BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49820.1
Length=1860
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495041 jgi|Araly1|495041|fgenesh2_kg.8__857__AT5G49820.1 2916 0.0
> Ahg495041 jgi|Araly1|495041|fgenesh2_kg.8__857__AT5G49820.1
Length=1849
Score = 2916 bits (1579), Expect = 0.0
Identities = 1767/1856 (95%), Gaps = 19/1856 (1%)
Strand=Plus/Plus
Query 15 CTTCTTCTTCTACAGAGCTTCCCTCGTTTCCTCCGCCGGAGAGACACTCCATTAAAATCC 74
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1 CTTCTTCTTCTTCAGAGCTTCCCTCGTTTCCTCCGCCGGAGAG--ACTCCATTAAAAT-C 57
Query 75 CTTCTTCATCGATCCTTCAT-TAGATTTACAACAACAACAATGCCAAGCGTCAAGCTCAC 133
||||||| |||||||||| | ||||| |||||||||||||||||||||||||||||||
Sbjct 58 CTTCTTCTTCGATCCTTC-TCAAGATTCACAACAACAACAATGCCAAGCGTCAAGCTCAA 116
Query 134 ACACCATTCTCCACCTGACA-C---T-AT--T--GCCTCCGACTCCGTCCGTCTCCTTTC 184
||| |||||||||||||||| | | | | |||||||||||||||| ||||||||
Sbjct 117 ACATCATTCTCCACCTGACACCATTTCCTCCTCCTCCTCCGACTCCGTCCGCCTCCTTTC 176
Query 185 CCGTGAAActctccgaatcagcgcctctctcgcttctcctcccgttgatgatctccctcc 244
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 CCGTGAAACTCTCCGCATCAGCGCCTCTCTCGCTTCTCCTCCCGTTGATGATCTCCCTCC 236
Query 245 tcactctcctccacctccagattctcAATTTCTTCATTCGACTCTGAGATTGATCTGTTG 304
|||||| |||||| | || ||||| |||||||||||||| ||||| ||||||||||| ||
Sbjct 237 TCACTCACCTCCATCACCTGATTCCCAATTTCTTCATTCAACTCTCAGATTGATCTGCTG 296
Query 305 CGAAGAAATCGATGGCCGTCGGTTTAAGTATGTCGCTGAGAGCGATGGTTCTGGGAGATT 364
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 297 CGAAGAAATCGATGGCCGTCGATTTAAGTATGTCGCTGAGAGCGATGGTTCTGGGAGATT 356
Query 365 CAAGAAGAATTCAGTTCGTGCTATTAGCTTGGAGTCTCCTCAGACTCCTTTTGATGAAGT 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CAAGAAGAATTCAGTTCGTGCTATTAGCTTGGAGTCTCCTCAGACTCCTTTTGATGAAGT 416
Query 425 GGGTTCGTTTCTTAGATCTTACGTTGTACCTGAAGGCTTTCCTGGGAGTGTTAATGAGTC 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GGGTTCGTTTCTTAGATCTTACGTTGTACCTGAAGGCTTTCCTGGGAGTGTTAATGAGTC 476
Query 485 TTATGTTCCTTATATGACTTGGAGAGCTTTGAAACATTTCTTTGGTGGAGCTATGGGTGT 544
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TTATGTTCCGTATATGACTTGGAGAGCTTTGAAACATTTCTTTGGTGGAGCTATGGGTGT 536
Query 545 GTTTACTACTCAAACTCTTCTTAATTCTGTTGGAGCTTCAAGAAACAGTTCTGCTTCTGC 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GTTTACTACTCAAACTCTTCTTAATTCTGTTGGAGCTTCAAGAAACAGTTCTGCTTCTGC 596
Query 605 TGCTGTTGCCATCAATTGGATTCTCAAGGATGGTGCTGGGCGTGTTGGGAAAATGCTTTT 664
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 597 TGCTGTTGCCATCAATTGGATTCTCAAGGATGGTGCTGGGCGTGTTGGAAAAATGCTTTT 656
Query 665 TGCGAGGCAGGGAAAGAAATTTGATTATGATTTGAAACAGTTACGGTTTGCTGGTGATCT 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TGCGAGGCAGGGAAAGAAATTTGATTATGATTTGAAACAGTTACGGTTTGCTGGTGATCT 716
Query 725 ATTGATGGAGCTCGGTGCTGGTGTAGAGTTGGCGACGGCTGCAGTTCCACATCTTTTTCT 784
|| |||||||| |||||||||||||| || ||||| |||||||||||||| ||||||||
Sbjct 717 TTTAATGGAGCTGGGTGCTGGTGTAGAATTAGCGACTGCTGCAGTTCCACACCTTTTTCT 776
Query 785 TCCACTGGCTTGTGCTGCTAATGTTGTTAAGAATGTTGCAGCAGTAACATCAACGTCTAC 844
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 777 TCCACTAGCTTGTGCTGCTAATGTTGTTAAGAATGTTGCAGCTGTAACATCAACGTCTAC 836
Query 845 TCGTACACCGATCTATAAAGCCTTTGCTAAAGGAGAAAACATAGGAGACGTAACTGCTAA 904
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 837 TCGTACACCGATCTATAAAGCCTTTGCTAAAGGAGAAAACATAGGAGATGTCACTGCTAA 896
Query 905 AGGAGAGTGTGTTGGTAATATTGCAGATCTGATGGGAACTGGGTTTAGCATCCTGATATC 964
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GGGAGAGTGTGTTGGTAATATTGCAGATCTGATGGGAACTGGGTTTAGCATCCTGATATC 956
Query 965 AAAAAGAAATCCTTCGTTGGTCACAACATTTGGTCTTCTATCATGTGGCTATCTCATGAG 1024
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 CAAAAGAAATCCTTCCTTGGTCACAACATTTGGTCTTCTATCATGTGGCTATCTCATGAG 1016
Query 1025 CTCGTACCAAGAGGTTAGATCTGTAGTATTGCATACACTAAACCGTGCTAGATTTACAGT 1084
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 1017 CTCGTACCAAGAGGTTAGATCTGTAGTACTGCATACACTAAACCGTGCGAGATTTACAGT 1076
Query 1085 AGCAGTGGAGTCCTTTCTTAAGACGGGGCGGGTTCCCTCATTGCAGGAAGGTAATATCCA 1144
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1077 AGCAGTGGAGTCCTTTCTTAAGACGGGGCGGGTTCCCTCACTGCAGGAAGGTAATATCCA 1136
Query 1145 AGAAAAGATATTCACTTTTCCATGGGTGGATGATCGGCCAGTGATGCTTGGAGCCAGATT 1204
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1137 AGAAAAGATATTCACTTTTCCGTGGGTGGATGATCGGCCAGTGATGCTTGGAGCCAGATT 1196
Query 1205 TAAGGATGCATTCCAAGACCCCAGCACGTATATGGCTGTAAAGCCTTTTTTCGATAAAGA 1264
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1197 TAAGGATGCATTCCAAGACCCCAGCACATATATGGCTGTAAAGCCTTTTTTCGATAAAGA 1256
Query 1265 AAGATACATGGTAACGTACAGCCCTACCAAGGGTAAAGTCTATGCACTGCTCAAACATCA 1324
|||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1257 AAGATACATGGTGACATACAGCCCTACCAAGGGTAAAGTCTATGCACTGCTCAAGCATCA 1316
Query 1325 GGCTAACTCAGATGACATTCTCAAAGCAGCATTTCATGCACATGTGCTTCTTCATTTCAT 1384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1317 GGCTAACTCAGATGACATTCTCAAAGCAGCATTTCATGCACATGTGCTTCTTCATTTTAT 1376
Query 1385 GAATCAATCAAAAGATGGTAACCCAAGATCGGTGGAGCAATTAGATCCTGCGTTTGCTCC 1444
|||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||
Sbjct 1377 GAATCAATCAAAAGATGGTACCCCAAGATTGGTGGAGCAATTAGATCCTGCTTTTGCTCC 1436
Query 1445 TACGGAATATGAGCTCGAGTCTCGTATTGCTGAGTCGTGTGAAATGGTTTCCACATCATA 1504
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 TACGGAATATGAACTCGAGTCTCGTATTGCTGAGTCGTGTGAAATGGTTTCCACATCATA 1496
Query 1505 TGGCGTCTTCAAAAGCAGGGCTGCAGAACAGGGTTGGAGAATGTCAGAATCTCTGCTTAA 1564
|| | |||| || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1497 TGCCATCTTTAAGAGCAGGGCTGCAGAACAGGGTTGGAGAATGTCAGAATCTCTTCTTAA 1556
Query 1565 TCCTGGCCGGGCTAGGTTATGTCATGTGAAGGAGGGGGA-GTAAACATCGCCTGTTGAGA 1623
||||||||||||||||||||||||| ||||||||| | | | | ||||||| || ||||
Sbjct 1557 TCCTGGCCGGGCTAGGTTATGTCATATGAAGGAGGAGTAAGCATACATCGCTTGGTGAGG 1616
Query 1624 CTGGTCATCGACCTGAATC-GGCTTTTATAGTTATTTCACTGTCACACTCTAAATTTTGC 1682
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1617 CTGGTCATCGACCTGAATCCGGCTTTTATAGTTATTTCACTGTCAC--TCTAAATTTTGC 1674
Query 1683 TGTCTTGGTTTCATGAAGaaaaaaaCAGGTTTTGGTTGGTACACGTTTTATTAACCAGGC 1742
||| ||||||||||| |||||||| |||||||||||||||||||||| ||||||||| ||
Sbjct 1675 TGTTTTGGTTTCATGTAGAAAAAA-CAGGTTTTGGTTGGTACACGTTATATTAACCATGC 1733
Query 1743 TGTAAAAAATAGAACGATATGTAGCTTTTGTAAATTGTGAGAATGCCACTGGTGTAATTT 1802
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1734 TGTAAAAAATAGAATGATATGTAGCTTTTGTAAATTGTGAGAATGCCACTGGTGTAATTT 1793
Query 1803 AACAGATGAATCTTCTTTGTGTACCAATTCTCACATCATGATTGTTACACAGGTTC 1858
|||||| ||||||||||||| ||||| |||||||||||| ||||||||||||||||
Sbjct 1794 AACAGACGAATCTTCTTTGTTTACCACTTCTCACATCATAATTGTTACACAGGTTC 1849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69857509330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5