BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G49570.1 Length=2438 Score E Sequences producing significant alignments: (Bits) Value Ahg495017 jgi|Araly1|495017|fgenesh2_kg.8__833__AT5G49570.1 3620 0.0 Ahg952219 jgi|Araly1|952219|scaffold_46800001.1 167 4e-40 Ahg495015 jgi|Araly1|495015|fgenesh2_kg.8__831__AT5G49555.1 93.5 7e-18 > Ahg495017 jgi|Araly1|495017|fgenesh2_kg.8__833__AT5G49570.1 Length=2328 Score = 3620 bits (1960), Expect = 0.0 Identities = 2215/2339 (95%), Gaps = 14/2339 (1%) Strand=Plus/Plus Query 11 GGATCAAACAAACTTGAGAGATCATTTTGGAATTTCAATAATCTGAGAAAATGGTTGCTC 70 ||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 1 GGATCAATCAAACTTGAGAGATCGTTTAGGAATTTCAATAATCTGAGAAAATGGTTGCTC 60 Query 71 GGAAATTTGTCGTCCGCCATGAAGATTCGAGCTTCGATGTCGACTACAACACTGAAGATG 130 | ||||| ||||||| |||||||||||| ||||||||||| |||||| |||||||||||| Sbjct 61 GCAAATTCGTCGTCCACCATGAAGATTCAAGCTTCGATGTAGACTACGACACTGAAGATG 120 Query 131 GTCTTGAGGTTTTACGATTTCTAATCTTCTCCCTCACTTTAGTTCCTCCTGAAGAACAAA 190 | ||||||||||||||||||| |||||||||||||||||| || |||||||||||||||| Sbjct 121 GCCTTGAGGTTTTACGATTTCAAATCTTCTCCCTCACTTTGGTACCTCCTGAAGAACAAA 180 Query 191 AGATCGTTGCGGAAGATGATAATCGATTGGTGTCTGATGAGTCTGATCTCGCTTCTTTAT 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 181 AGATCGTTGCGGAAGATGATAATCGATTGGTGTCTGATGAGTCTGATCTCGCTTCTATAT 240 Query 251 CTGAGAGACTTCGATTAGTTTCAGTTGGAGAAGATTCTGTAGAGAACTCAGATGCGGAAA 310 | |||||||||||||| |||||| |||||| ||||||||||||||| ||||||||||||| Sbjct 241 CCGAGAGACTTCGATTGGTTTCAATTGGAGGAGATTCTGTAGAGAATTCAGATGCGGAAA 300 Query 311 TGTTGAAATCAGATGAAGAATTGGCTCGAATGTTGCAGGCAGAAGAAGATGCTATTATGT 370 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 301 TGTTGAAATCAGATGAAGAATTGGCTCGAATGTTGCAGGCAGAAGAAGATGCGATGATGT 360 Query 371 TTCAACAGTTTGTCGCTGCACGAGATAACGGCGAATTCGAAGG-GAGAATTAGGCCTTAT 429 ||||||||||||| ||||||||||||| ||| | ||||| ||| |||||| ||||||||| Sbjct 361 TTCAACAGTTTGTTGCTGCACGAGATAGCGGTGGATTCG-AGGAGAGAATCAGGCCTTAT 419 Query 430 GTTAGTCAAGTTCTCATGTATGAAGATCCAGTCCGCCAAGATGCTGCTCGAAAGACTGTT 489 || || ||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| Sbjct 420 GTCAGCCAAGTTCTCATGTATGAAGATCCAGTCCGTCAAGAAGCTGCTCGAAAGACCGTT 479 Query 490 CCTAAAGACGAGCTTGAGGAGAAAGCATTGGTTTCTCTGGCCAAGGAAGGGAATTTTGAG 549 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 480 CCTAAAGACGAGCTTGAGGAGAAAGCATTGGTTTCTCTGGCCAAGGAGGGGAATTTCGAG 539 Query 550 CCATCGAAAGAGGAAAGAGACTACGCTTTCCTGCTTCAGCTTCTTTTCTGGTTCAAAAAA 609 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 540 CCATCGAAAAAGGAAAGAGACTACGCTTTCCTGCTTCAGCTTCTTTTCTGGTTCAAAAGA 599 Query 610 TCCTTCAGATGGGTCAATGAACCTCCTTGTGACTTTTGTGGTAACAAAACCATAGGCCAG 669 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 600 TCCTTCAGATGGGTCAATGAACCTCCATGTGACTTTTGTGGTAACAAAACCATAGGCCAG 659 Query 670 GGGATGGGAAACCCACTTACCTCGGAGCTTGCTTATGGAGCAAATCGAGTTGAAATATAT 729 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 GGGATGGCAAACCCACTTACCTCGGAGCTTGCTTATGGAGCAAATCGAGTTGAAATATAT 719 Query 730 CGCTGTACCATGTGTCCAACAACTACTCGATTCCCTCGGTACAACGATCCGCTAAAGCTC 789 |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 720 CGCTGTACCATGTGTCCAACAATTACTCGATTCCCTCGGTACAACGATCCACTAAAGCTC 779 Query 790 GTAGAAACAAAGAAAGGTCGTTGCGGAGAGTGGGCGAACTGCTTTACGCTATACTGCCGC 849 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 GTAGAAACAAAGAAAGGTCGTTGCGGAGAGTGGGCGAACTGCTTTACGCTATACTGCCGC 839 Query 850 ACGTTTGGCTATGATTCTCGTTTGATAATGGACTTCACAGATCACGTGTGGACAGAATGC 909 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 840 TCGTTTGGCTATGATTCTCGTTTGATAATGGACTTCACAGATCACGTCTGGACAGAATGC 899 Query 910 TACTCTCACTCGTTAAAGAGGTGGATCCATCTTGACCCTTGTGAAGGAGTGTATGATAAA 969 |||||||| || |||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 900 TACTCTCATTCTTTAAAGAGATGGATCCATCTTGACCCTTGTGAAGGAGTGTATGACAAA 959 Query 970 CCCATGTTATATGAGAAAGGATGGAATAAAAAATTGAATTATGTCATTGCGATTTCTAAG 1029 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 960 CCCATGTTATATGAGAAAGGATGGAACAAAAAATTGAATTATGTCATTGCGATTTCCAAG 1019 Query 1030 GACGGGGTTTGTGATGTTACCAAGCGATATACAAAGAAATGGCATGAGGTTTTATCTAGA 1089 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 GACGGGGTTTGTGATGTTACCAAGCGATATACAAAGAAATGGCATGAGGTTTTATCTAGA 1079 Query 1090 AGAACTCTCACAACTGAATCATCTTTGCAAGATGGTCTTCGAACCCTGACAAGGGAACGA 1149 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 AGAACTCTCACAACTGAATCATCTTTGCAAGATGGTCTTCGAACCCTGACAAGGGAACGG 1139 Query 1150 CGACGTAGCTTAATGTTTGAATCTCTATCTAAGCTTGAATTACGAGACAGAAATGAGCAG 1209 ||| ||||||||||| |||||| || || |||||||||| ||||||||||| |||||| Sbjct 1140 CGAAGTAGCTTAATGGACGAATCTTTACCTGAGCTTGAATTCCGAGACAGAAAAGAGCAG 1199 Query 1210 GAAGAACTAGAGAGAAATCTGCATTCCGCAGATAATGCCTCAGTTTCTTTACCCGGAAGG 1269 |||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 1200 GAAGAACTCGAGAGAAATCTGCATTCCCCAGATGATGCCTCAGTTTCTTTACCCGGAAGG 1259 Query 1270 CAAAGTGGGGACAGGGAATGGCGTATTATGAGATCAGAATTTGGTTCAGACGAAAACTCA 1329 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1260 CAAAGTGGGGACAGGGAATGGCGCATTATGAGATCAGAATTTGGTTCAGACGAAAACTCC 1319 Query 1330 TCTGTCAGCTCTTCCTCTTGCCCAGTTCGCAAATGCGTTGATGACCATGTGACCAACATT 1389 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1320 TCTGTCAGCTCTTCCTCTTGCCCAGTTCGCAAATGCGTTGATGACCATGTGACCAACATT 1379 Query 1390 TATGACTCGTTTCTACCTATCCTTACTCAGTTCGTTGAGGACGGCTTACCTGTAGCAAGA 1449 |||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 1380 TATGACTCGTTTCTGCCTATCCTGACTCAGTTCGTTGAGGACGGCTTACCCGTAGCAAGA 1439 Query 1450 ACAAATGAGGTACTTAAGATGATCAAGCAAGTCCTAGTGGATCTGAAGAATGCGCCTTAC 1509 ||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||| Sbjct 1440 GCAATTGAGGTACTTAAGATGATCAAGCAAGTCCTAGTGGATCTAAAGAATACGCCTTAC 1499 Query 1510 AAAACAAGGAAGGCTCGATTGACTTTAGATTCAGATAACTCAAGTTCATTCCCGGAGCAG 1569 ||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| |||||| Sbjct 1500 AAAACGAGGAAGGCTCGCTTGACTTTAGATTCAGATAGCTCAAGTTCATTCCCAGAGCAG 1559 Query 1570 TTTCTTCCCGCACTAGGCGATTTGCTTCTCGCTCTTTCTTTAAAGAGCGAGAGAGACACA 1629 ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct 1560 TTTCTGCCCGCACTAGGTGATTTGCTTCTCGCTCTTTCTTTAAAGAGCGAGCGAGACACA 1619 Query 1630 AACGGTAAAAGTGTCACAATATCCGTAGACGGGAAA-CTCACTAAAACTGCTATAGCATT 1688 |||| ||||||||| ||| ||| | | ||||||||| || || ||||||||||||||||| Sbjct 1620 AACGATAAAAGTGTTACACTATGCTTGGACGGGAAACCT-ACAAAAACTGCTATAGCATT 1678 Query 1689 GCCAGTTGCATTGGACGCGTTAAGGGAACTTGTTGCTGACCTCAGCAAATACCAAAACTT 1748 |||||||||||||||||| || |||||||| || |||||||||||||||| ||||||||| Sbjct 1679 GCCAGTTGCATTGGACGCTTTGAGGGAACTGGTCGCTGACCTCAGCAAATGCCAAAACTT 1738 Query 1749 AAACAAAGATTCACTGTCTTTTCCACTTGTTAAACAGAACAGGGTATGCTCTGGTTCTGT 1808 |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct 1739 AAACAAAGATTCACTGTCTTTTCCACTTCTTAAACAGAACAGGGTATACTCTGGTTCTGT 1798 Query 1809 CCTCGCAAGTGGTGAAGAGCTTCCTTCTGGCATTGCAACCGCAGCTTTTGATGGAATCCA 1868 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1799 CCTCGCAAGTGGTGAAGAGCTTCCTTCTGGCATTGCAACCGCAGCTTTTGATGGAATCCA 1858 Query 1869 AGAGTCCAAATGGGAAGAACCAAATGGTGCAAAAGGCTGTTGGATCGTGTACAAAACACT 1928 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1859 AGAATCCAAATGGGAAGAACCAAATGGTGCAAAAGGCTGTTGGATCGTGTACAAAACACT 1918 Query 1929 CTACAACCAGATGCACCAACTCATAGCATACGA-ACTCATGTCTGCTAATGATGCCCCAG 1987 ||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||| Sbjct 1919 CTACAACCAGATGCACCAACTCATAGCATACGAGA-TCATGTCTGCAAATGATGCCCCAG 1977 Query 1988 AGAGAGACCCCAAAGATTGGATTCTTGAAGGAAGTAACGATGGTGGTTCGACATGGTGTG 2047 |||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||| Sbjct 1978 AGAGAGACCCCAAAGATTGGGTTCTTGAAGGGAGTAACGATGGTGGATCGACATGGTGTG 2037 Query 2048 TCCTAGACAAGCAAACTAGTCAGGTATTCGAGGAACGGTTCCAACGCAAATCCTACAAAA 2107 | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 2038 TTCTAGACAAGCAAACTAGTCAGGTATTCGAGGAGCGGTTCCAACGCAAATCCTACAAAA 2097 Query 2108 TAACTACACCTGGATTCCAAGCAAATCTTTTCAGGTTCCGGTTTTTAAGTGTACGAGACG 2167 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2098 TAACAACACCTGGATTCCAAGCAAATCTTTTCAGGTTCCGGTTTTTAAGTGTACGAGACG 2157 Query 2168 TGAATTCGACCTCGAGACTACAACTAGGGAGCATCGATCTGTACAGAAGTCACCAGTGAT 2227 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | || Sbjct 2158 TGAATTCGACCTCGAGACTACAACTAGGGAGCATCGATCTGTACAGAAGCCACCAATAAT 2217 Query 2228 TTAATGATGCATTCATGCACATCAAATGTATAAATATTCCAAAAACATCAATTTGTTTTG 2287 | || | | || ||||||||||||||||| | |||||||||||||||||||||||| Sbjct 2218 TCAA-G-T--AT----GCACATCAAATGTATAACTGTTCCAAAAACATCAATTTGTTTTG 2269 Query 2288 TCTTCACTTTCTGCACATTGATGTATTCCGTATTCGTGAGGGAATTGGCCTTTGCTATT 2346 |||||||||| |||| ||||||||||||| | | |||||||||||||||||||| |||| Sbjct 2270 TCTTCACTTTGTGCAGATTGATGTATTCCTTGTACGTGAGGGAATTGGCCTTTGTTATT 2328 > Ahg952219 jgi|Araly1|952219|scaffold_46800001.1 Length=266 Score = 167 bits (90), Expect = 4e-40 Identities = 102/108 (94%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 35 TTTTGGAATTTCAATAATCTGAGAAAATGGTTGCTCGGAAATTTGTCGTCCGCCATGAAG 94 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 1 TTTTGGAATTTCAATAATCTGAGAAAATGGTTGCTCGCAAATTCGTCGTCCGCCATGAAG 60 Query 95 ATTCGAGCTTCGATGTCGACTACAACACTGAAGATGGTCTTGAGGTTT 142 |||| |||||||||||||||||| ||||||||||||| ||| |||||| Sbjct 61 ATTCAAGCTTCGATGTCGACTACGACACTGAAGATGGCCTTCAGGTTT 108 > Ahg495015 jgi|Araly1|495015|fgenesh2_kg.8__831__AT5G49555.1 Length=1853 Score = 93.5 bits (50), Expect = 7e-18 Identities = 61/66 (92%), Gaps = 1/66 (2%) Strand=Plus/Plus Query 2372 AGAGGCTTACAGACTCATGGTCACAGTTGTTATCAACGAATAATAAGCC-TCCACGTGTA 2430 ||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||| Sbjct 1752 AGAGGCTTACAGAAGCATGGACACAGTTGTTATCAACGAATAATAAGCCCTCCACGTGTA 1811 Query 2431 ACTTAA 2436 ||||| Sbjct 1812 GCTTAA 1817 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 91873670940 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5