAACATGA 1076
||||||||||
Sbjct 705 CTTCAACATGA 715
Score = 366 bits (198), Expect = 4e-100
Identities = 355/427 (83%), Gaps = 25/427 (6%)
Strand=Plus/Plus
Query 1153 GGTCTTG-CTCTCCCTACC-ACTTAAAGAACGTGTGCAA-AAGTTGCTCTGCGAGGGATC 1209
||||||| | ||||||||| | || ||||||||||| || |||||||||||| ||||| |
Sbjct 720 GGTCTTGAC-CTCCCTACCGA-TTGAAGAACGTGTG-AAGAAGTTGCTCTGCCAGGGACC 776
Query 1210 TCCGTTGA-TTCGATACAGTGTTCTTAAACACTATGCTCCTGAGTTCTCAGACGAGGATT 1268
|| ||| | ||| ||||||||||||||| | ||||| || ||||| |||||||||||||
Sbjct 777 TCAGTT-ATTTCAATACAGTGTTCTTAAGTATTATGCCCCAGAGTTATCAGACGAGGATT 835
Query 1269 TCTTAGGGGCCCTCCAAGAATATGGCAGGTTAGTTCAAGGTTTATGGACTCCTAAAACTA 1328
||||| ||| | ||||| |||||| | ||||||||||||||||||||||||| ||| ||
Sbjct 836 TCTTAAGGGTCGTCCAACAATATGCCTGGTTAGTTCAAGGTTTATGGACTCCCAAATCT- 894
Query 1329 G-GCTACTAAAACTAGACGG-GCCTGTAGAAGCTGCCAGGGATTATGTCCTGTCT-CTGT 1385
| ||| ||||||||||| || | ||||||| | | ||||| ||||||||||| | ||||
Sbjct 895 GAGCTGCTAAAACTAGA-GGAGGCTGTAGAGGATTCCAGGAATTATGTCCTG-ATGCTGT 952
Query 1386 TCAGCCAGAATACAACTATAAA-GTACTCTGA-AGTTGAAGCAACGGGTGA-C-AAGATG 1441
||||| || | |||||||||| | ||||||| | |||||||||| ||| | | || |
Sbjct 953 TCAGCAAGGGTTCAACTATAAACG-ACTCTGACA-TTGAAGCAACTGGTCACCTTAG-GG 1009
Query 1442 AAACCTTTGATGGAAAGAATGTTGACTGAATTTGCCAAAGAAAGGCATGTGCTAAAAGAT 1501
||| ||||||| |||||||||| ||||||||||||||||| | ||||| |||
Sbjct 1010 AAA----AAATGGAAACTATGTTGACTGTATTTGCCAAAGAAAGGCCTCTGCTATGTGAT 1065
Query 1502 TGGAAGTTCAAAGAGCCCACTGATGTCTCATTCATAAAATCCTACCCGGAGATTGTTAAG 1561
|||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct 1066 TGGAAGTTCAAAGAGCCCACTGATGTTTCCTTCATAAAATCCTACCCGGAGATTGCTAAG 1125
Query 1562 GAGCAAG 1568
|||||||
Sbjct 1126 GAGCAAG 1132
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91530858735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5