BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49710.3
Length=1024
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495031 jgi|Araly1|495031|fgenesh2_kg.8__847__AT5G49710.1 1229 0.0
Ahg492383 jgi|Araly1|492383|fgenesh2_kg.7__1816__AT4G24590.1 505 3e-142
> Ahg495031 jgi|Araly1|495031|fgenesh2_kg.8__847__AT5G49710.1
Length=983
Score = 1229 bits (665), Expect = 0.0
Identities = 912/1023 (89%), Gaps = 50/1023 (5%)
Strand=Plus/Plus
Query 12 aaaacaaaacaaaGGAAGAGAATTTGCGCG---ACAACAACGATCGA-TC--AGTCGTCG 65
|||| |||| |||||||||||||||||||| |||||||||||| | || |||||||
Sbjct 1 AAAA-AAAAAAAAGGAAGAGAATTTGCGCGACAACAACAACGATC-AGTCGTCGTCGTCG 58
Query 66 TCTTCTCAGATCTTGTTCTTCAAAGGATTCTATGCCGCAAGAGCTTCGATTGTATCCTCT 125
|||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 59 TCTTCTCAGATCTTCTTCCTCAACGGATTCTATGCCGCAAGAGCTTCGATTGTATCCTCT 118
Query 126 CTGAGGATTGGGTAATACCCAATACCATGGATAACAATAGCGAGCGCAAAGGAAAACGAA 185
|||||||||||| || | ||| | || ||| || ||||||||||||||
Sbjct 119 CTGAGGATTGGG--AT-----GGA-CATCG---AC---AGCAAGAACAAAGGAAAACGAA 164
Query 186 TCGATAAGGATAATATTCGTGTCAAGCGGAAAACTTTGCAAGCTTTGCTCAATGATTGCC 245
| | || |||||||||||||| ||||||||||||||||||||||| ||| |||||||||
Sbjct 165 TTTACAAAGATAATATTCGTGTAAAGCGGAAAACTTTGCAAGCTTTACTCGATGATTGCC 224
Query 246 AGAGAGCCCTCGAGTTATTAAACTTAGCCGAAGTCAGTTCTGAAGACGATGAAGATGATA 305
|||||||||||||||| |||||| |||||||| ||||||||||||| |||| || |
Sbjct 225 AGAGAGCCCTCGAGTTGTTAAACCTAGCCGAACTCAGTTCTGAAGAAGATG-AG--G--- 278
Query 306 AAAGCACCGGCGAGGGAAGTGGGTCACAAGAGAGCAGGGGAGAAGTTTCTTCTTCCGATC 365
|||||||| |||| ||| ||||||||||||| | | | ||| | ||| |
Sbjct 279 AAAGCACCAACGAGAGAAATGGGTCACAAGAG-G-A---G-GAA---------T-CGAAC 322
Query 366 GA-GAAGATCCTGAAGCTGATGAATTATATGATCTCATCAAATCCAGGGTTGAATGTGAT 424
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 AAGGGAGATCCTGAAGCTGATGAATTATATGATCTCATCAAATCCAGGGTTGAATGTGAT 382
Query 425 GACTTCCTTGAAAAGATTGAGTCAGCCCAGGTTTCAGCGCCGCAACATCTTGCTGAAGAT 484
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 383 GACTTCCTTGAAAAGATTGAGTCAGCGCAGGTTTCAGCGCCGCAACATCTTGCTGAAGAT 442
Query 485 AGTAGCTCTTGGGATGTAGTTAGTGAAGATGATCTTTGGGATGATGAAACCATGGCTCAA 544
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 AGTGGCGCTTGGGATGTAGTTAGTGAAGATGATCTTTGGGATGATGAAACCATGGCTCAA 502
Query 545 AGGGAAGAAGATTATGTCCTTGTTAGAGAAGAAGATATAGCAGAGGGCATTGCATGTTTC 604
||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 503 AGGGAAGAAGATTATGTTCTTGTTAGGGAAGAAGATATAGCAGAGGGTATTGCATGTTTT 562
Query 605 ATGGCTACTTATTTACAATCACTTAAGCAGACAAAGGACTTGACTCCTGAGCAGCTTCAG 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 ATGGCTACTTATTTACAATCACTTAAGCAGACAAAGGACTTGACTCCTGAGCAGCTTCAG 622
Query 665 AAAGCACTTAGCAGGATGTTCTCAGTGAAGAATAGAAAGGGGAAACTTCGGAAAGCCTGG 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 AAAGCACTTAGCAGGATGTTCTCAGTGAAGAATAGAAAGGGGAAACTTCGGAAAGCCTGG 682
Query 725 GATGGAAGTAAGGTTGCTTACAACGTAGCGTCATGGAGCGCAACTGTTATAGGGATCTAT 784
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 683 GATGGAAGTAAGGTTGCTTACAACGTAGCATCGTGGAGCGCAACTGTTATAGGGATCTAT 742
Query 785 CAAAACCCCGTGATCCTGAGGGTTGCATCAAAGGCCTTTTGGGCGTCATGTCATGTAATA 844
||||| || |||||||| |||||||||||||||||||| |||||||| || |||||||||
Sbjct 743 CAAAATCCGGTGATCCTCAGGGTTGCATCAAAGGCCTTCTGGGCGTCGTGCCATGTAATA 802
Query 845 TCGAAGCTCGTTTGATTGACGATGACGCCTTCTCGAACACATCTC--GCCTGTGTACTGT 902
|||||||| || ||||||| || || ||||| |||| |||||||| |||||||| |||
Sbjct 803 TCGAAGCTTGTCTGATTGATGACGAAGCCTT-TCGAGCACATCTCTCGCCTGTGTGCTGC 861
Query 903 GATAACAGTTTAATTTGGGTTTCTCCATGATCTCTGTGAAT-ACAACTTCATCATGTATA 961
||||||||||||||||||||| ||||||||||| ||| ||| | || |||||||||||||
Sbjct 862 GATAACAGTTTAATTTGGGTTCCTCCATGATCTATGTAAATTA-AATTTCATCATGTATA 920
Query 962 AAGAATGCCATATGTAATTCCGTTCTTTACTGCAATATTCTTTCTGCATCATCGTTTATA 1021
||||||||||| ||| ||||||||||| |||||| |||||||||||||||| ||||||||
Sbjct 921 AAGAATGCCATTTGTGATTCCGTTCTTCACTGCACTATTCTTTCTGCATCACCGTTTATA 980
Query 1022 TCC 1024
|||
Sbjct 981 TCC 983
> Ahg492383 jgi|Araly1|492383|fgenesh2_kg.7__1816__AT4G24590.1
Length=1012
Score = 505 bits (273), Expect = 3e-142
Identities = 569/707 (80%), Gaps = 39/707 (6%)
Strand=Plus/Plus
Query 171 GCAAAGGAAAACGAATCGATAAGGATAATATTCGTGTCAAGCGGAAAACTTTGCAAG-CT 229
|||||||||| || |||||| ||||| ||| |||||||||||||| || |||| || |
Sbjct 155 GCAAAGGAAACCGCATCGATTTGGATAGTATCCGTGTCAAGCGGAAGACGTTGC-AGAAT 213
Query 230 TTGCTCAATGATTGCCAGAGAGCCCTCGAGTTATTA-AACTTAGCCGAAGTCAGTTCTGA 288
||||| | |||||||||||||| || ||| | || ||||| ||| | | | |||
Sbjct 214 CTGCTCGAGGATTGCCAGAGAGCTCTTGAGCTGCTAGAACTT-CCCG--G-C-G--ATGA 266
Query 289 AGACGAT---GAAGATGA-TAAAAGCACCGG-CGAGGGAAGTGG-GTCA-CAA--GAGAG 339
| ||| | ||| | || | || |||||| || ||| | || | | || | ||
Sbjct 267 AAACGGTGGCGAACA-GAGT-GAATCACCGGAGGA-GGAGGAGGAG-GAGGAATCG-GA- 320
Query 340 CAGGGGAGAAGT-TTCTTCTTCCGATCGAGAAGATCCTGAAGCTGATGAATTATATGATC 398
||||| || ||| ||||||||||||| || |||||||||||||||| |||| |||||||
Sbjct 321 CAGGGAAG-AGTCGTCTTCTTCCGATCCAGGAGATCCTGAAGCTGATAAATTTTATGATC 379
Query 399 TCATCAAATCCAGGGTTGAATGTGATGACTTCCTTGAAAAGATTGAGTCAGCCCAGGTTT 458
|||||||||| || ||||||||| ||||||| | ||||||||| || | ||| || ||||
Sbjct 380 TCATCAAATCTAGAGTTGAATGTCATGACTTTCGTGAAAAGATAGAATTAGCTCAAGTTT 439
Query 459 CAGCGCCGCAACATCTTGCTGAAGATAGTAGCTCTTGGGATGTAGTTAGTGAAGATGATC 518
||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 CAGTTCCCCAAGATCTTGCTGAAGATAGTAGCTCTTGGGATGTAGTTAGTGAAGATGAT- 498
Query 519 TT-TGGGATGATGAAACCATGGCTCAAAGGGAAGAAGATTATGTCCTTGTTAGAGAAGAA 577
|| |||| ||| ||| |||| ||||| |||||| |||||||| ||||||| ||||||
Sbjct 499 TTATGGGGTGAGGAAGGTATGGGTCAAATGGAAGATGATTATGTTGTTGTTAGGGAAGAA 558
Query 578 GATATAGCAGAGGGCATTGCATGTTTCATGGCTACTTATTTA-CAATCACTTAAGCAGAC 636
||||||||||| || ||||| |||||||||||||| |||||| || || |||||||||||
Sbjct 559 GATATAGCAGACGGTATTGCTTGTTTCATGGCTACATATTTATCA-TCCCTTAAGCAGAC 617
Query 637 AAAGGACT-TGA-CTCCTGAGCAGCTTCAGAAAGCACTTAGCAGGATGTTCTCAGTGAAG 694
|||||| | | | | ||||| |||||||||||||||||||||| |||||| |||||||||
Sbjct 618 AAAGGA-TAT-ATCACCTGATCAGCTTCAGAAAGCACTTAGCACGATGTTTTCAGTGAAG 675
Query 695 AATAGAAAGGGGAAACTTCGGAAAGCCTGGGATGGAAGTAAGGTTGCTTACAACGTAGCG 754
|| || |||||||| ||||| || || ||||| |||||||| ||| ||||||||||||
Sbjct 676 AAGAGGAAGGGGAAGCTTCGCAAGGCATGGGAGGGAAGTAAAGTTATTTACAACGTAGCA 735
Query 755 TCATGGAGCGCAACTGTTATAGGGATCTATCAAAACCCCGTGATCCTGAGGGTTGCATC- 813
|||||||||||||| | |||||||| ||||||||||| |||| ||||| |||||||
Sbjct 736 TCATGGAGCGCAACCGCGATAGGGATATATCAAAACCCTATGATACTGAGTATTGCATCC 795
Query 814 AAAGGCCTTTTGGGCGTCATGTCATG-TAATATCGAAGCTCGTTTGA 859
|||| | || ||| ||| || || | || |||| ||||| || |||
Sbjct 796 AAAG-CATTCTGGATGTCGTGCCAGGCTA-TATCAAAGCTTGTCTGA 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38084794083
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5