BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49555.1
Length=1887
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495015 jgi|Araly1|495015|fgenesh2_kg.8__831__AT5G49555.1 2955 0.0
Ahg952612 jgi|Araly1|952612|scaffold_95400002.1 451 7e-126
> Ahg495015 jgi|Araly1|495015|fgenesh2_kg.8__831__AT5G49555.1
Length=1853
Score = 2955 bits (1600), Expect = 0.0
Identities = 1786/1872 (95%), Gaps = 28/1872 (1%)
Strand=Plus/Plus
Query 25 GAAGACTACAATGTGGCGCCGGAGCTTCAGTACATTACCGAAGAAGAAATGGGACGCGGT 84
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAGACTACAATGTGGTGCCGGAGCTTCAGTACATTACCGAAGAAGAAATGGGACGCGGT 60
Query 85 GGTGATCGGAGGTGGCCACAACGGATTAACAGCCGCAGCTTACCTAGCACGCGGAGGTCT 144
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 61 GGTGATCGGAGGTGGCCACAACGGATTAACAGCCGCGGCTTACCTGGCACGCGGAGGTCT 120
Query 145 CTCCGTCGCTGTTCTCGAGCGCCGTCATGTCATCGGTGGCGCGGCAGTGACGGAGGAGAT 204
|||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 121 CTCCGTGGCTGTTCTCGAGCGCCGTCATGTCATCGGTGGTGCGGCAGTAACGGAGGAGAT 180
Query 205 CGTTCCTGGATTCAAATTCTCACGCTGCAGTTACCTTCAGGGCTTACTTCGTCCTTGTAT 264
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 181 CGTTCCTGGATTCAAATTCTCACGCTGCAGTTACCTTCAGAGCTTACTTCGTCCTTGTAT 240
Query 265 CATTAGAGAATTGGAGTTAGGTAGACATGGACTTAAGCTTTTGAAGAGAAGTCCTTCATC 324
|||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 241 CATTAGAGAATTAGAGTTAGGCAGACATGGACTTAAGCTTCTGAAGAGAAGTCCTTCATC 300
Query 325 GTTTACACCTTGTTTAGATGGACGTTATCTTCTGCTTGGACCTGATCAAGATCTTAATCA 384
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 301 GTTTACACCTTGTTCGGATGGACGTTATCTTCTTCTTGGACCTGATCAAGATCTTAATCA 360
Query 385 TTCTGAGATTTCAAAGTTCTCTAAACATGATGCTGATGCTTACCCAAGATACGAGAAGCA 444
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 361 TTCTGAGATTTCAAAGTTCTCCAAACATGATGCTCATGCTTACCCAAGATACGAGAAGCA 420
Query 445 GCTAGAGAGGTTTTGTGGATTCATGGATCCTCTTTTGGATTCAACTCCACCTGAATCTCT 504
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 421 GCTAGAGAGGTTTTGTGGATTCATGGATCCTCTTTTGGATGCAACTCCACCTGAATCTCT 480
Query 505 GCAAAGTGCCTCTTCTTTTAATGATAAGTTGAGCAACAAAATGTACAAATCTGCTTTCTG 564
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 481 GCAAGGTGTTTCTTCTTTTAATGATAAGTTGAGCAACAAAATGTACAAATCTGCTTTTTG 540
Query 565 GGCTCGTTGTCTCCGGCAAGCAGTTTCTTTGGGGCATAAAGATATGGTG---GCTTTTAT 621
|||||||||||| ||||| || |||||| |||||||||||||||||||| | ||||||
Sbjct 541 GGCTCGTTGTCTGCGGCAGGCGGTTTCTCTGGGGCATAAAGATATGGTGTATGATTTTAT 600
Query 622 GGATCTTTTATTGGCACCAGCTTCAAAAGTTTTGAACAACTGGTTTGAGTCTGATGTCCT 681
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGATCTTTTATTGGCCCCAGCTTCAAAAGTTTTGAACAACTGGTTTGAGTCTGATGTCCT 660
Query 682 GAAGGCGAGTCTTGCAACAGATGCTGTGATTGGATCTACGGCCAGTGTCCATACTCCGGG 741
|||||||| |||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 661 GAAGGCGACTCTTGCCACAGATGCCGTGATTGGATCTACGGCTAGTGTCCATACTCCGGG 720
Query 742 AAGTGGATATGTTCTCCTACATCATGTGATGGGAGAAACAGATGGAGAGAAAGGCATTTG 801
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AAGTGGATATGTCCTCCTACATCATGTGATGGGAGAAACAGATGGAGAGAAAGGCATTTG 780
Query 802 GTCTTACGTTGAAGGTGGGATGGGCTCTGTCTCCATGGCTATAGCCAATGCTGCAAAGGA 861
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GTCTTATGTTGAAGGTGGGATGGGCTCTGTCTCCATGGCTATAGCCAATGCTGCAAAGGA 840
Query 862 AGCTGGTGCTGAGATTTTCACAAACGCAGAGGTTTCTGAAATACTAACTGAAGACTCTAG 921
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 841 AGCTGGTGCTGAGATTTTCACAAACGCAGAGGTTTCTGAAATACTAACTGAGGACTCTAG 900
Query 922 CATCGTGAAAGGGGTTTTGCTTGCTGATGGTACACGGGTGGAGTCATCGGCTATATTGTC 981
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 901 CATCGTGAAAGGGGTTTTGCTAGCTGATGGTACACGGGTGGAGTCATCGGCTATATTGTC 960
Query 982 CAATGCGACCCCTTACAGAACTTATGTGGAGTTGGTTCCGACCAATGTTCTTCCTGAAAA 1041
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CAATGCTACCCCTTACAAAACTTATGTGGAGTTGGTTCCGACCAATGTTCTTCCTGAAAA 1020
Query 1042 TTTCGTCAGTGCTATTAAGAACTCAGATTACAGCTCTGCAACTACCAAAATAAACTTGGC 1101
|||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1021 TTTCATCGGTGCTATTAAGAACTCAGATTACAGCTCTGCAACTACCAAGATAAACTTGGC 1080
Query 1102 TGTTGACAAGTTACCACAGTTCCAGTGCTGCAACACAAATCATTCAGGTCCAGGTCCAGA 1161
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1081 TGTTGACAAATTACCACAGTTCCAGTGCTGCAACACAAATCATTCAAGTCCAGGTCCAGA 1140
Query 1162 GCATTTTGGCACTATACACATTGGTGCAGAGAGCATGGACGAGGTTCACTCAGCATGTCA 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GCATTTTGGCACTATACACATTGGTGCAGAGAGCATGGACGAGGTTCACTCAGCATGTCA 1200
Query 1222 TGATTCTGAAAATGGCTTACCATCGAGAAGACCAGTGATCGAAATGACTATTCCATCCAC 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 TGATTCTGAAAATGGCTTACCATCGAGAAGACCAGTGATCGAAATGACTATTCCATCCAC 1260
Query 1282 ACTAGACAACACCATTTCTCCCCCAGGGAAGCATGTAATCAACTTGTTCATCCAGTACAC 1341
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1261 ACTAGACAACACCATTTCTCCCCCAGGGAAGCATGTAATCAACTTGTTCATCCAATACAC 1320
Query 1342 TCCTTACAAGCCCTCAGATGGAAGCTGGGAAGATCCTACTTACCGAGAAGCCTTTGCACA 1401
|||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1321 TCCTTACAAGCCATCAGATGGAAACTGGGAAGATCCTACTTACCGAGAAGCATTTGCACA 1380
Query 1402 AAGGTGTTTCAAACTGATTGATGAATATGCACCCGGGTTTAGCTCATCCATCATTAGCTA 1461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 AAGGTGTTTCAAACTGATTGATGAATATGCACCCGGGTTTAGCTCATCCATCATTAGCTA 1440
Query 1462 CGACATGTTGACTCCTCCGGACCTGGAACGGGAAATTGGTCTAACAGGCGGAAACATCTT 1521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 CGACATGTTGACTCCTCCGGACCTGGAACGGGAAATTGGTCTAACAGGCGGAAACATCTT 1500
Query 1522 TCACGGTGCCATGGGATTAGACTCTCTCTTCCTGATGCGCCCTGTGAAAGGATGGTCAAA 1581
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1501 TCACGGTGCCATGGGATTAGACTCTCTCTTCTTGATGCGCCCTGTGAAAGGATGGTCAAA 1560
Query 1582 TTACAGAAGCCCTTTGAAAGGTCTCTACTTGTGTGGCAGCGGAGCTCATCCTGGAGGCGG 1641
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1561 TTACAGAAGCCCTTTGAAAGGTCTCTACTTGTGCGGCAGCGGAGCTCATCCTGGAGGCGG 1620
Query 1642 AGTTATGGGTGCACCTGGAAGAAACGCTGCACATGTTGTTCTTCAAGACTTGAAAAGAAT 1701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 AGTTATGGGTGCACCTGGAAGAAACGCTGCACATGTTGTTCTTCAAGACTTGAAAAGAAT 1680
Query 1702 CTAGCGAG-TATAATCTC--AGACTGTGCAATGTTAACTCTCATGTGTAAGTTGTTTGTT 1758
|||||||| | ||||||| ||||||||||||| |||||||||||||||||||||||| |
Sbjct 1681 CTAGCGAGGT-TAATCTCTCAGACTGTGCAATGATAACTCTCATGTGTAAGTTGTTTGCT 1739
Query 1759 ACTGCTCTGAAAACCTCTGTCGTAGGGAGAGGCTTACAGA--CATGGACAATAGTTGATA 1816
| |||| |||||| | ||| |||||||| |||||||| ||||| ||
Sbjct 1740 ATTGCTTTGAAAA-----G----AGG------CTTACAGAAGCATGGACAC-AGTTGTTA 1783
Query 1817 TCAACGAATAATAAGCC-TCCACGTGTAGCTTAACCTAAATATCACTAATTCAACAAATA 1875
||||||||||||||||| |||||||||||||||| | || | |||||||||||||||
Sbjct 1784 TCAACGAATAATAAGCCCTCCACGTGTAGCTTAAG-TGCTTAAC-CTAATTCAACAAATA 1841
Query 1876 TGGAAAGTGCCC 1887
||||||||||||
Sbjct 1842 TGGAAAGTGCCC 1853
> Ahg952612 jgi|Araly1|952612|scaffold_95400002.1
Length=435
Score = 451 bits (244), Expect = 7e-126
Identities = 258/265 (97%), Gaps = 0/265 (0%)
Strand=Plus/Plus
Query 26 AAGACTACAATGTGGCGCCGGAGCTTCAGTACATTACCGAAGAAGAAATGGGACGCGGTG 85
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 171 AAGACTACAATGTGGCGCCGGAGCTTCAGTACATTACCGAAGAAGAAATGGGACGCTGTG 230
Query 86 GTGATCGGAGGTGGCCACAACGGATTAACAGCCGCAGCTTACCTAGCACGCGGAGGTCTC 145
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 231 GTGATCGGAGGTGGCCACAACGGATTAACAGCCGCGGCTTACCTGGCACGCGGAGGTCTC 290
Query 146 TCCGTCGCTGTTCTCGAGCGCCGTCATGTCATCGGTGGCGCGGCAGTGACGGAGGAGATC 205
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 TCCGTGGCTGTTCTCGAGCGCCGTCATGTCATCGGTGGCGCGGCAGTGACGGAGGAGATC 350
Query 206 GTTCCTGGATTCAAATTCTCACGCTGCAGTTACCTTCAGGGCTTACTTCGTCCTTGTATC 265
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 351 GTTCCTGGATTCAAATTCTCACGCTGCAGTTACCTTCAGAGCTTACTTCGTCCTTGTATC 410
Query 266 ATTAGAGAATTGGAGTTAGGTAGAC 290
||||||||||| |||||||| ||||
Sbjct 411 ATTAGAGAATTAGAGTTAGGCAGAC 435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70885945945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5