BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49920.1
Length=1455
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331394 jgi|Araly1|331394|fgenesh1_pm.C_scaffold_8000737 1243 0.0
> Ahg331394 jgi|Araly1|331394|fgenesh1_pm.C_scaffold_8000737
Length=858
Score = 1243 bits (673), Expect = 0.0
Identities = 810/873 (93%), Gaps = 21/873 (2%)
Strand=Plus/Plus
Query 361 ATGGCGGAGGAGAGATCGCC--G-AGTAAGGTGAAGTTCATGTGCAGTTTTGGCGGCAGA 417
|||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGCGGAGGAGAGATCGCCGAGTAGTAAGGTGAAGTTCATGTGCAGTTTTGGAGGCAGA 60
Query 418 ATCCTCCCTAGACCATCGGACAGTGTTCTCAAATATGTCGGCGGAGAGACTCGCGTCGTT 477
||||||||||||||||| ||| ||||||| |||||||||||||| |||||||||||| ||
Sbjct 61 ATCCTCCCTAGACCATCCGACGGTGTTCTTAAATATGTCGGCGGTGAGACTCGCGTCATT 120
Query 478 GCTGTATCTCCTGACATCTCCTTCTCCGAACTCATGAAGAAACTTACGGCAATCACAGAG 537
||||||||||| ||||||||||||||||||||| ||||||||||| | ||||||||||||
Sbjct 121 GCTGTATCTCCCGACATCTCCTTCTCCGAACTCGTGAAGAAACTTGCCGCAATCACAGAG 180
Query 538 AACGATATTGTGCTCAAATACCAGATCATTCCAGAAGATCTTGATGCATTAGTTTCTGTA 597
|||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 181 AACGATATCGTGCTCAAATACCAGATCATTCCAGAAGATCTTGATGCATTAGTGTCCGTT 240
Query 598 AAGTCTGATGAAGATGTGAAACACATGATAGAGGAATATAACCGTCATGAAACACCCAAG 657
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 AAGTCTGATGAAGATGTGAAACACATGATAGAGGAATATAACCGTCATGAAACCCCCAAA 300
Query 658 CTCAGAACTTTCTTGTTTCCTGCAAACCCAGTGGTTCTTGAGAGTCAGTTAGGCCCCATC 717
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 301 CTCAGAACCTTCTTGTTTCCTGCAAACCCAGTGGTTCTTGAGAATCAGTTAGGCCCGATC 360
Query 718 GAGCCACAAACCATAGAGCAACGCTACATTGAAGCCATCAATGGCATTCTTCGCACATCC 777
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 361 GAGCCACAAACCATAGAGCAACGCTATATCGAAGCCATCAATGGCATTCTTCGCACATCC 420
Query 778 AAGAGTGCTACTGCTCTTCGTGCTCCCATCAAAACACGACCTTCCTTCACCGTCTCTACT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAGAGTGCTACTGCTCTTCGTGCTCCCATCAAAACACGACCTTCCTTCACCGTCTCTACT 480
Query 838 TGCTCCTCTCCCAAATCAGAATCA-C-C-TGATGGATACAGTCACGAGCCGCCAGAAACG 894
|||||||||||||||||||||||| | | |||||||||||||||||||| ||||||||||
Sbjct 481 TGCTCCTCTCCCAAATCAGAATCATCACCTGATGGATACAGTCACGAGCTGCCAGAAACG 540
Query 895 AGTTTTCAGAACAACTACCAATTGAGCCGGCTTTACCCAATGCATAGAGTGCATAGCAGT 954
||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 541 AGTTTTCAGAATAACTACCAATTGAGCCGGCTTTACCCAATGCATAAAGTACATAGCAGT 600
Query 955 CCCAACATCTCACACCAGCTGCAGCCACACAGCCACTACCACAACCACAACCACAATGCA 1014
|||||||||||||| |||||||||||| ||||||||| ||||||| |||
Sbjct 601 CCCAACATCTCACAGCAGCTGCAGCCATACAGCCACTTCCACAAC------------GCA 648
Query 1015 TACGTGCAGCCTCCTACTAACTACTTAACGTGTAGGCCACGACTACCAACACCGTTAGAA 1074
||| |||||||||||| | ||||||||| |||||||| |||| |||||| || |||||
Sbjct 649 TACTTGCAGCCTCCTA--A-CTACTTAACCTGTAGGCCGCGACCACCAACTCCATTAGAC 705
Query 1075 ATTCCCAGAGGCATCGGTTGGGACCAATCATACACAACCACACATAACTCAGGTGGCGGT 1134
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 706 ATCCCCAGAGGCATCGGTTGGGACCAATCATACACAACCACACATAACTCAGGTTGTGGT 765
Query 1135 AATGGCAAGTACGGGTGCAATGATGACCGCAGGTTCTGGGGAAGAGCAAGCAGCGTTCCT 1194
||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 AATGGTAAGTGCTGGTGCAATGATGACCGCAGGTTCTGGGGAAGAGCAAGCAGCGTTCCT 825
Query 1195 CAAAGTCCTAGGAACCATGGACTCCGCCTCTGA 1227
||||||||||||||||| |||||||||||||||
Sbjct 826 CAAAGTCCTAGGAACCACGGACTCCGCCTCTGA 858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54430960105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5