BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49800.1
Length=907
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495039 jgi|Araly1|495039|fgenesh2_kg.8__855__AT5G49800.1 1266 0.0
> Ahg495039 jgi|Araly1|495039|fgenesh2_kg.8__855__AT5G49800.1
Length=888
Score = 1266 bits (685), Expect = 0.0
Identities = 828/894 (93%), Gaps = 21/894 (2%)
Strand=Plus/Plus
Query 1 ACATCATAAGTCTTCATACCTTCGGATTCTTCAATCTCTTCTACACATCATGAACGGTCC 60
||| ||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||
Sbjct 1 ACAGCATAAGTCTTCATACCTTCGGATTCCTCAATCTCCTCTCCACATCATGAACGGTCT 60
Query 61 AGTCCCCTCCAGCCGCTCCTGGTCGGTGAGCGAGGAGTCGCTGAGAAGGTACGTGAGGTT 120
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 AGTCCCCTCCAGCAGCTCCTGGTCGGTGAGTGAGGAGTCGCTGAGAAGGTACGTGAGGTT 120
Query 121 CGCGAGTGAGAGCTGCATCCAAGAGCTCTTATCTTCCTCTGAGGCCGGACGCTTTGGGAA 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGCGAGTGAGAGCTGCATCCAAGAGCTCTTATCTTCCTCTGAGGCCGGACGCTTTGGGAA 180
Query 181 CGCTTCCAATGGGTGGAAGATGGTGAGGCATGACTCGAACGGTGTCGAGATTTCAAAACG 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGCGTCCAATGGGTGGAAGATGGTGAGGCATGACTCGAACGGTGTCGAGATTTCAAAACG 240
Query 241 CGACTCGGGATCGCTACACGCGTTTCGAAGCCGCAGGATCCTCACATCAGTCTCCCCAGA 300
||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 241 CGACTCGGGATCGCTGCACGCGTTTCGAAGCCGTAGGATCCTCACATCAGTCTCTCCAGA 300
Query 301 GCAGTTCATCACGGTTGCAAATGCGATAGACGCGGCCAAGCAATGGGAAGGCGACCTGGT 360
|||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 301 GCAGTTCATCACAGTCGCAAACGCCATAGACGCGGCCAAGCAATGGGAAGGCGACCTGGT 360
Query 361 GGAGGCAACACACATTAGAGACATAGATGAAAATCTGAGCGTAATCCGTTTAAGGTTTGG 420
||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 361 GGAAGCAACACATATTAGAGACATAGATGAGAATCTGAGCGTAATCCGTTTAAGGTTTGG 420
Query 421 CGAAAACTCGAAACCGCTCTTTAGGAACAGAGAGTTCATTATCTACGAAAGACGTGAGAC 480
||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||
Sbjct 421 CGAAAACTCGAAACCGCTCTTCAGGAAAAGAGAGTTCATTGTCTACGAAAGACGTGAGAC 480
Query 481 CATGCAAGACGGTACTCTCGTGGTGGCGGTTGCGTCGCTACCAAAGGAGATGGCAGAAGG 540
|||||||||||| |||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 481 CATGCAAGACGGCACTCTCGTGGTGGCGGTTGCTTCACTACCGAAGGAGATGGCAGAAGG 540
Query 541 ATTGGAGCCAACAGAGAAAAAGAAAAACAATT--AT-ATTAGAGGGTTTTTGGTTGAGTC 597
||||||||||||| |||||||||||||||||| || |||||||| || |||||||||||
Sbjct 541 ATTGGAGCCAACAAAGAAAAAGAAAAACAATTCCATTATTAGAGGATTGTTGGTTGAGTC 600
Query 598 GGGTTGGGTTTTGGAGAAGCTTGAAGATACCTCTTGCATGATTACTTATGTTGTTCAGTT 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGGTTGGGTTTTGGAGAAGCTTGAAGATACCTCTTGCATGATTACTTATGTTGTTCAGTT 660
Query 658 GGATCCTGCAGGATGGTTGCCAAAGTGTTTTGTGAACAGACTAAACACAAAGTTAGTAAT 717
|||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 661 GGATCCCGCAGGATGGTTACCAAAGTGTTTTGTGAACAGACTAAACACAAAGCTAGTAAT 720
Query 718 GATAATTGATAACCTTAGAAAGGTTGCTCAAGCTTATCTACcctcttttcctcctcctt- 776
|||||||||||||||||||||| |||||||||||| |||||||||| |||||||| |||
Sbjct 721 GATAATTGATAACCTTAGAAAGCTTGCTCAAGCTTCTCTACCCTCTCTTCCTCCTACTTG 780
Query 777 a---gctctctctttctttgtctccttctttttgtttgtaaaca--ta----tttttccA 827
| | ||||||||||||| | | || ||| ||||||||||| || ||||| ||
Sbjct 781 ATTAGGTCTCTCTTTCTTT-T-T--TTGTTT--GTTTGTAAACAACTAAACATTTTTACA 834
Query 828 AAA-GAGTGAAGTGATCGTAATTAAGAGGC-AATTACTCCTCCCTCTTTTCTAC 879
||| |||| || |||||||||||||||||| || |||||||||||||| ||||
Sbjct 835 AAAAGAGTTAAATGATCGTAATTAAGAGGCCAACAACTCCTCCCTCTTTCCTAC 888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33624412794
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5