BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49700.1
Length=831
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949481 jgi|Araly1|949481|scaffold_801368.1 1225 0.0
Ahg471623 jgi|Araly1|471623|fgenesh2_kg.1__1577__AT1G14490.1 497 4e-140
> Ahg949481 jgi|Araly1|949481|scaffold_801368.1
Length=855
Score = 1225 bits (663), Expect = 0.0
Identities = 779/832 (94%), Gaps = 20/832 (2%)
Strand=Plus/Plus
Query 1 ATGAAAGGTGAATACAGAGAGCAAAAGAGTAACGAAATGTTTTCCAAGCTTCCTCATCAT 60
||||||||||||||||||||||||||||||||||||||||| ||||||||| | | ||||
Sbjct 21 ATGAAAGGTGAATACAGAGAGCAAAAGAGTAACGAAATGTTCTCCAAGCTT-C-C-TCAT 77
Query 61 caacaacaacagcaacaacaacaacaacaacaCTCTCTTACCTCTCACTTCCACCTCTCC 120
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 78 ---------------CAACAACAACAACAACACTCTCTTACCTCTCACTTCCACCTCTCC 122
Query 121 TCCACCGTAACCCCCACCGTCGATGACTCCTCCATCGAAGTGGTCCGACGTCCACGTGGC 180
||||||| ||| |||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 123 TCCACCGCAACACCCACCATCGATGACTCCTCCATCGAAGTCGTCCGACGTCCACGTGGC 182
Query 181 AGACCACCAGGTTCCAAAAACAAACCTAAACCACCCGTCTTCGTCACACGTGACACCGAC 240
||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 183 AGACCACCAGGTTCCAAAAACAAACCTAAACCACCTGTCTTCGTTACACGTGATACCGAC 242
Query 241 CCTCCTATGAGTCCTTACATCCTCGAAGTTCCTTCAGGAAACGACGTCGTCGAAGCCATC 300
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 243 CCTCCTATGAGTCCTTACATCCTCGAAGTTCCATCAGGAAACGACGTCGTTGAAGCCATC 302
Query 301 AACCGTTTCTGCCGCCGTAAATCCATCGGAGTCTGCGTCCTTAGTGGCTCTGGCTCTGTA 360
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 303 AACCGTTTCTGCCGCCGTAAATCCATCGGAGTTTGTGTCCTTAGTGGCTCTGGCTCTGTA 362
Query 361 GCTAACGTCACTTTACGTCAGCCATCACCGGCAGCTCTTGGCTCTACCATAACTTTCCAT 420
||||||||||||||||||||||| || |||||||||| |||||| ||||||||||||||
Sbjct 363 GCTAACGTCACTTTACGTCAGCCTTCTCCGGCAGCTCCTGGCTCAACCATAACTTTCCAC 422
Query 421 GGAAAGTTTGAtctcctctccgtctccgcaacgttt-ctccctcctccgcctcgtacttc 479
|||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 423 GGAAAGTTCGATCTCCTCTCCGTCTCCGCAAC-TTTCCTCCCTCCTCCGCCTCGTACTTC 481
Query 480 cttgtctcctcccgtTTCTAACTTCTTCACCGTCTCTCTCGCTGGACCTCAAGGACAAAT 539
|||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 482 CTTGTCCCCTCCCGTCTCTAACTTCTTCACCGTCTCTCTAGCCGGACCTCAAGGACAAAT 541
Query 540 CATCGGAGGGTTCGTCGCTGGTCCACTTATTTCGGCAGGAACAGTTTACGTCATCGCCGC 599
|||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 542 CATCGGTGGGTTCGTCGCTGGTCCACTTATCTCCGCAGGAACAGTTTACGTCATCGCTGC 601
Query 600 AAGTTTCAACAACCCTTCTTATCACCGGTTACCGGCGGAAGAAGAGCAAAAACACTCGGC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 AAGTTTCAACAACCCTTCTTATCACCGGTTACCGGCGGAAGAAGAGCAAAAACACTCGGC 661
Query 660 GGGGACAGGGGAAAGAGAGGGACAATCTCCGCCGGTCTCTGGTGGCGGTGAAGAGTCAGG 719
||||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 662 GGGGACAGGAGAAAGAGAGGGCCAATCTCCACCGGTGTCTGGTGGCGGTGAAGAGTCAGG 721
Query 720 ACAGATGGCGGGAAGTGGAGGAGAGTCGTGTGGGGTATCAATGTACAGTTGCCACATGGG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 ACAGATGGCGGGAAGTGGAGGAGAGTCGTGTGGGGTATCAATGTACAGTTGCCACATGGG 781
Query 780 TGGCTCTGATGTTATTTGGGCCCCTACAGCCAGAGCTCCACCGCCATACTAA 831
|||||||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 782 TGGCTCTGATGTTATTTGGGCCCCCACCGCCAGGGCTCCACCGCCATACTAA 833
> Ahg471623 jgi|Araly1|471623|fgenesh2_kg.1__1577__AT1G14490.1
Length=816
Score = 497 bits (269), Expect = 4e-140
Identities = 464/555 (84%), Gaps = 26/555 (5%)
Strand=Plus/Plus
Query 169 CGTCCACGTGGCAGACCACCAGGTTCCAAAAACAAACCTAAACCACCCGTCTTCGTCACA 228
||||||||||||||||| | |||||||||||||||||||||| | || |||| || | |
Sbjct 16 CGTCCACGTGGCAGACCTCGAGGTTCCAAAAACAAACCTAAAGCTCCAATCTTTGT-A-A 73
Query 229 CGTGACACCGACCCTCCTATGAGTCCTTACATCCTCGAAGTTCCTTCAGGAAACGACGTC 288
| || ||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 74 C----CATCGACCCTCCTATGAGTCCTTACATCCTCGAAGTGCCATCCGGAAACGACGTC 129
Query 289 GTCGAAGCCATCAACCGTTTCTGCCGCCGTAAATCCATCGGAGTCTGCGTCCTTAGTGGC 348
|| |||||| | ||||||||||||||||||||| ||||||| | |||||||| ||||||
Sbjct 130 GTTGAAGCCCTAAACCGTTTCTGCCGCCGTAAAGCCATCGGCTTTTGCGTCCTCAGTGGC 189
Query 349 TCTGGCTCTGTAGCTAACGTCACTTTACGTCAGCCATCACCGGCAGCTCTTGGCTCTACC 408
|| ||||| || ||| | ||||| || |||||||| || |||||||||| |||||| |||
Sbjct 190 TCAGGCTCCGTCGCTGATGTCACCTTGCGTCAGCCTTCTCCGGCAGCTCCTGGCTCAACC 249
Query 409 ATAACTTTCCATGGAAAGTTTGAtctcctctccgtctccgcaacgtttc-tccctcctcc 467
|| |||||||| |||||||| ||||| ||||| |||||||| || |||| ||||||||||
Sbjct 250 ATTACTTTCCACGGAAAGTTCGATCTTCTCTCTGTCTCCGCCAC-TTTCCTCCCTCCTCC 308
Query 468 gcctc-gtacttccttgtctcctcccgtT-TCTAACTTCTTCACCGTCTCTCTCGCTGGA 525
||||| | ||||||||| | |||||| || ||||| |||||||||||||||||||| |||
Sbjct 309 GCCTCAG-ACTTCCTTGCCCCCTCCC-TTCTCTAATTTCTTCACCGTCTCTCTCGCCGGA 366
Query 526 CCTCAAGGACAAATCATCGGAGGGTTCGTCGCTGGTCCACTTATTTCGGCAGGAACAGTT 585
||||| |||||| ||||||| || |||||||||||||| || || | || ||||| |||
Sbjct 367 CCTCAGGGACAAGTCATCGGTGGATTCGTCGCTGGTCCTCTCGTTGCCGCCGGAACTGTT 426
Query 586 TACGTCATCGCCGCAAGTTTCAACAACCCTTCTTATCACCGGTTACC-G--GCGGAAGAA 642
|||||| |||| | |||||||| |||||| | |||||||||||||| | ||||| |||
Sbjct 427 TACGTCGTCGCTACTAGTTTCAATAACCCTGCCTATCACCGGTTACCCGCTGCGGAGGAA 486
Query 643 GAGCAAA-AACACTCGGCGGGGACAGGGGAAAGAGAGGGACAATCTCCGCCGGTCTCTGG 701
||||||| || |||| |||| | |||||| | | | ||||| ||||||||||||||
Sbjct 487 GAGCAAAGAA-ACTCAGCGG--A-AGGGGA--G-G-GC--CAATCGCCGCCGGTCTCTGG 536
Query 702 TGGCGGTGAAGAGTC 716
|| |||| ||||||
Sbjct 537 AGGTGGTGGAGAGTC 551
Score = 84.2 bits (45), Expect = 1e-15
Identities = 58/64 (91%), Gaps = 2/64 (3%)
Strand=Plus/Plus
Query 760 ATGTACAGTTGCCACATGGGTGGCTCTGATGTTATTTGGGC-CCCTACAGCCAGAGCTCC 818
|||||||||||||||||||||||||||||||| |||||| | ||| || |||| ||||||
Sbjct 553 ATGTACAGTTGCCACATGGGTGGCTCTGATGTCATTTGGTCTCCCAAC-GCCAAAGCTCC 611
Query 819 ACCG 822
||||
Sbjct 612 ACCG 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30727071102
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5