BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49540.1
Length=822
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331361 jgi|Araly1|331361|fgenesh1_pm.C_scaffold_8000704 492 2e-138
> Ahg331361 jgi|Araly1|331361|fgenesh1_pm.C_scaffold_8000704
Length=477
Score = 492 bits (266), Expect = 2e-138
Identities = 287/297 (97%), Gaps = 2/297 (1%)
Strand=Plus/Plus
Query 155 ATGGGTTCATCTGAGAAGAGATCAAAGGATATCATGAGTGACATACCAACTTTCAGTGCA 214
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGGTTCATCTGAGAAGAGATCAAAGGATATCATGAGTGACATTCCAACTTTCAGTGCA 60
Query 215 GAGAATTTGCAGAACAATTTGAAAGTCATTCAAAACAGCCGGACGTTTCTGTCTATCATA 274
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 61 GAGAATTTGCAGAACAATTTGAAAGTTATTCAAAACAGCCGGACATTTCTGTCTATCATC 120
Query 275 GCTGGTG-TCTTAGCAGGAATAATTGGATTCAATGGCTTGATTGGTTTTGTATTTTACTT 333
||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 GCTGGTGTTCTT-GCAGGAATAATTGGATTCAATGGCTTGACTGGTTTTGTATTTTACTT 179
Query 334 TGTGGTGATGTTGATCACATCTGTTGGGCTCATGGCTAAGGCAGGATTCTCAGCTGACTT 393
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 180 TGTGGTGATGTTGATCACATCAGTTGGGCTCATGGCTAAGGCAGGATTCTCAGCTGACTT 239
Query 394 GTACTTTGATTCGTGGAATCGGGTTCTTTTTGACGGTTTTCTTGGTGGCCTTATGTC 450
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 240 GTACTTTGATTCGTGGAATCGGGTCCTTTTTGACGGCTTTCTTGGTGGCCTTATGTC 296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30383964849
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5