BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49550.1
Length=468
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495014 jgi|Araly1|495014|fgenesh2_kg.8__830__AT5G49550.1 695 0.0
Ahg497552 jgi|Araly1|497552|fgenesh2_kg.954__1__AT5G49550.1 691 0.0
> Ahg495014 jgi|Araly1|495014|fgenesh2_kg.8__830__AT5G49550.1
Length=441
Score = 695 bits (376), Expect = 0.0
Identities = 422/444 (95%), Gaps = 3/444 (1%)
Strand=Plus/Plus
Query 25 TATCCTCATCAATGGCGGATTCACGAGATGATCTAGCTGAATCGCTACAAAATCTATTCA 84
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 TATCCTCATCAATGGCGGAATCACGAGATGATCTAGCTGAATCGCTACAGAATCTATTCA 60
Query 85 CGAGTGTTTCATCTATGGTCAAATCCGAGCTCCAGGGAACGAACAACCATCTAGATCTAT 144
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 CGAGTGTTTCATCTATGGTCAAATCCGAGCTCCAGGGAACGAACAATCATCTAGATCTAT 120
Query 145 TGGAGAAGATGAACCTGAGAGTTGCGTCAGAGTACGATGATATGGGTGACGTGGCAGCTG 204
||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 TGGAGAAGATGAATCAGAGAGTTGCGTCGGAGTACGATGATATGGGTGACGTGGCAGCTG 180
Query 205 GGCTCAGAGTTTTCGCAGAACAGATGAAATCAAAAAGTGGTGGCTTGGATGAATTTGTAG 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 181 GGCTCAGAGTTTTCGCAGAACAGATGAAATCAAAAAGTGGTGGCTTGGATGAATTCGTCG 240
Query 265 GACAAATGGATGCTATCGAGAAACAAGTGTCGGAGTTTGAAGCTGTGATCTCTGTTCTAG 324
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 241 GACAAATGGATGCAATCGAGAAACAAGTGTCGGAATTTGAAGCTGTGATCTCTGTTCTAG 300
Query 325 ATCGATATGTCTCTGTCCTAGAATCTAAAATCCGAGCTGAGTATCGTCATCCTCATCATC 384
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 301 ATCGATATGTCTCTGTCCTAGAATCTAAAATCCGAGCTGAGTATCGTCTTCCTCATCATC 360
Query 385 AGCGTCGCTCTAATGATTCTGTTGTTACAGACTGATGCATTGTAGCAATAATTAATTTTT 444
| |||||||||||||| ||||||| |||||| ||| |||||||| ||||||||||||
Sbjct 361 ATCGTCGCTCTAATGACTCTGTTGGTACAGATTGAGGCATTGTAACAATAATTAATT--- 417
Query 445 ATCATTACTGAGATTGTTGGAATC 468
||| |||||||||||||||||||
Sbjct 418 ATCGCTACTGAGATTGTTGGAATC 441
> Ahg497552 jgi|Araly1|497552|fgenesh2_kg.954__1__AT5G49550.1
Length=443
Score = 691 bits (374), Expect = 0.0
Identities = 423/446 (95%), Gaps = 5/446 (1%)
Strand=Plus/Plus
Query 25 TATCCTCATCAATGGCGGATTCACGAGATGATCTAGCTGAATCGCTACAAAATCTATTCA 84
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 TATCCTCATCAATGGCGGATTCACGAGATGATCTAGCTGAATCGCTACAGAATCTATTCA 60
Query 85 CGAGTGTTTCATCTATGGTCAAATCCGAGCTCCAGGGAACGAACAACCATCTAGATCTAT 144
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 CGAGTGTTTCATCTATGGTCAAATCCGAGCTCCAGGGAACGAACAATCATCTAGATCTAT 120
Query 145 TGGAGAAGATGAACCTGAGAGTTGCGTCAGAGTACGATGATATGGGTGACGTGGCAGCTG 204
||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 TGGAGAAGATGAATCAGAGAGTTGCGTCGGAGTACGATGATATGGGTGACGTGGCAGCTG 180
Query 205 GGCTCAGAGTTTTCGCAGAACAGATGAAATCAAAAAGTGGTGGCTTGGATGAATTTGTAG 264
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 181 GGCTCAGAGTTTTCGCAGAGCAGATGAAATCAAAAAGTGGTGGCTTGGATGAATTTGTCG 240
Query 265 GACAAATGGATGCTATCGAGAAACAAGTGTCGGAGTTTGAAGCTGTGATCTCTGTTCTAG 324
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 241 GACAAATGGATGCAATCGAGAAACAAGTGTCGGAATTTGAAGCTGTGATCTCTGTTCTAG 300
Query 325 ATCGATATGTCTCTGTCCTAGAATCTAAAATCCGAGCTGAGTATCGTCATCCTCATCATC 384
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 301 ATCGATATGTCTCTGTCCTAGAATCTAAAATCCGAGCTGAGTATCGTCATCATCATCATC 360
Query 385 AGCGTCGCTCTAATGATTCTGTTGTTACAGACTGATGCA-TT-GTAGCAATAATTAATTT 442
| |||||||||||||| ||||||| |||||| ||| ||| || ||| ||||||||||||
Sbjct 361 ATCGTCGCTCTAATGACTCTGTTGGTACAGATTGAGGCAATTTGTAACAATAATTAATT- 419
Query 443 TTATCATTACTGAGATTGTTGGAATC 468
||| |||||||||||||||||||
Sbjct 420 --ATCGCTACTGAGATTGTTGGAATC 443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16941081516
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5