BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49880.1
Length=2630
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495044 jgi|Araly1|495044|fgenesh2_kg.8__860__AT5G49880.1 3777 0.0
> Ahg495044 jgi|Araly1|495044|fgenesh2_kg.8__860__AT5G49880.1
Length=2457
Score = 3777 bits (2045), Expect = 0.0
Identities = 2260/2364 (96%), Gaps = 14/2364 (1%)
Strand=Plus/Plus
Query 46 aaaaaaaaGTGGCGCCTCTGCAATTTCAATTTTCAAATCCTAATAATTTTTCTCTCGCTT 105
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 23 AAAAAAAAGTGGCGCCTCTGCAATTTCAATTTTCAAATCC---TAATTTTTCTCTCGCTT 79
Query 106 CCCGGAGAACGGAACCCTAATTTCTCGACGCAG-ACATGATTTTGAGAACTCCGCAGCCG 164
||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||
Sbjct 80 CCCGGAGAACGGAACCCTAATTTCTCGACGC-GAACATGATTTTGAGAACTCCGCCGCCG 138
Query 165 AAGAGGCTCAGGTCCGACGCCGGAGAAAGCCCCTTCCCCACCGGCGCTACTGGTTCCGGC 224
|||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||
Sbjct 139 AAGAGGCTCAGGTCCGACGCCGGAGATAGCCCCGTGCCCACCGGCGCTACTGGTTCCGGC 198
Query 225 AATCAGCTAATCATCTACGAAGATTCTCCTCTTCCTGCTCCTGCTCCGCTACAAACTTCT 284
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 199 AATCAGCTAATCATCTACGAAGATTCTCCTCTTCCTGCTTCTGCTCCGCTACAAACTTCT 258
Query 285 CATGATCATTCGGCGGATCAACATCTTTGCACCTATCAATGCCGCCAAATGGTTAAAGCT 344
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 259 CATAATCATTCGGCGGATCAACACCTTTGCACCTATCAATGCCGCCAAATGGTTAAAGCT 318
Query 345 GATGTTCTAGATGCCTTGAGCACAGCAGAGAAACAAGTTGAGGAATCTAAAACCAAATTA 404
|||||||||||||| || |||| ||||||||||||||||||||||| | ||||||||||
Sbjct 319 GATGTTCTAGATGCTTTAAGCAAAGCAGAGAAACAAGTTGAGGAATATCAAACCAAATTG 378
Query 405 CAGACTCTTAATGCCAACTTCACCGAAGCAGATGCTGAAAGAAAGCATTTTCGAGATAAA 464
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 379 CAGACTCTTAATGCCAACTTCACCGAAGCAGATGCTGAGAGAAAGCATTTTCGAGATAAA 438
Query 465 TTCTTATACTCAGAGCAAGAGCTTGCTGCTGCTAAAGCGCGTGAGAAAATGCTTCAGGAG 524
|||||||||||||||||||| || |||||||| |||| ||||||||| ||||||||||||
Sbjct 439 TTCTTATACTCAGAGCAAGAACTGGCTGCTGCCAAAGGGCGTGAGAAGATGCTTCAGGAG 498
Query 525 CAGCTTCTT-ATGGAGATCAACAATTCTCAAGAGCGGTATACCAAAGAACTACAATCTTG 583
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 CAGC-TCTTAATGGAGATCAACAATTCTCAAGAGCGGTATACCAAAGAACTACAATCTTG 557
Query 584 CCATGAACTGGAGGTAAAACTTCAAAATGAAATGAACCTTCGAAAGAAAGCGGAGTCTTC 643
||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||
Sbjct 558 CCATGAACTGGAGGTAAAATTTCAGAATGAAATGAACCTTCGAAAGAAAGCCGAGTCTTC 617
Query 644 TGCTGCAACAGCTGAGGAAAAAGCTAAACTTTTGGAGGATAAACTAACTCAGCTATCTGG 703
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 618 TGCTGCAACAGCTGAAGAAAAAGCTAAACTTTTGGAGGATAAACTAACTCAGTTATCTGG 677
Query 704 AAGTGTGGACAGGGAGAAGAAACGTCTCAACAATGATATTGCTCAACTGGGTAAAGAAGC 763
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 678 AAGTGTGGACAGGGAGAAGAAACGTCTCAACAATGATATTGCTCAATTGGGTAAAGAGGC 737
Query 764 AAAGCTTTCTGTGGCTAGGATTGGTGCAGATCTTGAAAGGATGCAATGTAGGGCACAAAA 823
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 738 AAAGCTTTCTGTATCTAGGATTGGTGCAGATCTTGAAAGGATGCAATGTAGGGCACACAA 797
Query 824 TGCTGAGACGGAATCAAATCTTTTAAGATCACAACTGGAGCATCTTAAACTGATATTTGA 883
||||||||| ||||||||||||||||||||||| || |||||||||||||||| ||||||
Sbjct 798 TGCTGAGACAGAATCAAATCTTTTAAGATCACAGCTTGAGCATCTTAAACTGAAATTTGA 857
Query 884 CGAGTGTTTGCAAGAAAAGACTGAAGTAGACAAGAAGCTATCGTCATTCACTTCGGAGGC 943
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 858 CGAGTGTTTGCAAGAAAAGACTGAAGTAGACAAGAAGCTGTCGTCATTCACTTCGGAGGC 917
Query 944 AGCATCTTCTTCAGATAACAGTGTATTGGTTAAACATCTTCAGGAAGAACTTAAACGCTA 1003
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 918 AGCATCTTCTTCAGATAACAGTGTATTGGTTAAACATCTTCAGGAGGAACTTAAACGCTA 977
Query 1004 TGAAGCTGAAGTGCGAGAAGCTAGAAAGTTAAAATCACGGCATTTAGATGCGGAGTTGTT 1063
||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||
Sbjct 978 TGAAGCTGAAGTGCGAGAAGCTAGAAAATTAAGATCACGGCACTTAGATGCGGAGTTGTT 1037
Query 1064 GAATGTGAACTTATTAGAAGAACAAAGCCGTAGGGAGAGGGCAGAGTCAGAGTTATCAAA 1123
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 GAATGTAAAATTATTAGAAGAACAAAGCCGTAGGGAGAGGGCAGAGTCAGAGTTATCAAA 1097
Query 1124 ATTTCATGACTTGCAGCTAAGCATGGAAAAGTTGGAGAATGAATTGTCCTCTTGGAAGTC 1183
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
Sbjct 1098 ATTTCATGACTTGCAGCTAAGCTTGGAGAAGTTGGAGAATGAATTGTCCTCTTGGAAGCC 1157
Query 1184 ATTGCTAAATGACATTCCTGGTGTGTCCTGTCCTGATGACATAGTTATGAGATTCTCGGT 1243
|||||||||||||||||||||||| |||||||||||||||||| |||||| |||||| |
Sbjct 1158 ATTGCTAAATGACATTCCTGGTGTTTCCTGTCCTGATGACATATTTATGAAATTCTCAGC 1217
Query 1244 GCTACAGAATGAGGTGGTTCAAAGCACTATGAAGATTGGGGAAGCAAGTACCCGTATTAA 1303
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1218 GCTACAGAATGAGGTGGTTCAAAGCACTATGAAGACTGGGGAAGCAAGTACACGTATTAA 1277
Query 1304 ACAACTGGAGGAGACACTGGAGGCTATACAACTTGGCAGACAGAATGCTGTAAGTGAGGC 1363
||||||||||||| | |||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 1278 ACAACTGGAGGAGGCTCTGGAGGCTACACAACTTGGCAGACAGAATGCTGAAACTGAGGC 1337
Query 1364 TGCATTAGCGAAAGAGAAATCTGAGGCTCTCAAAACAGACGTGAAGAGAATTGAAGTAAT 1423
||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 1338 TGCATTAGCGAAAGAGAAATCTGAGGCCCTCAAAACAGATGTGAAGAGGATTGAAGTAAT 1397
Query 1424 GCTCACTTTGGTCACGGAGGAGAAAGAACAGTTGAAAGCTGTTGTTAATGAATTAAGGAA 1483
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398 GCTCACTTTGGTAACGGAGGAGAAAGAACAGTTGAAAGCTGTTGTTAATGAATTAAGGAA 1457
Query 1484 GTCAAACAGTGAAGGATCTGTGTCTGGAGCCGCAGATGGAGCCCTTATTCAGGGGTTTGA 1543
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1458 GTCAAACAGTGAAGGATCTGTGTCTGGAGCCGCAGATGGAACCCTTATTCAGGGGTTTGA 1517
Query 1544 ATCTTCTCTTGCAAAGAAGGAGAACTATATTAAGGATTTAGAGCAGGATCTAAATCAACT 1603
|||||||||||||||||||||||| |||||||||||||| ||||||||||||| | ||||
Sbjct 1518 ATCTTCTCTTGCAAAGAAGGAGAAATATATTAAGGATTTGGAGCAGGATCTAAGTGAACT 1577
Query 1604 GAAGGATGTCAATAATCGTCAACGTACTGAAATAGAACTTCTAAATGAGAAACTAGTTGA 1663
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 1578 GAAGGATGTCAATAATCGCCAGCGTACTGAAATAGAACTTCTAAATGAGAAACTAGTCGA 1637
Query 1664 TGAAGCAAGGAGGAATAAGTCGCTGGAAAGGGATAGTGATCGTCTTCGCTCTGAGATCTC 1723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1638 TGAAGCAAGGAGGAATAAGTCGCTGGAAAGGGATAGTGATCGTCTTCGCTCTGAGATCTC 1697
Query 1724 TTTACTGGAGTCAAAGCTGGGTCATGGTGATTAT-TCTGCCGCAAATACAAGGGTTTTGC 1782
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1698 GTTACTGGAGTCAAAGCTGGGTCATGGTGATT-TCTCTGCCGCAAATACAAGGGTTTTGC 1756
Query 1783 GCATGGTGAATACTCTTGGTGTTGAAAACGAGGCAAAACAAACAATAGAGGCTTTACAAG 1842
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1757 GCATGGTGAATACTCTTGGTGTTGAAGACGAGGCAAAACAAACAATCGAGGCTTTACAAG 1816
Query 1843 CTGAGTTACAGAAGACAAAAGAAAGACTTCAAGCTGTTGAAGAATTAAAGAGCCAGTCTG 1902
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1817 CTGAGTTACAGAAGTCAAAAGAAAGACTTCAAGCTGTTGAAGAATTAAAGAGCCAGACTG 1876
Query 1903 GAGATGCTGGGAAGCTAGTTGACTCTCATATAACTGGAAAGATTGCTCAACTAAAAGAGC 1962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1877 GAGATGCTGGGAAGCTAGTTGACTCTCATATAACTGGAAAGATTGCTCAACTAAAAGAGC 1936
Query 1963 AAAATGCTACGCTTGAAAAACGTGAAGAGAGGTACAAAACTGTTTTTGCTGATAGAATTT 2022
||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1937 AAATTGCTACACTTGAAAAACGTGAAGAGAGGTACAAAACTGTTTTCGCTGATAGAATTT 1996
Query 2023 CCGTGTTTAGAAGGGCTTGTTGTGAGCTTTTTGGTTATAAGATTGTAATGGACGAACATC 2082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1997 CCGTGTTTAGAAGGGCTTGTTGTGAGCTTTTTGGTTATAAGATTGTAATGGACGAACATC 2056
Query 2083 AGCGTCCCAATGGAATCCCAGTGACTCGGTTTACTCTCCAGTCTATATATGCTCAAAGTG 2142
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 2057 AGCGTCCCAATGGAATCCCAGTGACTCGGTTCACTCTCCAGTCTATATATGCCCAAAGTG 2116
Query 2143 ATGATGAAAAACTCGAGTTTGAATACGAGTCAGGAAACACCAGTATTCTAAACAATGAGT 2202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2117 ATGATGAAAAACTCGAGTTTGAATACGAGTCAGGAAACACCAGTATTCTAAACAATGAGT 2176
Query 2203 ATGCCTCTCAGGGCGACATAGCGAAGCAGATAGAAATATTCATCAGGAAATTCAACTCGA 2262
| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2177 ACGCCTCTCAGGGTGACATAGCGAAGCAGATAGAAATATTCATCAGGAAGTTCAACTCGA 2236
Query 2263 TTCCAGCTTTTACAGCCAACTTAACGATGGAATCATTCAACCGTCGGACGCTATATTGAG 2322
||||||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 2237 TTCCAGCTTTTACCGCCAACTTAACAATGGAATCATTCAACCGCCGCACGCTATATTGAG 2296
Query 2323 AGCA-CTGCGTCCTTATTTCCAACTCTGTGTTTTGTATATTTCTAAAGCCTGCTGAATAG 2381
|| | ||| |||||||||||||| | ||||||||||||||||||| ||||||||||||
Sbjct 2297 AG-ATCTGATTCCTTATTTCCAACCCC-TGTTTTGTATATTTCTAAATCCTGCTGAATAG 2354
Query 2382 AAACTGAAACTCGAAAGCC-GCAG 2404
|||||||||||| |||| | ||||
Sbjct 2355 AAACTGAAACTC-AAAGGCTGCAG 2377
Score = 119 bits (64), Expect = 1e-25
Identities = 74/79 (94%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 2435 TCTGGTTCGTTATGTCTGCTATAATTGTGGTGTCAGTAACTCTATTTTGGTATGAAAGAA 2494
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2378 TCTGGTTCATTATGTCTGCTAGAATTGTGGTGTCAGTAACTCTATTTTGGTATGAAAGAA 2437
Query 2495 ACTAGTTTCGATTTACTCA 2513
| | |||| ||||||||||
Sbjct 2438 ATTGGTTTGGATTTACTCA 2456
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99186997980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5