BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49610.1
Length=1456
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949462 jgi|Araly1|949462|scaffold_801349.1 1814 0.0
Ahg949461 jgi|Araly1|949461|scaffold_801348.1 69.4 7e-11
> Ahg949462 jgi|Araly1|949462|scaffold_801349.1
Length=1117
Score = 1814 bits (982), Expect = 0.0
Identities = 1076/1121 (96%), Gaps = 7/1121 (1%)
Strand=Plus/Plus
Query 184 GTATTTGATTGATCTGTTAATGGATAACCAAAAAGGTGCTCTCTTTCCCGATGAGGTTAT 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 GTATTTGATTGATCTGTTAATGGATAACCAAAAAGGTGCTCTCTTTCCCGATGAGGTTAT 61
Query 244 TCTCCAGATTCTTGCTAGATTACCTGTTAAATCTCTCTTCAGGTTCAAATCCGTTTGCAA 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 TCTCCAGATTCTTGCTAGATTACCTGTTAAATCTCTCTTCAGGTTCAAATCCGTTTGCAA 121
Query 304 ATCATGGTACAGATTACCTTCTGACAAATATTTCACTTCCTTGTTCAATCAAC-TCTCTG 362
||| ||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||
Sbjct 122 ATCTTGGTACAGATTACCTTCTGACAAGTACTTCACTTCCTTGTTCAA-CAAAGTCTCTG 180
Query 363 TAAAAGAGCAATTGCTTGTGGCTGAAGTATCAGATTCTTCTAGTTTGATCTGTGTTGATA 422
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TAAAAGATCAATTGCTTGTGGCTGAAGTATCAGATTCTTCTAGTTTGATCTGTGTTGATA 240
Query 423 ATCTGAGAGGTGTTTCTGAGTTATCATTGGATTTTGTTAGAGATAGGGTGAGGATTAGGG 482
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATCTGGGAGGTGTTTCTGAATTATCATTGGATTTTGTTAGAGATAGGGTGAGGATTAGGG 300
Query 483 TTTCTTCTAATGGTTTGTTGTGTTGTTCAAGCATTCCTGAAAAGGGTGTTTACTATGTTT 542
|||||| ||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 301 TTTCTTGTAATGGTTTATTGTGTTGCTCTAGCATTCCTGAAAAGGGTGTTTACTATGTTT 360
Query 543 GTAATCCGTCGACTAGAGAGTATAGGAAATTGCCTAAGAGTCGAGAAAGACCTGTTACTC 602
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 361 GTAATCCGTCGACTAGAGAGTATAGGAAATTGCCTAAGAGTCGAGAAAGACCCGTTACTC 420
Query 603 GGTTTTACCCTGATGGTGAGGCTACTCTTGTTGGTTTGGCTTGTGATTTGAGTAAGAACA 662
||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| ||| |
Sbjct 421 GGTTTTATCCTGATGGTGAGGCAACTCTTGTTGGCTTGGCTTGTGATTTGAGTAGGAATA 480
Query 663 AGTTTAATGTGGTGTTGGCTGGTTACCATAGGTCTTTTGGTCAGAGACCTGATGGGAGTT 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGTTTAATGTGGTGTTGGCTGGTTACCATAGGTCTTTTGGTCAGAGACCTGATGGGAGTT 540
Query 723 TCATTTGCTTGGTGTTTGATTCTGAGAGTAACAAATGGAGGAAGTTTGTTTCGGTGTTAG 782
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 541 TCATTTGCTTGGTGTTTGATTCTGAGACTAACAAATGGAGGAAGTTTGTTTCGGTGTTAG 600
Query 783 AAGAATGTAGTTTCACACACATGAGTAAGAACCAAGTGGTGTTTGTTAATGGGATGCTTC 842
||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||||
Sbjct 601 AAGAATGTAGTTTCACACATATGAGTAAGAACCAAGTTGTGTTTGTTAATGGAATTCTTC 660
Query 843 ATTGGTTGATGAGTGGTTTGTGTTATATACTTGCGCTTGATGTTGAACATGATGTGTGGA 902
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 661 ATTGGTTGATGAGTGGCTTGTGTTATATACTTGCACTTGATGTTGAACATGATGTGTGGA 720
Query 903 GAAAGATTTCTTTGCCCGATGAGATTAGAAT-TGGGAATGGTGGTGGTAATCGGGTTTAT 961
||||||||||||| || |||||||||||| | ||||||||||||| |||||||| |||
Sbjct 721 GAAAGATTTCTTTACCTGATGAGATTAGA-TGTGGGAATGGTGGT---AATCGGGTCTAT 776
Query 962 CTCTTGGAATCCGATGGGTTTTTGTCGGTGATTCAGTTATCAGATGTATGGATGAAGATT 1021
|| |||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct 777 CTATTGGAATCCGATGGGTTTTTGTCGGTGATTCAACTATCAGATGGATGGACGAAGATT 836
Query 1022 TGGAAGATGAGTGAGTATGAGACTGAAACTTGGAGTGTTGTTGATAGCATAAGTTTAAGG 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TGGAAGATGAGTGAGTATGAGACTGAAACTTGGAGTGTTGTTGATAGCATAAGTTTAAGG 896
Query 1082 TGTATTAAAGGCTTGGTACCTGGAATCTTCCCGATTTGTCAGACCGGTGAGTATGTTTTC 1141
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 897 TGTATTAAAGGATTGGTACCTGGAATATTCCCGATTTGTCAGACCGGTGAGTATGTTTTC 956
Query 1142 TTGGCTACTCATAAACAGGTTTTGGTGTATCAAAGACGAAGTAAGTTATGGAAAGAGATG 1201
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 957 TTGGCTACTCATAAACAGGTTTTGGTGTATCAAAGACGAAGTAAGTTATGGAAAGAAATG 1016
Query 1202 TTTTCTGTAAAAGGAAGCTCTTCTCTGCCTTTGTGGTTCTCTGCTCACGCCTTTCGCAGC 1261
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TTTTCTGTGAAAGGAAGCTCTTCTCTGCCTTTGTGGTTCTCTGCTCACGCCTTTCGCAGC 1076
Query 1262 ACCATAGTACCCTGTAATTAACATGTTAATGTTGCCTTCTC 1302
||||||||||||||||||||||||||| ||||||||||||
Sbjct 1077 ACCATAGTACCCTGTAATTAACATGTTTGTGTTGCCTTCTC 1117
> Ahg949461 jgi|Araly1|949461|scaffold_801348.1
Length=564
Score = 69.4 bits (37), Expect = 7e-11
Identities = 41/43 (95%), Gaps = 0/43 (0%)
Strand=Plus/Minus
Query 1414 AGTTGATTTCTTCTGTTGCTTTTAGTACAAATAGATTTTGGTT 1456
||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 561 AGTTGATTTCTTCTGTTGCTTTTAGTACAAATATATTGTGGTT 519
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54469050350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5