BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49720.1
Length=2360
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495032 jgi|Araly1|495032|fgenesh2_kg.8__848__AT5G49720.1 3762 0.0
Ahg889734 jgi|Araly1|889734|Al_scaffold_0007_1720 1288 0.0
> Ahg495032 jgi|Araly1|495032|fgenesh2_kg.8__848__AT5G49720.1
Length=2347
Score = 3762 bits (2037), Expect = 0.0
Identities = 2258/2363 (96%), Gaps = 21/2363 (1%)
Strand=Plus/Plus
Query 1 ACAtttcttcacttccacacacttttacttctttctctcttctcttctcttctcCAGATC 60
|||||||||||||| | ||||| ||||| || |||| ||| || |||||||||||||
Sbjct 1 ACATTTCTTCACTT-C-CACAC----ACTTC-TT-TCTC-TCT-TT-TCTTCTCCAGATC 49
Query 61 TG-ATCCCAAACCTTTGATTCATTGTTGTTGTTCTCTGCTGCTTTATCAGAGAGCATCAT 119
|| |||||||| || ||||||||||||||||||||||||| ||| ||| |||||||||||
Sbjct 50 TGAATCCCAAAACTGTGATTCATTGTTGTTGTTCTCTGCTACTTCATCGGAGAGCATCAT 109
Query 120 CATGTACGGAAGAGATCCATGGGGAGGTCCATTGGAGATAAACACTGCAGATTCCGCCAC 179
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 110 CATGTACGGACGAGATCCATGGGGAGGTCCATTGGAGATCAACACTGCAGATTCCGCCAC 169
Query 180 CGACGATGATCGTAGTCGGAATTTAAACGATTTGGATCGTGCGGCTCTTTCACGTCCACT 239
|||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 170 CGACGATGATCGTAGTCGGAATTTGAACGATTTAGATCGTGCGGCTCTTTCACGGCCACT 229
Query 240 AGATGAGACGCAGCAGAGTTGGTTACTTGGTCCAACGGAGCAGAAGAAGAAGAAGTACGT 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 230 CGATGAGACGCAGCAGAGTTGGTTACTTGGTCCAACGGAGCAGAAGAAGAAGAAGTATGT 289
Query 300 CGATCTCGGTTGTATTATCGTTAGCCGCAAGATCTTCGTCTGGACTGTTGGTACTCTTGT 359
|||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||
Sbjct 290 CGATCTCGGTTGTATTATCGTTAGCCGCCAGATATTTGTCTGGACTGTTGGTACTCTTGT 349
Query 360 TGCCGCCGCGTTACTCGCCGGATTCATTACCTTGATCGTTAAAACTGTGCCGCGTCATCA 419
|||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct 350 TGCCGCCGCGTTACTCGCCGGATTTATCACCTTGATCGTTAAAACTGTGCCGCGACATCA 409
Query 420 TCCTAAGACTCCGCCGCCGGATAATTATACTA-TAGCTCTACACAAAGCTCTTAAGTTCT 478
|||||||| ||||||||||||||||||||| | ||||||| || ||||||||||||||||
Sbjct 410 TCCTAAGAGTCCGCCGCCGGATAATTATAC-ATTAGCTCTTCATAAAGCTCTTAAGTTCT 468
Query 479 TCAATGCTCAGAAATCTGGGAAATTGCCAAAGCATAATAACGTGTCATGGAGAGGTAATT 538
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 469 TCAATGCTCAGAAATCTGGGAAATTGCCAAAGCATAATAACGTATCGTGGAGAGGTAATT 528
Query 539 CTGGGCTTCAAGATGGGAAAGGTGAAACAGGAAGCTTCTATAAAGATTTGGTGGGAGGTT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 CTGGGCTTCAAGATGGGAAAGGTGAAACAGGAAGCTTCTATAAAGATTTGGTGGGAGGTT 588
Query 599 ATTATGATGCTGGTGATGCTATCAAGTTCAATTTCCCCATGGCTTATGCTATGACTATGT 658
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 ATTATGATGCTGGTGATACTATCAAGTTCAATTTCCCCATGGCTTATGCTATGACTATGT 648
Query 659 TGAGCTGGAGTGTTATTGAATATAGTGCTAAATACGAAGCTGCTGGTGAGCTCACTCATG 718
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 649 TGAGCTGGAGTGTTATTGAGTATAGTGCTAAATACGAAGCTGCGGGTGAGCTCACTCATG 708
Query 719 TTAAGGAGCTTATCAAATGGGGAACTGATTACTTTCTCAAGACTTTCAATAGTACTGCTG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 TTAAGGAGCTTATCAAATGGGGAACTGATTACTTTCTCAAGACTTTCAATAGTACTGCTG 768
Query 779 ATTCCATTGATGATCTTGTGTCACAGGTTGGATCAGGGAATACTGATGATGGAAATACAG 838
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 769 ACTCCATTGATGATCTTGTGTCACAGGTTGGATCAGGGAATACTGAGGATGGAAATACAG 828
Query 839 ATCCTAATGACCATTACTGTTGGATGCGACCTGAGGATATGGACTATAAAAGGCCCGTGA 898
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 829 ATCCTAATGACCATTACTGTTGGATGCGGCCTGAGGATATGGACTATAAAAGGCCTGTGA 888
Query 899 CTACTTGTAATGGTGGATGTTCGGATCTCGCTGCAGAGATGGCAGCTGCTCTGGCTTCAG 958
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CTACGTGTAATGGTGGATGTTCGGATCTCGCTGCAGAGATGGCAGCTGCTCTGGCTTCAG 948
Query 959 CATCTATTGTATTCAAGGATAACAAGGAATATTCTAAAAAGCTTGTCCATGGTGCTAAGG 1018
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 949 CGTCTATTGTATTCAAGGATAACAAGGAATATTCTAAAAAGCTTGTTCATGGTGCTAAGA 1008
Query 1019 TGGTGTATCAGTTTGGAAGGACGAGGAGAGGGAGATATAGTGCAGGCACTGCGGAATCTA 1078
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1009 CGGTTTATCAGTTTGGAAGGACTCGGAGAGGGAGATATAGTGCAGGCACTGCGGAATCTA 1068
Query 1079 GCAAGTTCTATAATTCAAGTATGTATTGGGATGAGTTCATTTGGGGTGGTGCTTGGATGT 1138
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1069 GCAAGTTTTATAATTCAAGCATGTATTGGGATGAGTTCATTTGGGGTGGTGCTTGGTTGT 1128
Query 1139 ATTATGCTACCGGAAATGTAACGTATCTCAATCTAATCACCCAACCTACTATGGCCAAGC 1198
| |||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1129 ACTATGCTACAGGAAATGTAACCTATCTCAATCTAATCACCCAACCCACTATGGCCAAGC 1188
Query 1199 ATGCTGGTGCCTTCTGGGGTGGCCCTTACTATGGTGTATTTAGCTGGGACAACAAGCTTG 1258
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1189 ATGCTGGTGCCTTCTGGGGTGGTCCTTACTATGGTGTATTTAGCTGGGACAACAAGCTTG 1248
Query 1259 CTGGTGCTCAGTTGCTGTTGAGCCGGTTGAGGTTGTTTCTGAGTCCTGGATATCCATATG 1318
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 CTGGTGCTCAGCTGCTGTTGAGCCGGTTGAGGTTGTTTCTGAGTCCTGGATATCCATATG 1308
Query 1319 AAGAAATTCTAAGGACCTTCCACAATCAGACCAGCATAGTCATGTGCTCATACTTGCCTA 1378
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1309 AAGAAATTCTAAGGACCTTCCACAATCAGACTAGCATAGTCATGTGCTCATACTTGCCTG 1368
Query 1379 TTTTCAACAAATTTAACAGAACCAATGGAGGTTTAATAGAGTTGAATCATGGAGCTCCAC 1438
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||| || |
Sbjct 1369 TTTTCAACAAATTTAATAGAACCAACGGAGGTTTAATAGAGTTGAATCATGGAGCCCCTC 1428
Query 1439 AGCCGCTGCAATATTCTGTAAATGCAGCTTTCTTAGCGACTCTATACAGTGATTATCTGG 1498
|||| ||||| |||||||| |||||||||||| ||||||| |||||||||||||||||||
Sbjct 1429 AGCCTCTGCAGTATTCTGTGAATGCAGCTTTCCTAGCGACACTATACAGTGATTATCTGG 1488
Query 1499 ATGCTGCTGATACTCCTGGATGGTACTGTGGACCTAATTTCTATTCGACAAGTGTGCTAC 1558
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1489 ATGCTGCTGATACTCCTGGATGGTACTGTGGACCTAATTTCTATTCAACTAGTGTGCTAC 1548
Query 1559 GTGACTTTGCTAGATCCCAGATTGATTATATACTGGGTAAAAACCCTCGGAAAATGAGTT 1618
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1549 GTGACTTTGCTAGATCCCAGATTGATTATGTACTCGGTAAAAACCCTCGGAAAATGAGTT 1608
Query 1619 ATGTCGTTGGTTTTGGCACAAAATACCCAAGACATGTGCATCACAGAGGAGCTTCGATAC 1678
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1609 ATGTCGTTGGTTTTGGCACAAAATACCCAAAACATGTGCATCACAGAGGAGCTTCGATAC 1668
Query 1679 CCAAGAACAAAGTCAAGTATAACTGCAAAGGAGGATGGAAATGGAGAGACAGCAAGAAAC 1738
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1669 CCAAGAACAAAGTCAAATATAACTGCAAAGGAGGATGGAAATGGAGAGACAGCAAGAAAC 1728
Query 1739 CAAACCCAAACACGATTGAAGGAGCCATGGTTGCTGGTCCTGACAAGCGCGACGGGTACC 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1729 CAAACCCAAACACGATTGAAGGAGCCATGGTTGCTGGTCCTGACAAGCGCGACGGGTTCC 1788
Query 1799 GTGATGTCCGTATGAACTACAACTACACTGAACCGACTCTTGCAGGCAATGCTGGTCTAG 1858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1789 GTGATGTCCGTATGAACTACAACTACACTGAACCGACTCTTGCAGGCAATGCTGGTCTAG 1848
Query 1859 TCGCAGCTCTTGTGGCATTATCGGGTGAAGAAGAAGCCACCGGTAAGATAGACAAAAACA 1918
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1849 TCGCAGCTCTCGTGGCATTGTCGGGTGAAGCAGAAGCCACCGGTAAGATAGACAAAAACA 1908
Query 1919 CTATTTTCTCAGCTGTTCCTCCTTTGTTCCCTACTCCACCACCTCCACCAGCACCATGGA 1978
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1909 CTATTTTCTCAGCTGTTCCTCCATTGTTCCCTACTCCACCGCCTCCACCAGCACCATGGA 1968
Query 1979 AACCTTGAGAAAGCTAGACTTGTGTGATTCTGTCGCTGCTGCCaaaaaa-aaTGAATGAG 2037
|||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||
Sbjct 1969 AACCTTGAGAAAGCTAGACTTGTGTGATTCTGTCGCCGCTGCCAGAAAAGAATGAATGAG 2028
Query 2038 GTAAGAAGGATTT-GGGTGTGAGACCAGAAGATTAGAAGCTAAACACAAGTCAGCCATAA 2096
||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2029 GTAAG--G-ATTTTGGGTGTGAGACCAGAAGATTAGAAGCTAAACACAAGTCAGCCATAA 2085
Query 2097 CCAAACTACTAAGGATTTCATTTGGCTTTACTAGATACAAACACGGGGTGGGTTACTTTA 2156
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 2086 CCAA-CTACTAAGGATTTCATTTGGCTTTACTAGATACAAACCCGGGGTGGGTTGCTTTA 2144
Query 2157 CCACAAGCATTGTCTTTCTTTTCtttttttGGGTTGCTGTTTTGTTCTTGTGAGATATCA 2216
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 2145 CCACAAGCATTGTCTTTCTTTTCTTTTTTGGGGTTGCTCTTTTGTTCTTGTGAGATATCA 2204
Query 2217 TATATATCTATGCGTTTTACTCTGTATATGTTTGATACCAAACTTGTATTCTTTGATAAA 2276
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2205 TATATATCTATGCGTTTTACTCTGTATATGTTTGATACCAAACTTGTATTCTTTGAAAAA 2264
Query 2277 CAATTTAATGAACTGTATTAAACTTTTAACTATGTTT-TATTGTGCAAGTGTGAGATCAA 2335
|||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||
Sbjct 2265 CAATTTAATGAACTGTCTTAAACTCTTAACTATGGGGGTATTGTGCAAGTGTGAGATCAA 2324
Query 2336 CCTGGAATAACAACTGTAGTCTA 2358
| |||||||| ||||||||||||
Sbjct 2325 CTTGGAATAAAAACTGTAGTCTA 2347
> Ahg889734 jgi|Araly1|889734|Al_scaffold_0007_1720
Length=1863
Score = 1288 bits (697), Expect = 0.0
Identities = 1531/1920 (80%), Gaps = 111/1920 (6%)
Strand=Plus/Plus
Query 121 ATGTACGGAAGAGATCCATGGGGAGGTCCAT-TGGAGATAAACACTGCAGATTCCGC-CA 178
||||||||| | ||||||||||| ||||| | ||||||| || | || || | | | ||
Sbjct 1 ATGTACGGACGTGATCCATGGGGCGGTCC-TCTGGAGATCAATGCGGCGGACT-CTCTCA 58
Query 179 CCGACGATGATCGTAGTCGGAATTTA-AACGA-TTTGGATCGTGCGGCTCTTTCACGTCC 236
||||||| ||||||||||| || || || || || || |||||| ||| ||| || ||
Sbjct 59 CCGACGACGATCGTAGTCGAAACCTACAA-GACCTT-GACCGTGCGACTCCTTCGCGGCC 116
Query 237 ACTAGATGAGACGCAGCAGAGTTGG-TTACTTGGTCCAACGGAGCAGAAGAAGAAGAAGT 295
||| || || || |||||||||||| || ||||| |||| | || ||||||||||||||
Sbjct 117 ACTCGACGAAACACAGCAGAGTTGGCTT-CTTGGACCAAAAGTGCTGAAGAAGAAGAAGT 175
Query 296 ACGTCGATCTCGGTTGTAT-TATCGTTAGCCGCAAGATC-TTCGTCTGGACTGTTGGTAC 353
||||||||||||| ||||| | | || ||||| |||||| ||| | |||||| |||| |
Sbjct 176 ACGTCGATCTCGGATGTATCT-TAGTCAGCCGTAAGATCTTTC-TTTGGACTCTTGG-AA 232
Query 354 TC-TTGTTGCCGCCGCG-TTACTCGCCGGATTCATTACCTTGATCGTTAAAACTGTGCCG 411
|| |||| | ||||| || ||| | |||||||| || ||||||||||||||| ||||
Sbjct 233 TCATTGTAGTTACCGCGCTT-CTCTCTGGATTCATAACTTTGATCGTTAAAACTTTGCCA 291
Query 412 CGTCATC-ATCCTAAGACTCCGCCGCCGGATAATTATACTATAGCTCTACACAAAGCTCT 470
| || | | || |||| || || | ||||||||| || || ||||| | || ||||||
Sbjct 292 CACCA-CAAACCCAAGAAACCACCACTGGATAATTACACAATCGCTCTCCCCATAGCTCT 350
Query 471 TAAGTTCTTCAATGCTCAGA-AATCTGGGAAA-TTGCCAAAG--C-ATAATAACGTGTCA 525
||||||||||||||||| | ||||||||||| || |||||| | | |||| ||| |
Sbjct 351 CAAGTTCTTCAATGCTCA-ACAATCTGGGAAACTT-CCAAAGAACAACAATAGCGT-AAA 407
Query 526 -TGGAGAGGTAATTCTGGGCTTCAAGATGGGAAAGGTGAAACAGGA-AGCTTCTATAAAG 583
||||| ||| ||||| | || ||||||||||| || || ||||| | | ||| ||||
Sbjct 408 GTGGAGGGGTGATTCTTGTCTACAAGATGGGAAGGGAGATCCAGGACA-ATACTACAAAG 466
Query 584 ATTTGGTGGGAGGTTATTATGATGCTGGTGATGCTATCAAGTTCAATTTCCCCATGGCTT 643
||||||| ||||| || ||||||||||| ||| |||| || ||||| ||||| ||| |||
Sbjct 467 ATTTGGTAGGAGGCTACTATGATGCTGGAGATTCTATTAAATTCAACTTCCCAATGTCTT 526
Query 644 ATGCTATGACTATGTTGAGCTGGAGTGTTATTGAATATAGTGCTAAA-TACGAAGCTGCT 702
|||||||||| ||||||||||||||||| || ||||| || || ||| ||||||||||||
Sbjct 527 ATGCTATGACCATGTTGAGCTGGAGTGTAATCGAATACAGCGC-AAAGTACGAAGCTGCT 585
Query 703 GGTGAGC-TCACTCATGTTAAGGAGCTTATCAAATGGGGAACTGATTACTTTCTCAAGAC 761
|| |||| | || |||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 586 GGCGAGCTTGAC-CATGTTAAAGAACTCATCAAATGGGGAACTGATTACTTTCTCAAGAC 644
Query 762 TTTCAATAGTACTGCTGAT-TCCAT-TGATGATCTTGTGTCACAGGTTGGATCAGGGA-A 818
|||||||||||||||||| | || | |||| | ||| |||||| ||||| |||
Sbjct 645 CTTCAATAGTACTGCTGATAT-AATCT-ATGAAATGGTGGAACAGGTCGGATC-TGGAGT 701
Query 819 TA-CTGAT-GATGGAAATACAGAT-CCTAATGACCATTACTGTTGGATGCGACCTGAGGA 875
|| | | | || |||||| | | | ||||||||||||||| |||||||| ||||||||
Sbjct 702 TAGC-GGTGGA-GGAAATGTA-TTGCATAATGACCATTACTGCTGGATGCGTCCTGAGGA 758
Query 876 TATGGACTATAAAAGGCCCGTGACTA-C-TTG-TAATGGTGGATGTTCGGATCTCGCTGC 932
|| ||||||||||| || | || | || | | || | || ||||||||||||||
Sbjct 759 CATTCACTATAAAAGGATTGT-A-TATCAATGCT-ACAGTAGCTGCTCGGATCTCGCTGC 815
Query 933 AGAGATGGCAGCTGCTCTGGCTTCAGCATCTATTGTATTCAAGGATAACAAGGA--ATAT 990
||||||||||||||||||||||||||| ||||||||||||||||||||| | || ||||
Sbjct 816 AGAGATGGCAGCTGCTCTGGCTTCAGCGTCTATTGTATTCAAGGATAAC-A-GATTATAT 873
Query 991 TCTAAAAAGCTTGTCCATGGTGCTAAGGTGGTGTATCAGTTTGGAA-GGACGAGGAGAGG 1049
|| |||||||||| || ||||||||| | | ||| |||||| || | |||
Sbjct 874 TCGGAAAAGCTTGTTCACGGTGCTAAGACGCTCTATAAGTTTGCAACTTTTAATAAGA-A 932
Query 1050 GAGATATAGTGCAGGCACT-G--CGGAATCTAGCAAGTTCTATAATTCAAGTATGTATTG 1106
||||| ||| | | || | || |||||||| || ||||| || || ||||| ||
Sbjct 933 TAGATACAGT--A-CCCCTGGTAAAGAGTCTAGCAAATTTTATAACTCTAGCATGTA-TG 988
Query 1107 -GGATGAGTTCATT-TGGGGTGGTGCTTGGATGTATTATGCTACCGGAAATGTAACGTAT 1164
||||||| | ||| |||||||| |||||| ||||||||||||| ||||||||||| |||
Sbjct 989 AGGATGAGCT-ATTATGGGGTGGGGCTTGGTTGTATTATGCTACTGGAAATGTAACTTAT 1047
Query 1165 CTCA-ATCTAATCACCCA-AC-CTACTATGGCCAAGCATGCTGGTGCCTTCTGGG-GTGG 1220
|| | | | | | ||| | |||| ||||||||| | |||||||||||| ||| | |
Sbjct 1048 CT-AGAAGGAGTTA-CCAGTCACTAC-ATGGCCAAGAAAGCTGGTGCCTTC-GGGAATAG 1103
Query 1221 CCCTTACTATGGTGTATTTAGCTGGGACAACAAGCTTGCTGGTGCTCAGTTGCTGTTGAG 1280
|||||| ||||| || ||||||||||||||||||||| | || ||||||||| |||| |
Sbjct 1104 CCCTTATTATGGCGTGTTTAGCTGGGACAACAAGCTTCCAGGGGCTCAGTTGTTGTTAAC 1163
Query 1281 CCGGTTGAGGTTGTTTCTGAGTCCTGGATATCCATATGAAGAAATTCTAAG-GACCTTCC 1339
|||| ||||| |||||||||||||||||||||||||||||||||||||||| | | || |
Sbjct 1164 CCGGATGAGGCTGTTTCTGAGTCCTGGATATCCATATGAAGAAATTCTAAGCG-CATTTC 1222
Query 1340 ACAATCAGACCAG-CATAGTCATGTGCTCATACTTGCCT-ATTTTCAACAAATTTAACAG 1397
| || || || || || ||| |||||||| ||||||||| ||| ||| |||||||||||
Sbjct 1223 ATAACCAAAC-AGGCAGAGTTATGTGCTCTTACTTGCCTTATTA-CAAAAAATTTAACAG 1280
Query 1398 AACCAATGGAGGTTTAATAGAGTTGAATCATGGAGCTCCACAGCCGCTGCAATATTCTGT 1457
||||| ||||||||| || ||||||| ||||||||||||||||| || |||||| ||
Sbjct 1281 AACCAGTGGAGGTTTGATTCAGTTGAACCATGGAGCTCCACAGCCTCTCCAATATG-TGG 1339
Query 1458 -AAATGCAGCTTTCTTAGCGACTCTATACAGTGATTATCTGGATGCTGCTGATACTCCTG 1516
|||||| |||||||||||| | |||| |||||||||||| |||||||||||||||||||
Sbjct 1340 CAAATGCGGCTTTCTTAGCGGCGCTATTCAGTGATTATCTAGATGCTGCTGATACTCCTG 1399
Query 1517 GATGGTACTGTGGACCTAATTTCTATTCGAC--AAGTGTGCTACGTGACTTTGCTAGATC 1574
||||||||||||| ||||| |||||| | || || | | ||||| |||||| | |||||
Sbjct 1400 GATGGTACTGTGGTCCTAACTTCTATACTACTGAA-T-TACTACGCGACTTTTCAAGATC 1457
Query 1575 CCAGATTGATTATATACTGGGTAAAAACCCTCGGAAAATGAGTTATGTCGTTGGTTTTGG 1634
|||||||||||| ||||| ||||||||||||||||| ||||||||||| || |||| |||
Sbjct 1458 CCAGATTGATTACATACTTGGTAAAAACCCTCGGAAGATGAGTTATGTTGTGGGTTATGG 1517
Query 1635 CACAAAA-TACCC-AAGACATGTGCATCACAGAGGAGCTTCGATACCCAAGAACAA-AGT 1691
||| ||||| || ||| |||||||||||||||||||| || || |||||||| ||
Sbjct 1518 G-CAACGGTACCCGAA-ACAAGTGCATCACAGAGGAGCTTCAATTCCAAAGAACAAGAG- 1574
Query 1692 CAAGTATAAC-TGCAAAGGAGGATGGAAATGGAGAGACAGCAAGAAACCAAACCCAAACA 1750
| | | ||| |||| |||||||| |||||||| | | ||||| ||| ||||||||||
Sbjct 1575 -A-G-A-AACCTGCACAGGAGGATTGAAATGGAAAAAGAGCAAAAAAGGTAACCCAAACA 1630
Query 1751 CGATTGAAGGAGCCATGGTTGCTGGTCCTGACAAGCGCGACGGGTACCGTGATGTCCGTA 1810
||||||| ||||| ||||||||||| || ||||||| ||||| | || |||||| |||
Sbjct 1631 CGATTGATGGAGCAATGGTTGCTGGACCAGACAAGCATGACGGATTCCATGATGTTCGT- 1689
Query 1811 TGAA-CTACAACTACACTGAACCGACTCTTGCAGGCAATGCTGGTCTAGTCGCAGCTCTT 1869
| || |||||||||||| || |||||||| || || ||||| ||||||||||| |||||
Sbjct 1690 TCAAACTACAACTACACAGAGCCGACTCTAGCGGGTAATGCGGGTCTAGTCGCCGCTCTG 1749
Query 1870 GTGGCATTATCGGGTGAAGAAGAAGCCACCGGTAAG-ATAGACAAAAACACTATTTTCTC 1928
||||| ||||| || || ||| | || ||| | || |||||||||||||| |||||
Sbjct 1750 GTGGCTTTATCAGGAGA-GAA-A-GCTGTTGGTG-GTATTGACAAAAACACTATGTTCTC 1805
Query 1929 AGCTGTTCCTCCTTTGTTCCC-TA-CTCCACCACCTCCACCAGCACCATGGAAACCTTGA 1986
|| || ||||| ||| ||| | || |||| || || |||||||| |||| |||||||
Sbjct 1806 TGCCGTACCTCCATTG--CCCATGGCTACACCGCCGCCTCCAGCACCTTGGACACCTTGA 1863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88902631830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5