BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49840.1
Length=2144
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495043 jgi|Araly1|495043|fgenesh2_kg.8__859__AT5G49840.1 2955 0.0
Ahg915880 jgi|Araly1|915880|Al_scaffold_0008_631 233 3e-60
> Ahg495043 jgi|Araly1|495043|fgenesh2_kg.8__859__AT5G49840.1
Length=1818
Score = 2955 bits (1600), Expect = 0.0
Identities = 1755/1829 (96%), Gaps = 13/1829 (1%)
Strand=Plus/Plus
Query 53 ATGTTTTGTAGCTTATCCATTTCCAGATTTGTCTCGAGGAAGACAATAACATCATCATCT 112
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGTTTTGTAGCTTATCCATTTCCAGATTTGTCTCGAGGAAGACAATAACATCATCGTCT 60
Query 113 CTTCTCTCTCGCAGTTTCAGATTCCTTCTCTCCGTTGATTCTCCTCCTCACATCCCTCTT 172
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 CTTCTCTCTCGCAATTTCAGATTCCTTCTCTCCGTTGATTCTCCTCCTCACACCCCTCTT 120
Query 173 CTACGCCCTTCTTCCAACACCCTAATCCCTTCCTCTTCCTTCTCCCGCCGTATTTGGGAC 232
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 121 CTACGCCCTTCTTCCAACACCCTAATCCCTTCCTCCTCCTTCTCTCGCCGTATTTGGGAC 180
Query 233 TCCTGCAGCGGCGGCGGCGGAGGTGGCGGCGGAGATGATTATGATCACATCAGAAGTGAC 292
|||||||||||||| ||| |||||||||||||| |||||||| |||||||||||||||
Sbjct 181 TCCTGCAGCGGCGGTGGC---GGTGGCGGCGGAGACGATTATGACCACATCAGAAGTGAC 237
Query 293 GTCAATTGTCCTCGTTGCTCTGCTCAGATGCACGTCATCTTCTCAAATCGTCCATTGTCT 352
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 238 GTCAATTGCCCTCGTTGCTCAGCTCAGATGCACGTCATCTTCTCAAATCGTCCATTGTCT 297
Query 353 CTAACAGCAAGAGAACCAGGGATCTATCAAGCTGTTAATTTCTGTTCTCAATGCAAAACA 412
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CTCACAGCAAGAGAGCCAGGGATCTATCAAGCTGTTAATTTCTGTTCTCAATGCAAAACA 357
Query 413 GCTTTTTACTTTAGACCATTCAAGCTCTCTCCTTTACAAGGGAGTTTTATTGAACTCGGG 472
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 358 GCTTTTTACTTTAGACCATTCAAGCTCTCTCCTTTACAAGGGAGTTTTATTGAACTAGGG 417
Query 473 AAAGTTAAAGGAACtgatgatgaccatgatgatgatgatgatgatCAGAAATCTTTCCCT 532
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 AAGGTTAAAGGAACTGATGATGACCATGATGATGATGATGATGATCAGAAATCTTTCCCT 477
Query 533 AGGAATTGGAAAATTCAAGGTCTTAGAAGCGATGAAGATGGTGAGGATGCTGATGAGGAG 592
||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 478 AGGAATTGGAAAATTCAGGGTCTTAGAAACGATGAAGATGGTGAGGATGCTGATGAGGAT 537
Query 593 GAGGATGAAAGTAATGGTGGTGATAAAGAGAAGCAATCTGTGATTAAGCTTCCAACTCCT 652
|||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 538 GAGGATGAAACTAATGGTGGTGATAAAGAGAAGCAATCTGTGATTAAGCTTCCCACACCT 597
Query 653 AAGGAAATTTGTCAAGGGCTTGATGAGTTTGTCATTGGTCAAGAGAAGGCTAAGAAGGTT 712
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 598 AAGGAAATTTGTCAAGGGCTTGATGAGTTTGTCATTGGTCAAGAAAAGGCTAAGAAGGTG 657
Query 713 CTTTCTGTGGCTGTTTATAATCATTACAAAAGAATATATCATGCTTCTAGGAAAAAAGGG 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CTTTCTGTGGCTGTTTATAATCATTACAAAAGAATATATCATGCTTCTAGGAAAAAAGGG 717
Query 773 TCTGCTT-CAGAATCAT-ATAACATTGATATGGAGGATGATAATATTGATCACGTGGAGT 830
| || || ||| || | |||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 718 TTTGTTTCCAG-GTC-TGATAACATTGATATGGAAGATGATAATATCGATCATGTGGAGT 775
Query 831 TGGATAAGAGTAATGTGTTGTTGCTTGGTCCTACTGGTTCAGGAAAGACTTTACTGGCAA 890
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 776 TGGATAAGAGCAATGTGTTGTTGCTTGGCCCTACTGGTTCAGGAAAGACTTTACTGGCAA 835
Query 891 AAACTTTGGCGCGTATTGTCAATGTGCCATTCGCTATTGCTGATGCGACTTCACTAACTC 950
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 836 AAACTTTAGCGCGTATTGTCAATGTGCCATTCGCCATTGCTGATGCGACTTCACTAACTC 895
Query 951 AGGCAAGTTATGTTGGTGAAGATGTGGAATCAATATTGTACAAACTATATGTGGAAGCTG 1010
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 AGGCAGGTTATGTTGGTGAAGATGTGGAATCAATATTGTACAAACTATATGTGGAAGCTG 955
Query 1011 GGTGCAATGTAGAAGAAGCTCAAAGGGGAATTGTGTACATTGATGAAGTTGATAAAATGA 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 956 GGTGCAATGTAGAAGAAGCTCAAAGGGGAATTGTGTACATTGATGAAGTTGATAAGATGA 1015
Query 1071 CTATGAAGTCTCATAGCTCAAATGGTGGTAGAGATGTCTCTGGAGAAGGTGTTCAACAGT 1130
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1016 CTATGAAGTCTCATAGCTCAAATGGTGGTAGAGATGTCTCTGGAGAAGGTGTCCAACAGT 1075
Query 1131 CATTGCTAAAATTGCTGGAAGGAACTGTGGTCAGTGTCCCGATTCCCGAGAAAGGATTAC 1190
||||||||||||||||||||||||| | || |||||||||||| || ||||||||||
Sbjct 1076 CATTGCTAAAATTGCTGGAAGGAAC--T-GT---TGTCCCGATTCCTGAAAAAGGATTAC 1129
Query 1191 GGAGAGATCCTCGAGGAGATAGCATTCAGATGGATACAAAAGACATCCTTTTTATTTGTG 1250
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1130 GGAGAGATCCTCGAGGAGATAGCATTCAGATGGATACGAAAGACATCCTTTTTATTTGTG 1189
Query 1251 GTGGTGCATTTATCGATCTGGAGAAAACTGTTTCTGAAAGGCAGCATGATGCCTCTATTG 1310
|||| ||||||||||||||||||||||||||||| |||||||| || || ||||||||||
Sbjct 1190 GTGGAGCATTTATCGATCTGGAGAAAACTGTTTCCGAAAGGCAACACGACGCCTCTATTG 1249
Query 1311 GTTTTGGTGCTTCCGTTCGTACAAACATGAGTACTTCTGGGTTAAGTAGTGCTGCTGTAA 1370
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1250 GTTTTGGTGCTTCCGTTCGTACAAACATGAGTACTTCTGGGTTCAGTAGTGCTGCAGTAA 1309
Query 1371 CATCCTCCTTGTTGGAATCTTTACAAAGTGAAGATCTTGTTGCGTATGGTCTCATTCCTG 1430
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1310 CATCCTCCTTGTTGGAATCTTTACAAAGTGAAGATCTTGTTGCTTATGGTCTCATTCCTG 1369
Query 1431 AGTTTGTTGGAAGGTTACCCATCTTAGTGAGCTTATCCGCATTAAACGAAGATCAACTTG 1490
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1370 AGTTCGTTGGAAGGTTACCCATCTTAGTGAGCTTATCAGCATTAAACGAAGATCAGCTTG 1429
Query 1491 TACAGGTTCTCACAGAGCCTAAAAGTGCATTGGGTAAACAGTACAAGAAATTGTTTCGCA 1550
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1430 TACAGGTTCTCACAGAGCCTAAGAGTGCATTGGGTAAACAGTACAAGAAATTGTTTCGCA 1489
Query 1551 TGAACAATGTCCAACTGCAATTTACTGAAGGAGCAACGAGGCTAATCGCAAGGAAAGCTA 1610
||||||||||||||||||| |||||||||||||||||||||||||| || ||||| ||||
Sbjct 1490 TGAACAATGTCCAACTGCATTTTACTGAAGGAGCAACGAGGCTAATTGCGAGGAAGGCTA 1549
Query 1611 TGTCGAAGAACACTGGTGCACGTGGCTTACGGTCTATACTGGAAAGTATTCTCACCGAAG 1670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 TGTCGAAGAACACTGGTGCACGTGGCTTACGGTCTATACTGGAAAGTATTCTCACCGAAG 1609
Query 1671 CAATGTTTGAGGTACCAGATAGCATCACGGAAGGATCACAGAGTATAAAGGCAGTTCTGG 1730
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1610 CAATGTTTGAGGTACCAGATAGCATCACGGAAGGATCACAGAGTATTAAGGCAGTTCTGG 1669
Query 1731 TGGATGAAGAGGCTGTTGGTTCAGTTGGGTCCCCAGGATGTGGCGCAAAAATTCTTAAAG 1790
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1670 TGGATGAGGAGGCTGTTGGTTCAGTTGGAACCCCAGGATGTGGCGCAAAAATTCTTAAAG 1729
Query 1791 GAGATAATGTGTTGCAACAATTTGTTGAAGAAGCAGAGTCAAAGGAGAAGAGTAAGGAGG 1850
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1730 GAGATAATGTGTTGCAACAATTTGTTGAAGAAACAGAGTCAAAGGAGAAGAGAAAGGAGG 1789
Query 1851 ATGAAGCTAAGAGAGCTCAGAGTATGTAG 1879
|||| ||||||||||||||||||||||||
Sbjct 1790 ATGACGCTAAGAGAGCTCAGAGTATGTAG 1818
> Ahg915880 jgi|Araly1|915880|Al_scaffold_0008_631
Length=264
Score = 233 bits (126), Expect = 3e-60
Identities = 132/135 (98%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 1022 GAAGAAGCTCAAAGGGGAATTGTGTACATTGATGAAGTTGATAAAATGACTATGAAGTCT 1081
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 79 GAAGAAGCTCAAAGGGGAATTGTGTACATTGATGAAGTTGATAAGATGACTATGAAGTCT 138
Query 1082 CATAGCTCAAATGGTGGTAGAGATGTCTCTGGAGAAGGTGTTCAACAGTCATTGCTAAAA 1141
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 139 CATAGCTCAAATGGTGGTAGAGATGTCTCTGGAGAAGGTGTCCAACAGTCATTGATAAAA 198
Query 1142 TTGCTGGAAGGAACT 1156
|||||||||||||||
Sbjct 199 TTGCTGGAAGGAACT 213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80675138910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5