BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49620.2
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495021 jgi|Araly1|495021|fgenesh2_kg.8__837__AT5G49620.1 1055 0.0
Ahg902931 jgi|Araly1|902931|Al_scaffold_0003_59 110 3e-23
> Ahg495021 jgi|Araly1|495021|fgenesh2_kg.8__837__AT5G49620.1
Length=1001
Score = 1055 bits (571), Expect = 0.0
Identities = 663/706 (94%), Gaps = 12/706 (2%)
Strand=Plus/Plus
Query 491 AGATGGTCTAAGATTGCACAATATTTACCAGGAAGAACGGATAACGAGATCAAAAACTAT 550
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 304 AGATGGTCTAAGATTGCACAATATTTACCAGGAAGAACTGATAACGAGATCAAAAACTAT 363
Query 551 TGGAGAACACGTGTTCAAAAGCATGCAAAACAGCTTAAATGCGACGTGAACAGTCAACAA 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 TGGAGAACACGTGTTCAAAAGCATGCAAAACAGCTTAAATGCGACGTGAACAGTCAACAA 423
Query 611 TTTAAAGACACCATGAAGTATCTTTGGATGCCTCGGCTCGTAGAAAGGATCCAAGCCGCG 670
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 424 TTTAAAGACACCATGAAGTATCTTTGGATGCCTCGGCTCGTAGAGCGTATCCAAGCCGCC 483
Query 671 TCCATCG-GGTCTGTTTCCATGTCATCTTGCGTCACCACCTCCTCAGATCAGTTCGTGAT 729
|| | || ||| |||||||| ||| ||||||||||||| ||||||||||||||||||| |
Sbjct 484 TCTA-CGAGGTTTGTTTCCACGTCCTCTTGCGTCACCAACTCCTCAGATCAGTTCGTGGT 542
Query 730 caacaacaacaacaccaacaacGTGGATA-ATTTGGCTTTAATGAGTAACCCTAATGGTT 788
|||||||||||||||||||||| |||| | |||||| ||| || ||||||||||||||||
Sbjct 543 CAACAACAACAACACCAACAACATGGA-ACATTTGGGTTTTATAAGTAACCCTAATGGTT 601
Query 789 ACATCACGCCGGATAATTCCAGCGTGGCAGTATCTCCTGTATCAGATTTGACGGAGTGTC 848
||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||
Sbjct 602 ACATCACGCCGGATAATTCCAACGTGGCAGTATCTCCTGTATCAGATTTGTCGGATTGTC 661
Query 849 A-AGTGAGTAGTGAAGTGTGGAAGATTGGTCAGGATGAGAATTTGGTGGATCCAAAAATG 907
| | |||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 662 ATA-TGAGTAGTGAAGTGGGGAAGATTGGTCAGGATCAGAATTTGGTGGATCCACAAAT- 719
Query 908 A-CATCGCCGAATTATATGGATAATAGCAGTGGACTATTAAACGGAGATTTTACGAAGAT 966
| |||||| ||||||| ||||||||| | |||||||||||||||||| || ||||||||
Sbjct 720 ATCATCGCAGAATTATTTGGATAATAACTGTGGACTATTAAACGGAG-TT--ACGAAGAT 776
Query 967 GCAAGATCAAAGTGACCTTAATTGGTTTGAAAATATTAATGGGATGGTACCAAATTATTC 1026
|||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||
Sbjct 777 GCAAGATCAAAGTGACCTTAATTGGTTTGAAAATGTTAATGGGATGATACCTAATTATTC 836
Query 1027 GGACAGTTTTTGGAACATTGGAAATGATGAAGACTTCTGGCTCTTACAACAACATCAACA 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GGACAGTTTTTGGAACATTGGAAATGATGAAGACTTCTGGCTCTTACAACAACATCAACA 896
Query 1087 AGTCCACGACAATGGAAGCTTCTGAATAGACAAGAAGCTATTTTACAAAGTAAAGGGAAA 1146
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 897 AGTCCTCGACAATGGAAGCTTCTGAATAGACAAGAAGCTATTATACAAAGTAAAGGGAAA 956
Query 1147 ATACAAAGCTTCTGAATTTAAAAGTGTGAAAGGAATTTGTTATAAA 1192
|||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 957 ATACAAAGCTTCTGAATT-AAAAGTGTGAAAGGAGTTTGTTATAAA 1001
Score = 425 bits (230), Expect = 3e-118
Identities = 281/306 (92%), Gaps = 2/306 (1%)
Strand=Plus/Plus
Query 146 ATGGGTGACAAAGGAAGGAGCTTAAAGATCAACAAGAACATGGAGGAATTCACGAAAGTG 205
|||| |||||||| ||| |||||||| |||||||| ||||||||||| ||| |||| |||
Sbjct 1 ATGGATGACAAAGCAAGAAGCTTAAACATCAACAAAAACATGGAGGATTTCGCGAACGTG 60
Query 206 GAAGAAGAAATGGACGTAAGGAGAGGTCCATGGA-CAGTTGAGGAAGATTTAGAGCTCAT 264
||||||||||| || |||| ||||||||||||| || ||||||||||||| ||||||||
Sbjct 61 GAAGAAGAAATATACCTAAGAAGAGGTCCATGGACCA-TTGAGGAAGATTTCGAGCTCAT 119
Query 265 CAATTACATTGCTAGTCATGGTGAAGGTCGATGGAACTCTCTCGCTCGTTGCGCCGAACT 324
|||||||||||||| |||||| |||||||||||||||||||||||||||||||| | |||
Sbjct 120 CAATTACATTGCTACTCATGGAGAAGGTCGATGGAACTCTCTCGCTCGTTGCGCAGGACT 179
Query 325 CAAAAGGACCGGAAAAAGCTGCAGACTTCGGTGGCTGAACTATCTCCGACCAGATGTGCG 384
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 180 CAAAAGGACCGGAAAAAGCTGCAGACTTCGGTGGCTAAACTATCTTCGACCAGATGTCCG 239
Query 385 CCGTGGAAACATAACCCTCGAAGAACAACTCTTGATTCTTGAACTTCACACACGTTGGGG 444
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 240 CCGTGGAAACATAACCCTCGAAGAACAACTCTTGATTCTTGAACTTCACTCCCGTTGGGG 299
Query 445 CAATAG 450
|||||
Sbjct 300 TAATAG 305
> Ahg902931 jgi|Araly1|902931|Al_scaffold_0003_59
Length=609
Score = 110 bits (59), Expect = 3e-23
Identities = 172/224 (77%), Gaps = 17/224 (8%)
Strand=Plus/Plus
Query 207 AAGAAGAA-ATGG-AC-GTAAGGAGAGGTCCATGGAC-AGTTGAGGAAGA-TTTAGAGCT 261
|||||||| | || || || |||| ||| || ||||| | | || ||||| || | ||
Sbjct 56 AAGAAGAAGAAGGAACAGTGAGGAAAGGGCCTTGGACTA-TGGAAGAAGACTTCA-TCCT 113
Query 262 CATCAATTACATTGC-TAGTCATGGTGAAGGTCGATGGAACTCTCTCGCTCGTTG-CGCC 319
| | ||||||| | | || |||||||||||||| ||||||||| |||| | | | |
Sbjct 114 CTTTAATTACA-TCCTTAATCATGGTGAAGGTCTTTGGAACTCTGTCGC-CAAAGCCTCT 171
Query 320 GAACTCAAAA-GGACCGGAAAAAGCTG-CAGACTTCGGTGGCTGAACTATCTCCGACCAG 377
| | |||| | ||||||||||| || | | || |||||||||||||||||||||||||
Sbjct 172 G-GTTTAAAACGTACCGGAAAAAGTTGTC-GGCTCCGGTGGCTGAACTATCTCCGACCAG 229
Query 378 ATGTGCGCCGTGGAAACATAACC-CTCGAAGAACAACTCTTGAT 420
||||| | || || ||||||||| || |||||||| || |||||
Sbjct 230 ATGTGAGGCGAGGGAACATAACCGCT-GAAGAACAGCTTTTGAT 272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45023164977
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5