BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49690.1
Length=1736
Score E
Sequences producing significant alignments: (Bits) Value
Ahg357219 jgi|Araly1|357219|fgenesh1_pg.C_scaffold_8001006 1910 0.0
> Ahg357219 jgi|Araly1|357219|fgenesh1_pg.C_scaffold_8001006
Length=1548
Score = 1910 bits (1034), Expect = 0.0
Identities = 1256/1363 (92%), Gaps = 15/1363 (1%)
Strand=Plus/Plus
Query 41 ATGGTCGACAAGAGAGAAGAAGTTATGCACGTAGCCATGTTTCCATGGCTAGCTATGGGT 100
|||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGACGACAAGAAAGAAGAAGTTATGCACATAGCCATGTTTCCATGGCTAGCTATGGGT 60
Query 101 CATCTCCTTCCTTTTCTTCGTCTCTCCAAGTTACTAGCTCAAAAGGGTCACAAGATCTCT 160
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 61 CATCTCCTTCCTTTTCTTCGTCTATCCAAGTTACTAGCTCAAAAGGGTCACAAAATCTCT 120
Query 161 TTCATATCAACACCAAGAAACATCGAAAGACTTCCTAAATTACAATCAAACCTCGCCTCC 220
|||||||| |||||| |||||||| |||||||||| ||||||| |||||||||| |||||
Sbjct 121 TTCATATCTACACCACGAAACATCCAAAGACTTCCCAAATTACCATCAAACCTCTCCTCC 180
Query 221 TCCATCACCTTCGTCTCTTTCCCTCTCCCTCCCATCTCAGGCTTGCCTCCTTCTTCAGAA 280
|| || |||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 181 TCAATTACCTTCGTCTCTTTCCCTCTCCCTTCCATCTCTGGCTTGCCTCCTTCTTCAGAA 240
Query 281 TCATCCATGGACGTTCCTTACAACAAGCAACAGTCTCTTAAAGCCGCTTTTGATCTTCTT 340
|| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 TCCTCCATGGACGTACCTTACAACAAGCAACAGTCTCTTAAAGCCGCTTTCGATCTTCTT 300
Query 341 CAGCCACCGTTGAAAGAGTTTCTCCGACGGTCTTCTCCGGATTGGATCATATACGACTAT 400
||||||||||||| || |||||||||| ||| |||||||||||||||||||| |||||
Sbjct 301 CAGCCACCGTTGACGGAATTTCTCCGACTGTCGTCTCCGGATTGGATCATATATGACTAC 360
Query 401 GCTTCTCACTGGCTTCCTTCTATTGCGGCCGAGCTTGGAATCTCTAAGGCTTTCTTTAGT 460
||||||||||||||||| |||||||| |||||||||||||| || |||||||| |||
Sbjct 361 GCTTCTCACTGGCTTCCATCTATTGCAAAGGAGCTTGGAATCTCGAAAGCTTTCTTGAGT 420
Query 461 CTCTTTAACGCAGCTACTCTCTGTTTCATGGGACCGTCTTCGTCTTTGATTGAAGAAAT- 519
|||||||||||||||||||||||||| ||||||||||||||||| ||||||| || |||
Sbjct 421 CTCTTTAACGCAGCTACTCTCTGTTTTATGGGACCGTCTTCGTCGTTGATTG-AGGAATC 479
Query 520 TAGATCAACGCCGGAAGATTTCACGGTGGTGCCACCGTGGGTCCCGTTCAAGTCAAACAT 579
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||
Sbjct 480 TAGATCAACGCCGGAAGATTTCACGGTGGTGCCACCGTGGGTTCCGTTTAAGTCAACCAT 539
Query 580 CGTGTTTCGTTATCATGAAGTTACTAGATACGTTGAGAAGACAGAGGAAGATGTAACCGG 639
||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||
Sbjct 540 CGTGTTTCGTTATCATGAAGTCAGTAGATACGTTGAGAAGACAGATGAAGATGTAACCGG 599
Query 640 AGTCTCTGACTCAGTTCGGTTTGGTTACTCGATTGACGAAAGCGATGCGGTTTTTGTCCG 699
|||||||||||| || |||||||||||| ||||||||| || |||||||||||||||||
Sbjct 600 AGTCTCTGACTCTGTCCGGTTTGGTTACACGATTGACGGGAGTGATGCGGTTTTTGTCCG 659
Query 700 TAGCTGTCCGGAGTTTGAACCGGAATGGTTTGGTTTACTAAAAGACCTGTACCGTAAACC 759
||| ||||| ||||||||||||||||||||| |||||||| |||| |||||||||||||
Sbjct 660 TAGTTGTCCCGAGTTTGAACCGGAATGGTTTAGTTTACTACAAGATTTGTACCGTAAACC 719
Query 760 GGTATTTCCAATCGGGTTT-TTGCCTCCGGTTATTGAAGACGACGATGCCGTTGATACTA 818
||| ||||||||||||||| || ||||| ||||||||||| ||||| || ||||||||
Sbjct 720 GGTTTTTCCAATCGGGTTTCTT-CCTCCCGTTATTGAAGATGACGA---CGATGATACTA 775
Query 819 CATGGGTTCGTATAAAGAAGTGGCTCGACAAGCAACG-GCTTAATTCAGTTGTTTACGTG 877
||||||||||||||||| ||||||||||||||||||| | |||| ||||| |||||||||
Sbjct 776 CATGGGTTCGTATAAAGGAGTGGCTCGACAAGCAACGAG-TTAACTCAGTGGTTTACGTG 834
Query 878 TCACTTGGCACCGAAGCGAGTCTTCGTCATGAGGAAGTAACTGAGCTAGCTCTTGGGTTA 937
|||||||||||||||||||||||||||| ||||||| | || |||||||||||||||||
Sbjct 835 TCACTTGGCACCGAAGCGAGTCTTCGTCGTGAGGAACTCACCGAGCTAGCTCTTGGGTTG 894
Query 938 GAGAAGTCAGAGACACCGTTCTTTTGGGTCCTAAGGAACGAGCCAAAGATTCCAGATGGG 997
|||||||||||||| || ||||||||||| ||||||||||||||| |||||||||| |||
Sbjct 895 GAGAAGTCAGAGACGCCTTTCTTTTGGGTTCTAAGGAACGAGCCACAGATTCCAGACGGG 954
Query 998 TTC-A-AAACACGAGTCAAGGGACGTGGAATGGTTCATGTTGGTTGGGTTCCACAAGTGA 1055
||| | || | |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 955 TTCGAGGAA-A-GAGTCAAGGGACGTGGCATGGTTCATGTTGGTTGGGTTCCACAAGTGA 1012
Query 1056 AAATACTTAGTCACGAGTCAGTAGGAGGGTTCTTGACACATTGTGGTTGGAACTCAGTGG 1115
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1013 AAATACTTAGTCACGAGTCAGTGGGAGGGTTCTTGACACATTGTGGTTGGAACTCAGTGG 1072
Query 1116 TGGAAGGGTTAGGGTTTGGTAAAGTTCCAATCTTTTTTCCGGTGTTGAATGAGCAAGGAC 1175
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1073 TGGAAGGGTTAGGGTTTGGTAAAGTTCCGATCTTTTTGCCGGTGTTGAATGAGCAAGGAC 1132
Query 1176 TTAATACGAGGTTGTTGCATGGGAAAGGACTTGGTGTTGAGGTTTCAAGAGATGAGAGAG 1235
|||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1133 TTAACACGAGGTTGTTGCAAGGGAAAGGACTTGGTGTTGAGGTTTTAAGAGATGAGAGAG 1192
Query 1236 ATGGGTCGTTTGATTCTGACTCGGTCGCTGACTCGATTAGGTTGGTGATGATTGATGATG 1295
|||| || |||| |||||| ||||||||||||||| |||| |||||||||||||||||||
Sbjct 1193 ATGGATCATTTGGTTCTGAATCGGTCGCTGACTCGGTTAGATTGGTGATGATTGATGATG 1252
Query 1296 CTGGCGAGGAGATAAGGGCTAAGGCTAAAG-TGATGAAGGATTTGTTTGGGAACATGGAT 1354
|||||||||||||||||| ||||| |||| ||||||||| ||||||||| |||||||||
Sbjct 1253 CTGGCGAGGAGATAAGGGAAAAGGC-AAAGGTGATGAAGGGTTTGTTTGGAAACATGGAT 1311
Query 1355 GAGAATATTCGTTATGTTGACGAACTTGTTAGGTTTATGAGAA 1397
||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1312 AAGAATATTCGTTATGTTGATGAACTTGTTGGGTTTATGAGAA 1354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65134318950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5