BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49560.1
Length=825
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495016 jgi|Araly1|495016|fgenesh2_kg.8__832__AT5G49560.1 1269 0.0
> Ahg495016 jgi|Araly1|495016|fgenesh2_kg.8__832__AT5G49560.1
Length=813
Score = 1269 bits (687), Expect = 0.0
Identities = 786/830 (95%), Gaps = 22/830 (3%)
Strand=Plus/Plus
Query 1 ATGATTACTCTT-CCTCTGCGAGACGACGATGAGGAAAACGACACATACGAAGCTAAAAT 59
|||||| || || ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGATTTCT-TTCCCTCTGCGAGACGACGATGAGGAAAACGACAGATACGAAGCTAAAAT 59
Query 60 GCTCCTCATAGGCGAGAATGGTCTCGACGGTGAGAGTTTACCTCCTACTCCTCTGCGTGA 119
||||||||| | || ||||||||||||||||||||||| ||||||||||||
Sbjct 60 GCTCCTCAT--------A-GG---CGACGGTGAGAGTTTACCTCCTATTCCTCTGCGTGA 107
Query 120 CGGTGCACTGGAGCTCCAGAAGTATAACATCAGCTCCATCGAGTCAACAGTCGTGATTCG 179
|||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 108 CGGTGCACCGGAGCTCCAGAAGTACAACATCCGCTCCATCGAGTCAACAGTCGTGATTCG 167
Query 180 TGAGCTGACGTCACAAGGTCTCTCCTTTCAGCTCTGGCCAGCGGCTTCTACTTTCGTCAC 239
|||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 168 TGAGCTGACGTCACAAGGTCTCTCCTTTCAGCTCTGGCCAGCCGCTTCTACATTGGTCAC 227
Query 240 GTTGCTTGATAACTACCGACGTGACCCTAGCAAGAGTCCACTCACCGCCACACTCTTGTC 299
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 228 GTTGCTTGATAACTACCGACGTGACCCTAGCAACAGTCCACTCACCGCCACACTCTCGTC 287
Query 300 GCTGAAAAAACCATCGCCGTTGAACATACTCGAGCTCGGATCTGGAACCGGCCTCGTCGG 359
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 288 GCTG---AAACCATCGCCGTTGAACATACTCGAGCTCGGATCTGGAACCGGCGTCGTCGG 344
Query 360 GATCGCTGCGGCAATCACTCTCTCTGCTAACGTCACGGTGACGGATCTCCCACACGTCTT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 GATCGCTGCGGCAATCACTCTCTCTGCTAACGTCACGGTGACGGATCTCCCACACGTCTT 404
Query 420 AGATAATCTCAACTTCAACGCCGAAGCAAACGCTGAAATTGTTGAGAGATTCGGCGGGAA 479
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 405 AGACAATCTCAACTTCAACGCCGAAGCAAACGCTGAAACTGTTGAGAGATTCGGCGGGAA 464
Query 480 AGTCAACGTGGCACCACTACGATGGGGAGAAGCTGATGACGT---GGAGGTTCTAGGTCA 536
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 465 AGTCAACGTGGCACCACTCCGATGGGGAGAAGCTGATGACGTGGAGGAGGTTCTAGGTCG 524
Query 537 GAACGTTGACTTGATTCTGGCTTCGGACGTGGTGTATCATGACCATCTCTACGAGCCTCT 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 GAACGTTGACTTGATTCTGGCTTCGGACGTGGTGTATCATGACCATCTCTACGAGCCTCT 584
Query 597 CCTCAAAACGCTGCGTTTGATGCAGCTAGAGGGGAAGAGGTTAATTTTCCTGATGGCGCA 656
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||
Sbjct 585 CCTCAAAACGCTGCGTTTGATGCAGCTAGAGGGGAAGAGGTTAGTTTTCCTTATGGCTCA 644
Query 657 TCTAAGGAGATGGAAGAAAGAATCTGTCTTCTTCAAAAAAGCTCGAAAGCTCTTCGATGT 716
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 645 TCTAAGGAGATGGAAGAAAGAATCTGTCTTCTTCAAGAAAGCTCGAAAGCTCTTCGATGT 704
Query 717 TGACGTTATCCACTCTGATGTTCCTCAAGAAAG-TTCTAGAATCGGTGTTGTGGTTTACC 775
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 705 TGACGTTATCCACTCTGATGTTCCTCAA-AAAGGTTCTAGAATCGGTGTTGTGGTTTACC 763
Query 776 GTTTCACCACGAAACAGCCAAATCAGAATGGTCGGATTGTTTCGTGTTAG 825
|||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 GTTTTACTACGAAACAGCCAAATCAGAATGGTCGGATTGTTTCGTGTTAG 813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30498333600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5