BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49570.1
Length=2438
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495017 jgi|Araly1|495017|fgenesh2_kg.8__833__AT5G49570.1 3620 0.0
Ahg952219 jgi|Araly1|952219|scaffold_46800001.1 167 4e-40
Ahg495015 jgi|Araly1|495015|fgenesh2_kg.8__831__AT5G49555.1 93.5 7e-18
> Ahg495017 jgi|Araly1|495017|fgenesh2_kg.8__833__AT5G49570.1
Length=2328
Score = 3620 bits (1960), Expect = 0.0
Identities = 2215/2339 (95%), Gaps = 14/2339 (1%)
Strand=Plus/Plus
Query 11 GGATCAAACAAACTTGAGAGATCATTTTGGAATTTCAATAATCTGAGAAAATGGTTGCTC 70
||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1 GGATCAATCAAACTTGAGAGATCGTTTAGGAATTTCAATAATCTGAGAAAATGGTTGCTC 60
Query 71 GGAAATTTGTCGTCCGCCATGAAGATTCGAGCTTCGATGTCGACTACAACACTGAAGATG 130
| ||||| ||||||| |||||||||||| ||||||||||| |||||| ||||||||||||
Sbjct 61 GCAAATTCGTCGTCCACCATGAAGATTCAAGCTTCGATGTAGACTACGACACTGAAGATG 120
Query 131 GTCTTGAGGTTTTACGATTTCTAATCTTCTCCCTCACTTTAGTTCCTCCTGAAGAACAAA 190
| ||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||
Sbjct 121 GCCTTGAGGTTTTACGATTTCAAATCTTCTCCCTCACTTTGGTACCTCCTGAAGAACAAA 180
Query 191 AGATCGTTGCGGAAGATGATAATCGATTGGTGTCTGATGAGTCTGATCTCGCTTCTTTAT 250
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 AGATCGTTGCGGAAGATGATAATCGATTGGTGTCTGATGAGTCTGATCTCGCTTCTATAT 240
Query 251 CTGAGAGACTTCGATTAGTTTCAGTTGGAGAAGATTCTGTAGAGAACTCAGATGCGGAAA 310
| |||||||||||||| |||||| |||||| ||||||||||||||| |||||||||||||
Sbjct 241 CCGAGAGACTTCGATTGGTTTCAATTGGAGGAGATTCTGTAGAGAATTCAGATGCGGAAA 300
Query 311 TGTTGAAATCAGATGAAGAATTGGCTCGAATGTTGCAGGCAGAAGAAGATGCTATTATGT 370
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 301 TGTTGAAATCAGATGAAGAATTGGCTCGAATGTTGCAGGCAGAAGAAGATGCGATGATGT 360
Query 371 TTCAACAGTTTGTCGCTGCACGAGATAACGGCGAATTCGAAGG-GAGAATTAGGCCTTAT 429
||||||||||||| ||||||||||||| ||| | ||||| ||| |||||| |||||||||
Sbjct 361 TTCAACAGTTTGTTGCTGCACGAGATAGCGGTGGATTCG-AGGAGAGAATCAGGCCTTAT 419
Query 430 GTTAGTCAAGTTCTCATGTATGAAGATCCAGTCCGCCAAGATGCTGCTCGAAAGACTGTT 489
|| || ||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 420 GTCAGCCAAGTTCTCATGTATGAAGATCCAGTCCGTCAAGAAGCTGCTCGAAAGACCGTT 479
Query 490 CCTAAAGACGAGCTTGAGGAGAAAGCATTGGTTTCTCTGGCCAAGGAAGGGAATTTTGAG 549
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 480 CCTAAAGACGAGCTTGAGGAGAAAGCATTGGTTTCTCTGGCCAAGGAGGGGAATTTCGAG 539
Query 550 CCATCGAAAGAGGAAAGAGACTACGCTTTCCTGCTTCAGCTTCTTTTCTGGTTCAAAAAA 609
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 540 CCATCGAAAAAGGAAAGAGACTACGCTTTCCTGCTTCAGCTTCTTTTCTGGTTCAAAAGA 599
Query 610 TCCTTCAGATGGGTCAATGAACCTCCTTGTGACTTTTGTGGTAACAAAACCATAGGCCAG 669
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 600 TCCTTCAGATGGGTCAATGAACCTCCATGTGACTTTTGTGGTAACAAAACCATAGGCCAG 659
Query 670 GGGATGGGAAACCCACTTACCTCGGAGCTTGCTTATGGAGCAAATCGAGTTGAAATATAT 729
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GGGATGGCAAACCCACTTACCTCGGAGCTTGCTTATGGAGCAAATCGAGTTGAAATATAT 719
Query 730 CGCTGTACCATGTGTCCAACAACTACTCGATTCCCTCGGTACAACGATCCGCTAAAGCTC 789
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 720 CGCTGTACCATGTGTCCAACAATTACTCGATTCCCTCGGTACAACGATCCACTAAAGCTC 779
Query 790 GTAGAAACAAAGAAAGGTCGTTGCGGAGAGTGGGCGAACTGCTTTACGCTATACTGCCGC 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GTAGAAACAAAGAAAGGTCGTTGCGGAGAGTGGGCGAACTGCTTTACGCTATACTGCCGC 839
Query 850 ACGTTTGGCTATGATTCTCGTTTGATAATGGACTTCACAGATCACGTGTGGACAGAATGC 909
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 840 TCGTTTGGCTATGATTCTCGTTTGATAATGGACTTCACAGATCACGTCTGGACAGAATGC 899
Query 910 TACTCTCACTCGTTAAAGAGGTGGATCCATCTTGACCCTTGTGAAGGAGTGTATGATAAA 969
|||||||| || |||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 900 TACTCTCATTCTTTAAAGAGATGGATCCATCTTGACCCTTGTGAAGGAGTGTATGACAAA 959
Query 970 CCCATGTTATATGAGAAAGGATGGAATAAAAAATTGAATTATGTCATTGCGATTTCTAAG 1029
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 960 CCCATGTTATATGAGAAAGGATGGAACAAAAAATTGAATTATGTCATTGCGATTTCCAAG 1019
Query 1030 GACGGGGTTTGTGATGTTACCAAGCGATATACAAAGAAATGGCATGAGGTTTTATCTAGA 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GACGGGGTTTGTGATGTTACCAAGCGATATACAAAGAAATGGCATGAGGTTTTATCTAGA 1079
Query 1090 AGAACTCTCACAACTGAATCATCTTTGCAAGATGGTCTTCGAACCCTGACAAGGGAACGA 1149
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 AGAACTCTCACAACTGAATCATCTTTGCAAGATGGTCTTCGAACCCTGACAAGGGAACGG 1139
Query 1150 CGACGTAGCTTAATGTTTGAATCTCTATCTAAGCTTGAATTACGAGACAGAAATGAGCAG 1209
||| ||||||||||| |||||| || || |||||||||| ||||||||||| ||||||
Sbjct 1140 CGAAGTAGCTTAATGGACGAATCTTTACCTGAGCTTGAATTCCGAGACAGAAAAGAGCAG 1199
Query 1210 GAAGAACTAGAGAGAAATCTGCATTCCGCAGATAATGCCTCAGTTTCTTTACCCGGAAGG 1269
|||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1200 GAAGAACTCGAGAGAAATCTGCATTCCCCAGATGATGCCTCAGTTTCTTTACCCGGAAGG 1259
Query 1270 CAAAGTGGGGACAGGGAATGGCGTATTATGAGATCAGAATTTGGTTCAGACGAAAACTCA 1329
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1260 CAAAGTGGGGACAGGGAATGGCGCATTATGAGATCAGAATTTGGTTCAGACGAAAACTCC 1319
Query 1330 TCTGTCAGCTCTTCCTCTTGCCCAGTTCGCAAATGCGTTGATGACCATGTGACCAACATT 1389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TCTGTCAGCTCTTCCTCTTGCCCAGTTCGCAAATGCGTTGATGACCATGTGACCAACATT 1379
Query 1390 TATGACTCGTTTCTACCTATCCTTACTCAGTTCGTTGAGGACGGCTTACCTGTAGCAAGA 1449
|||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1380 TATGACTCGTTTCTGCCTATCCTGACTCAGTTCGTTGAGGACGGCTTACCCGTAGCAAGA 1439
Query 1450 ACAAATGAGGTACTTAAGATGATCAAGCAAGTCCTAGTGGATCTGAAGAATGCGCCTTAC 1509
||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1440 GCAATTGAGGTACTTAAGATGATCAAGCAAGTCCTAGTGGATCTAAAGAATACGCCTTAC 1499
Query 1510 AAAACAAGGAAGGCTCGATTGACTTTAGATTCAGATAACTCAAGTTCATTCCCGGAGCAG 1569
||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1500 AAAACGAGGAAGGCTCGCTTGACTTTAGATTCAGATAGCTCAAGTTCATTCCCAGAGCAG 1559
Query 1570 TTTCTTCCCGCACTAGGCGATTTGCTTCTCGCTCTTTCTTTAAAGAGCGAGAGAGACACA 1629
||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1560 TTTCTGCCCGCACTAGGTGATTTGCTTCTCGCTCTTTCTTTAAAGAGCGAGCGAGACACA 1619
Query 1630 AACGGTAAAAGTGTCACAATATCCGTAGACGGGAAA-CTCACTAAAACTGCTATAGCATT 1688
|||| ||||||||| ||| ||| | | ||||||||| || || |||||||||||||||||
Sbjct 1620 AACGATAAAAGTGTTACACTATGCTTGGACGGGAAACCT-ACAAAAACTGCTATAGCATT 1678
Query 1689 GCCAGTTGCATTGGACGCGTTAAGGGAACTTGTTGCTGACCTCAGCAAATACCAAAACTT 1748
|||||||||||||||||| || |||||||| || |||||||||||||||| |||||||||
Sbjct 1679 GCCAGTTGCATTGGACGCTTTGAGGGAACTGGTCGCTGACCTCAGCAAATGCCAAAACTT 1738
Query 1749 AAACAAAGATTCACTGTCTTTTCCACTTGTTAAACAGAACAGGGTATGCTCTGGTTCTGT 1808
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1739 AAACAAAGATTCACTGTCTTTTCCACTTCTTAAACAGAACAGGGTATACTCTGGTTCTGT 1798
Query 1809 CCTCGCAAGTGGTGAAGAGCTTCCTTCTGGCATTGCAACCGCAGCTTTTGATGGAATCCA 1868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 CCTCGCAAGTGGTGAAGAGCTTCCTTCTGGCATTGCAACCGCAGCTTTTGATGGAATCCA 1858
Query 1869 AGAGTCCAAATGGGAAGAACCAAATGGTGCAAAAGGCTGTTGGATCGTGTACAAAACACT 1928
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 AGAATCCAAATGGGAAGAACCAAATGGTGCAAAAGGCTGTTGGATCGTGTACAAAACACT 1918
Query 1929 CTACAACCAGATGCACCAACTCATAGCATACGA-ACTCATGTCTGCTAATGATGCCCCAG 1987
||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||
Sbjct 1919 CTACAACCAGATGCACCAACTCATAGCATACGAGA-TCATGTCTGCAAATGATGCCCCAG 1977
Query 1988 AGAGAGACCCCAAAGATTGGATTCTTGAAGGAAGTAACGATGGTGGTTCGACATGGTGTG 2047
|||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||
Sbjct 1978 AGAGAGACCCCAAAGATTGGGTTCTTGAAGGGAGTAACGATGGTGGATCGACATGGTGTG 2037
Query 2048 TCCTAGACAAGCAAACTAGTCAGGTATTCGAGGAACGGTTCCAACGCAAATCCTACAAAA 2107
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2038 TTCTAGACAAGCAAACTAGTCAGGTATTCGAGGAGCGGTTCCAACGCAAATCCTACAAAA 2097
Query 2108 TAACTACACCTGGATTCCAAGCAAATCTTTTCAGGTTCCGGTTTTTAAGTGTACGAGACG 2167
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2098 TAACAACACCTGGATTCCAAGCAAATCTTTTCAGGTTCCGGTTTTTAAGTGTACGAGACG 2157
Query 2168 TGAATTCGACCTCGAGACTACAACTAGGGAGCATCGATCTGTACAGAAGTCACCAGTGAT 2227
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 2158 TGAATTCGACCTCGAGACTACAACTAGGGAGCATCGATCTGTACAGAAGCCACCAATAAT 2217
Query 2228 TTAATGATGCATTCATGCACATCAAATGTATAAATATTCCAAAAACATCAATTTGTTTTG 2287
| || | | || ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 2218 TCAA-G-T--AT----GCACATCAAATGTATAACTGTTCCAAAAACATCAATTTGTTTTG 2269
Query 2288 TCTTCACTTTCTGCACATTGATGTATTCCGTATTCGTGAGGGAATTGGCCTTTGCTATT 2346
|||||||||| |||| ||||||||||||| | | |||||||||||||||||||| ||||
Sbjct 2270 TCTTCACTTTGTGCAGATTGATGTATTCCTTGTACGTGAGGGAATTGGCCTTTGTTATT 2328
> Ahg952219 jgi|Araly1|952219|scaffold_46800001.1
Length=266
Score = 167 bits (90), Expect = 4e-40
Identities = 102/108 (94%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 35 TTTTGGAATTTCAATAATCTGAGAAAATGGTTGCTCGGAAATTTGTCGTCCGCCATGAAG 94
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1 TTTTGGAATTTCAATAATCTGAGAAAATGGTTGCTCGCAAATTCGTCGTCCGCCATGAAG 60
Query 95 ATTCGAGCTTCGATGTCGACTACAACACTGAAGATGGTCTTGAGGTTT 142
|||| |||||||||||||||||| ||||||||||||| ||| ||||||
Sbjct 61 ATTCAAGCTTCGATGTCGACTACGACACTGAAGATGGCCTTCAGGTTT 108
> Ahg495015 jgi|Araly1|495015|fgenesh2_kg.8__831__AT5G49555.1
Length=1853
Score = 93.5 bits (50), Expect = 7e-18
Identities = 61/66 (92%), Gaps = 1/66 (2%)
Strand=Plus/Plus
Query 2372 AGAGGCTTACAGACTCATGGTCACAGTTGTTATCAACGAATAATAAGCC-TCCACGTGTA 2430
||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1752 AGAGGCTTACAGAAGCATGGACACAGTTGTTATCAACGAATAATAAGCCCTCCACGTGTA 1811
Query 2431 ACTTAA 2436
|||||
Sbjct 1812 GCTTAA 1817
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91873670940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5