BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G49600.1

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg949461 jgi|Araly1|949461|scaffold_801348.1                        778    0.0  


> Ahg949461 jgi|Araly1|949461|scaffold_801348.1
Length=564

 Score =  778 bits (421),  Expect = 0.0
 Identities = 487/519 (94%), Gaps = 3/519 (1%)
 Strand=Plus/Plus

Query  1    ATGGTGACAGAAGCCATGAAAGCCAAGGCAGAGGTGTACCATGGAGACAAGACATGCAGA  60
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  22   ATGGTGACAGAAGCCATGAAAGCCAAGGCAGAGGTGTACCATGGAGACAAGATATGCAGA  81

Query  61   GAGAAATTCGGTTCGCTTTTATCCGAAATCGGGTTACCAAACCGGCTCCTTAGTAACAAG  120
            |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  82   GAGAAATTCGGTTCACTTTTATCCGAAATCGGGTTACCCAACCGGCTCCTTAGTAACAAG  141

Query  121  GAGATCAAAGAATGTGGATACGTGAAGGACACGGGTTTCGTTTGGTTAAAGCACAAGGAG  180
            |||||| ||||||||||||||||||| ||||||||||| || ||||||||||||||| ||
Sbjct  142  GAGATCGAAGAATGTGGATACGTGAAAGACACGGGTTTTGTGTGGTTAAAGCACAAGAAG  201

Query  181  AAGAAGAAAGAAGATCAGAAAAGGAGATATCAAGACTTGTTAAGATTCGATAACGTTGTC  240
            |||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| 
Sbjct  202  AAGAAGAAAGAAGACCAGAAAAGGAGATATCAAGACTTGTTTAGATTTGATAACGTTGTG  261

Query  241  GTATGTTTCGAAGATGAAGTCACTGCGTATTTCGAGCCTAACAGGATCAAGAAACTCACT  300
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  262  GTATGTTTCGAAGATGAAGTCACTGCATATTTCGAGCCTAACAGGATCAAGAAACTCACT  321

Query  301  GGGGTTAAGGCTAAGGAGTTCATGGTTTGGATCTCGCTTGGCGAGATTCAAGTGAACCGT  360
            ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct  322  GGGGTTAAGGCTAAGGAGTTCATGGTTTGGATCTCACTCGGCGAGATTCAAGTGAACCGT  381

Query  361  TCCTCTGGTTTGATTACATTTAAGACTGAGGTCGGTTTATTGTCCAAGTCATTGCCTTTG  420
            ||||||||||||||||| || |||||  |||||||||||||||| ||||| |||||||||
Sbjct  382  TCCTCTGGTTTGATTACGTTCAAGACACAGGTCGGTTTATTGTCTAAGTCGTTGCCTTTG  441

Query  421  TCGGTGTTTGAAGACGTTCATGGTGATGATCATGATCTCAAGGAGAAGCCaaaaaaaG--  478
            || ||||||||||||||||| |||||||||||||||||||||||||||||| |||| |  
Sbjct  442  TCAGTGTTTGAAGACGTTCAGGGTGATGATCATGATCTCAAGGAGAAGCCAGAAAAGGTT  501

Query  479  -AACTAAAACTCAACAAAACCAAAATCTATTTGTACTAA  516
             ||| |||| |||||||||||| ||| ||||||||||||
Sbjct  502  CAACCAAAATTCAACAAAACCACAATATATTTGTACTAA  540



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18772549788


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5