BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49945.1
Length=1854
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331396 jgi|Araly1|331396|fgenesh1_pm.C_scaffold_8000739 2183 0.0
Ahg929910 jgi|Araly1|929910|scaffold_302367.1 182 1e-44
> Ahg331396 jgi|Araly1|331396|fgenesh1_pm.C_scaffold_8000739
Length=2124
Score = 2183 bits (1182), Expect = 0.0
Identities = 1343/1420 (95%), Gaps = 14/1420 (1%)
Strand=Plus/Plus
Query 47 CTCTTCCTCCATTATCGTATTATCGTAGCTTCTCCATTCGAAGGATTTGATGCTGAAGAA 106
|||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||
Sbjct 709 CTCTTCCTCCATTATCGTATCATCGTAGCTTCACAATTCGAAGGATTTGATGCTGAAGAA 768
Query 107 GACGACGTTACCGACGAttcctctcaccttcttcaccactcactccctccgcctcttctc 166
||||| ||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 769 GACGATGTTTCCGACGATTCCTCTCACCTTCCTCACCACTCCCTCCCTCCGCCTCTTCTC 828
Query 167 actcagtctcactcatcactctcCGATC-----CC-GATCCGGAGCCGGAACCTTCTTCC 220
|||||||||||||||||||||||||||| || || ||||| |||||| |||||||
Sbjct 829 ACTCAGTCTCACTCATCACTCTCCGATCTGGAACCGGAACCGGAACCGGAATCTTCTTCT 888
Query 221 GCCGAATGTAAATCCGATCTCATCACTGAATCAGATCTCGAGCATCAATCCGATTCGAAA 280
||||||| ||| || ||||||||| |||||||||||| ||||||| |||||||||||| |
Sbjct 889 GCCGAATCTAACTCTGATCTCATCTCTGAATCAGATCCCGAGCATGAATCCGATTCGAGA 948
Query 281 ACTCCCTCGTCTACACCATTTGAGTACTGGGACGAAGACGAGTTCGAAGGACTACCAG-T 339
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 949 ACTCCCTCGTCTACGCCATTTGAGTACTGGGACGAAGACGAGTTCGAGGGACTACC-GAT 1007
Query 340 TGAGATAGAGACACTTGAATCTCCATTGATTACAGAAAACGGAACTCATGCTGATCCAAA 399
||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||
Sbjct 1008 TGAGATAGAGACACTTGAATCTCCATTGATTGCAGAAAACGCAACTCATACTGATCCAAA 1067
Query 400 GACGCCAGATCTCAAGACTTCATCGGAAGCTCAAGGAG-ACACTAATGATCAAACGAAGA 458
||||| |||||||||||||||||||||| |||||| || | |||| |||||| | |||||
Sbjct 1068 GACGCTAGATCTCAAGACTTCATCGGAACCTCAAGAAGTA-ACTACTGATCAGATGAAGA 1126
Query 459 AGAAGAAGTCGTACGCGGTGGAGATCGCTTGCGTCTG-TTTCTTAATCGCACTCGCAATC 517
||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||
Sbjct 1127 AGAAGAAGTCGTACGCGGTGGAGATCGCTTGCGTC-GTTTTCTTAATCGCTCTCGCAATC 1185
Query 518 AACTACTTCGTTGGTAAACGTGAGAACGAGAGTCTCGCATTAGCTTGGGCGGCGAAATTT 577
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1186 AACTACTTCGTTGGTAAACGTGAGAACGAGAGTCTCGCTTTAGCTTGGGCGGCGAAATTC 1245
Query 578 GCTTCTAAGGATACAATATTCCAGAAGAATTTTAGTATGCTTGGAGTTAGTGAATTAGAG 637
||||| |||| ||| ||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1246 GCTTCCAAGGGTACTATATTCCAGAAGAATTTTAGTTTGCTTGGAGTTAGTGAAGGAGAG 1305
Query 638 GATTCGCCATTGTTGTTAAAAGAAGCCTTAAATGTGTTCAAATTCTACGCGAGTGGTCGT 697
||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1306 GATTCGCCATTGTTGTTGAAAGAAGCGTTAAATGTGTTTAAATTCTACGCGAGTGGTCGT 1365
Query 698 AGGTATTGCCATGGATTGTTAGCTACTATGGAGCTTAAGAGTAGACATGATTTGATCTCT 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 AGGTATTGCCATGGATTGTTAGCTACTATGGAGCTTAAGAGTAGACATGATTTGATCTCT 1425
Query 758 AGGGTGTTTAATTTGGTTGTTCCTTGTAAAGATGAGATCACTTTTGAGGTTTATATGAAT 817
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1426 AGGATGTTTAATTTGGTGGTTCCTTGTAAAGATGAGATCACTTTTGAGGTTTATATGAAT 1485
Query 818 GAAGAAACTATGGATCATGTTGTGTTTGCTATGACGAAGAAGAAGGCTGCAAAAACTATG 877
||||| ||||||||||||||||||||||| ||| ||| ||| |||||||| |||||||||
Sbjct 1486 GAAGATACTATGGATCATGTTGTGTTTGCGATGGCGAGGAAAAAGGCTGCGAAAACTATG 1545
Query 878 CAAAAGGAGATGAGGGATTTGCAAAGATTTGCTGGGATTGTGTCTCCTCCTGCTGGAAGG 937
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||
Sbjct 1546 CAAAAGGAGATGAGGGATTTGCAGAGATTCACTGGGATTGTGTCTCCTCCTGCTGGGAGG 1605
Query 938 AAATGGGTGTCGGAGGAGTTCGCCT-TGATCTCTGAATCCAAGGAAGTTGCTGCGGATTT 996
|||||||||||||||||||| | || |||||||||||||||||||||||||||||||| |
Sbjct 1606 AAATGGGTGTCGGAGGAGTTAG-CTGTGATCTCTGAATCCAAGGAAGTTGCTGCGGATAT 1664
Query 997 GATCACTGACACTGTTCTTGATCAGGTTTTTGGTGACAAGGCTGTGGATAAGTATGGGAA 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 GATCACTGACACTGTTCTTGATCAGGTTTTTGGTGACAAGGCTGTGGATAAGTATGGGAA 1724
Query 1057 GAATTTCATGTCGATGCATATATCTGACCAACACCCTGGCAAGCACAAGAAGATGATGCT 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1725 GAATTTCATGTCGATGCATATATCTGACCAACACCCTGGCAAGCACAAGAAGATGATGCT 1784
Query 1117 TTTCAAGTTTTCTTTACCTGATGCTAAACATATGGATGATATTGTCCGGTTGGTGGCGCT 1176
|||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1785 TTTCAAGTTTTCCTTACCCGATGCTAAACATATGGATGATATTGTCCGCTTGGTGGCGCT 1844
Query 1177 AATTCCATATTACATCGACTTAGTAGGACGATACAGACTCAGCTCGCAGGCGCGGAACAA 1236
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1845 AATTCCATATTACATCGACTTAGTAGGTCGATACAGACTCAGCTCCCAGGCGCGGAACAA 1904
Query 1237 AACTGAGAGTGGTAGGCAAAAGGCAGCAGAGGAAGCATACAAGGAACTTCATAACGCGAG 1296
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1905 AACTGAGAGTGGTAGGCAAAAGGCAGCAGAGGAAGCATACAAGGAACTTCAGAACGCGAG 1964
Query 1297 GCAAGAGGCATTgcagaagaagaaagcagaaaagaagaaaatgatggaggaagcggaagc 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1965 GCAAGAGGCATTGCAGAAGAAGAAAGCAGAAAAGAAGAAAATGATGGAGGAAGCGGAAGC 2024
Query 1357 aaagatgagcgcagaagTGATAAGGAAGAAAGAGGCAAAAGAGAGAGCAAGGCAGGTGAA 1416
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2025 AAAGCTGAGCGCAGAAGTGATAAGGAAGAAAGAGGCAAAAGAAAGAGCAAGGCAGGTGAA 2084
Query 1417 AAAGGCAGTACCAAAAATGAAGATGAGCCGTAGTCACTAG 1456
||||||||||||||||||||||||||||||||||||||||
Sbjct 2085 AAAGGCAGTACCAAAAATGAAGATGAGCCGTAGTCACTAG 2124
> Ahg929910 jgi|Araly1|929910|scaffold_302367.1
Length=1031
Score = 182 bits (98), Expect = 1e-44
Identities = 144/166 (87%), Gaps = 4/166 (2%)
Strand=Plus/Plus
Query 858 AGAAGGCT-GCAAAAACTATGCAAAAGGAGATGAGGGATTTGCAAAGATTTGCTGGGATT 916
|||||| | ||||||| |||| ||||||| | ||||||||||| ||||| |||| |||
Sbjct 4 AGAAGG-TAGCAAAAAAGATGCTAAAGGAGCTAAGGGATTTGCAGAGATTCGCTGAGATA 62
Query 917 GTGTCTCCTCCTGCTGGAAGGAAATGGGTGTCGGAGGAGTTCGCCT-TGATCTCTGAATC 975
||||||||||| || || ||||| |||||||| |||||||| | || |||||||||||||
Sbjct 63 GTGTCTCCTCCCGCCGGGAGGAAGTGGGTGTCCGAGGAGTTAG-CTGTGATCTCTGAATC 121
Query 976 CAAGGAAGTTGCTGCGGATTTGATCACTGACACTGTTCTTGATCAG 1021
||||||||||||||||||| ||||||| |||||||| |||||||||
Sbjct 122 CAAGGAAGTTGCTGCGGATATGATCACAGACACTGTGCTTGATCAG 167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69628967860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5