BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49650.1
Length=1988
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495023 jgi|Araly1|495023|fgenesh2_kg.8__839__AT5G49650.1 2619 0.0
> Ahg495023 jgi|Araly1|495023|fgenesh2_kg.8__839__AT5G49650.1
Length=1858
Score = 2619 bits (1418), Expect = 0.0
Identities = 1738/1886 (92%), Gaps = 48/1886 (3%)
Strand=Plus/Plus
Query 14 ATTAGTGTCTGTTTTAAATGATCCTACCTTATAAAAACGACGACACATCTCTCTCTCGTC 73
||||||||||||||||||| |||| ||||||| |||| ||||||||||||||| | ||
Sbjct 1 ATTAGTGTCTGTTTTAAATTATCCAACCTTAT-AAAA--ACGACACATCTCTCT-T--TC 54
Query 74 TTCTTCTTCCTCTAAACCTGTGAAAAACTTTGGATCAATCAACAATGGCGGATCTCTCTC 133
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 55 GTCTTCTTCCTCTAAACCTGTG--AAGCTTTGGATCAATCAACAATGGCGGATCTCTCTC 112
Query 134 TTCCTCCCGATTCCCTCTTCCTCGGCTTCGACAGCTCTACCCAGTCAATGAAAGCAACTG 193
|||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 113 TTCCTCCCGATTCCATCTTCCTCGGCTTCGATAGCTCTACCCAGTCATTGAAAGCAACTG 172
Query 194 TGTTGGATTCGAACCTGAACATTATCAAAACCGAACTCGTTCATTTCGATTCTGATCTTC 253
|||||||||| ||||| |||||| ||| |||||||||||||||||| |||||||||||||
Sbjct 173 TGTTGGATTCAAACCTAAACATTGTCATAACCGAACTCGTTCATTTTGATTCTGATCTTC 232
Query 254 CTCAATACAAAACCAAAGACGGGGTTTACAGAGACACTACTGTAAACGGAAGAATCGTAT 313
|||| || ||||||||||| |||||||||||||||||||| || ||||| |||||||| |
Sbjct 233 CTCATTATAAAACCAAAGATGGGGTTTACAGAGACACTACCGTCAACGGTAGAATCGTCT 292
Query 314 CTCCAACTCTCATGTGGGTCGAAGCATTTGATCTCATTCTCCAGAAGCTCTCTAACGCCA 373
| ||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||
Sbjct 293 CACCAACTCTCATGTGGGTGGAGGCATTTGATCTCATTCTACAGAAGCTCTCTAATGCCA 352
Query 374 ATTTCGATTTCGCCAAAGTTATCGCTGTTTCAGGCAGCGGGCAACAACACGGTAGTGTGT 433
|||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 353 ATTTCGATTTCGGTAAAGTTATCGCGGTTTCGGGCAGCGGGCAACAACACGGTAGTGTGT 412
Query 434 ATTGGTCAAAAGGTAGTTCTGAGGTATTGAGATCATTGGATTCAAAGAGATCATTGAAAG 493
|||||||||| ||| ||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 413 ATTGGTCAAAGGGTGGTTCTGAGGTATTGAAATCATTGGATTCAAAGAGATGTTTGAAAG 472
Query 494 AACAACTCGAAAACGCTTTTTCGGTTAAGGAATCTCCTATATGGATGGATAGTAGTACTA 553
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 ATCAACTCGAAAACGCTTTTTCGGTTAAGGAATCTCCTATATGGATGGATAGTAGTACTA 532
Query 554 CATTGCAATGTAAAGAGATTGAGAATGCTGTTGGTGGAGCTATGGAGTTGTCGAAGATCA 613
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 533 CATTGCAGTGTAAAGAGATTGAGAATGCTGTTGGTGGAGCTATGGAGTTGTCGCAGATCA 592
Query 614 CTGGCTCTCGTGCTTATGAGCGGTTTACTGGTCCGCAGATACGGAAGCTTTTTA-TGACT 672
||||||||||||||||||||||||||||||| |||||||||||||||||||||| | | |
Sbjct 593 CTGGCTCTCGTGCTTATGAGCGGTTTACTGGCCCGCAGATACGGAAGCTTTTTACT-AGT 651
Query 673 CAGGGGGAGGTGTATAAGAGCACGGAGAGGATTTCGCTTGTTAGCTCTTTTATGGCGTCT 732
|||||||| |||| ||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 652 CAGGGGGATACGTATGAGAGCACGGAGCGGATTTCGCTTGTTAGTTCTTTTATGGCGTCT 711
Query 733 TTGTTGGTTGGAGATTATGCTTGTATTGATGAAACTGATGCTGCTGGGATGAATTTGATG 792
|||||| | ||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 712 TTGTTGATAGGAGATTATGCTTCTATTGATGAAACTGATGCAGCTGGGATGAATTTGATG 771
Query 793 GATATTGAGAAACGTTGTTGGTCTAAAGCTGCGTTAGAGGCTACAGCGACAGGTTTGGAG 852
|||||| ||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 772 GATATTAAGAAACGATGTTGGTCTAAAGCTGCTTTAGAGGCTACAGCTACAGGTTTGGAG 831
Query 853 GAGAAACTTGGGAAGTTAGCTCCAGCTTATGCTACTGCTGGTTCTATTTCTCAGTATTTT 912
||||||||||| |||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 832 GAGAAACTTGGAAAGTTAGCACCAGCTTATGCAACTGCTGGTTCCATTTCTCAGTATTTT 891
Query 913 GTTCAGAGGTTCGGTTTTGAAAAGAACTGTGTGGTTGTGCAGTGGTCGGGAGATAATCCT 972
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 892 GTTCAGAGGTTCGGTTTTGAAAAGAACTGCGTGGTTGTGCAGTGGTCAGGAGATAATCCT 951
Query 973 AATAGCTTGGCAGGTCTAACTCTTAGTACTCCTGGAGATCTGGCGATCAGTCTTGGAACC 1032
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 952 AATAGCTTGGCAGGTCTAACTCTTAGTACTCCTGGAGATCTGGCGATCAGTCTTGGGACC 1011
Query 1033 AGTGACACGG------T----ATT-T-G-----GG-ATTACCAAAGAACTTCAACCCAGT 1074
|||||||||| | ||| | | || ||||||||||||||||||||||||
Sbjct 1012 AGTGACACGGCAAGGCTCTTGATTCTTGTATTTGGGATTACCAAAGAACTTCAACCCAGT 1071
Query 1075 CTTGAGGGTCATGTGTTACCTAATCCTGTGGACCCTGAGAGTTATATGGTGATGTTGGTT 1134
|||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1072 CTTGAGGGCCATGTGTTACCTAATCCCGTGGACCCTGAGAGTTATATGGTAATGTTGGTT 1131
Query 1135 TACAAGAATGCTTCTCTCACCCGGGAAGAAATTCGTGACCGTTGTGCTGAGGGATCTTGG 1194
||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 1132 TACAAGAATGCTTCTCTCACCCGTGAAGAAATTCGTGATCGTTGCGCTGAGGGATCTTGG 1191
Query 1195 GATGTTTTTAATAAGTATTTGCAGCAAACACAGCCACTAAACAATGGGAAACTCGGCTTC 1254
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1192 GATGTTTTTAATAAGTATTTGCAGCAAACACAGCCGCTAAACAATGGGAAACTCGGCTTC 1251
Query 1255 TACTACACTGAAAATGAAATTCTGCCCCCACTTCCCGTTGGCTCTCATCGTTACATTCTT 1314
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1252 TACTACACTGAAAATGAAATTCTGCCCCCACTTCCCGTTGGCTCCCATCGTTACATTCTT 1311
Query 1315 GAGAACTTCTCTGGTGAGTCTCTTGAGGGTGTGAAGGAACAAGAGGTCGGTGAGTTCGAC 1374
||||||||||||||||| |||||||||||||||||||||| ||||| | |||||| |||
Sbjct 1312 GAGAACTTCTCTGGTGAATCTCTTGAGGGTGTGAAGGAACGAGAGGCCAATGAGTTTGAC 1371
Query 1375 CCTCCCTCAGAGGTTAGGGCATTGATTGAAGGTCAGTTTCTTTCAAAGCGGGCTCATACT 1434
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1372 CCTCCCTCAGAGGTTAGGGCATTGATTGAAGGTCAGTTTCTATCAAAGCGGGCTCATACC 1431
Query 1435 GAGAGATTTGGTATGCCCTCCCCTCCCCTCCGAATAATAGCAACCGGAGGTGCATCTGCT 1494
||||||||||| ||||| |||||||| ||||||||||||| || ||||| ||||| |||
Sbjct 1432 GAGAGATTTGGAATGCCTTCCCCTCCAATCCGAATAATAGCCACAGGAGGAGCATCAGCT 1491
Query 1495 AACGAGAATATC-TTGAGTCTGATCTCAGCAATCTTCGGATGTGATGTATATACTGTCCA 1553
|| ||||||||| || ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1492 AATGAGAATATCCTT-AGTCTGATCTCGGCAATCTTCGGATGTGATGTGTATACTGTCCA 1550
Query 1554 AAGGCCTGATTCAGCATCACTTGGAGCTGCACTAAGAGCTGCTCATGGCTGGCTCTGCAA 1613
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 TAGGCCTGATTCAGCATCACTTGGAGCTGCACTAAGAGCTGCTCATGGCTGGCTCTGCAA 1610
Query 1614 CAAAAAAGGAAGCTTTGTACCAATCTCAAATCTCTACGAAGGGAAATTGGAAACAACATC 1673
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1611 CAAAAAAGGAAGCTTTGTACCAATCTCAAATCTCTACGAAGGGAAATTGGAGACGACATC 1670
Query 1674 TCTGAACTGCAAGCTCAAGGTAAAAGCAGGAGACGCGAACATTGCTTCCACCTATGGTTT 1733
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||
Sbjct 1671 TCTGAACTGCAAGCTCAAGGTAAAAGCAGGAGACGCAAACATAGCTTCCACCTACGGATT 1730
Query 1734 GTTGATGAAGAAGAGGATGGAAATAGAGAACAAGCTTGTGGAGAAGTTAGGCCACTTCTG 1793
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1731 GTTGATGAAGAAGAGAATGGAAATAGAGAACAAGCTTGTGGAGAAGTTAGGCCACTTCTG 1790
Query 1794 AGAAGaaaaaaaCTCACTACTCAATAATTCAAATAACTTAAAGAGTTGAAAGAATAACAA 1853
| || || ||| ||||||||||| || |||| |||||||||| ||
Sbjct 1791 A-AATCAA----CTCTCTACTCAATAA---AA----------GAGTCGAAAGAATAAAAA 1832
Query 1854 GTTCTATCTACTAAAACTAAAAGACA 1879
|||| |||||||||||||||||||||
Sbjct 1833 GTTCCATCTACTAAAACTAAAAGACA 1858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74733060690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5