BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49950.1
Length=1816
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495050 jgi|Araly1|495050|fgenesh2_kg.8__866__AT5G49950.1 2724 0.0
Ahg342141 jgi|Araly1|342141|fgenesh1_pg.C_scaffold_3001904 191 2e-47
> Ahg495050 jgi|Araly1|495050|fgenesh2_kg.8__866__AT5G49950.1
Length=1670
Score = 2724 bits (1475), Expect = 0.0
Identities = 1606/1671 (96%), Gaps = 2/1671 (0%)
Strand=Plus/Plus
Query 36 CAAAAGGTCTTTACTTTGAGATTGTCACTATGAATTGCGCAATCACAGAGGATGATTTGA 95
|||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1 CAAAAGATCTTTACTTTGAGATTGTCCCCATGAATTGCGCAATCACAGAGGATGATTTGA 60
Query 96 TCTCTCCTTACCTCATCATCTTCAAATCGCTCTTACTCATCCCAATCTCTCACTATCTCA 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTCTCCTTACCTCATCATCTTCAAATCGCTCTTACTCATCCCAATCTCTCACTATCTCA 120
Query 156 TCTTCTTCTTCCTCACAATCTTACT-TTTCCTCTACTTCTTCCTAGAGATTCATTTTCCT 214
|||||||||||||||||||| || | ||| |||||||||||||| ||||||||| | |||
Sbjct 121 TCTTCTTCTTCCTCACAATCCTAGTGTTT-CTCTACTTCTTCCTCGAGATTCATATCCCT 179
Query 215 AAAGCAGATCCTATCTCTCTTACCTTCAATCCAAACTCTGACTTCTGCAAGTTTATTGTC 274
|||||||| ||||||||||| || ||||||||||||||||| |||||| |||||||||||
Sbjct 180 AAAGCAGACCCTATCTCTCTCACTTTCAATCCAAACTCTGAGTTCTGCCAGTTTATTGTC 239
Query 275 TCCAAGTGTCGTCTCCTTCATGGACGATACTTTCCTACGTTCTGGCTTTCAAGCCCTCAT 334
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 240 TCCAAGTGTCGTCTCCTTCATGGACGATACTTTCCTACGTTTTGGCTTTCAAGCCCTCAT 299
Query 335 CTTCAAACAGCTTTCCTTACCCTTTTTGGAAAGTCTCCTCCTTTCTCCTATAAGCGAATT 394
||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||
Sbjct 300 CTTCAAACAGCTTTCCTTAGCCTTTTTGGAAAGTCTCCTCCTTTTTCCTATAAAAGAATT 359
Query 395 CTCTATCAGGCAACAGATGGTGGCACAATTGCTTTGGATTGGTTAATGCATTCTGATGTT 454
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 360 CTCTATCAGGCAACAGATGGTGGCACAATTGCTTTGGACTGGTTAATGCATTCTGATGTT 419
Query 455 GTGGAAGGTATATCTCAAGTGGTCAATGCCTCAAATCCAGGAACTGATAGGACTCCAATT 514
|||||||| |||||||| |||||||||| ||||| | |||||||||||||||||||||||
Sbjct 420 GTGGAAGGCATATCTCAGGTGGTCAATGACTCAACTTCAGGAACTGATAGGACTCCAATT 479
Query 515 GCTATTATAGTTCCAGGGCTCACTAGTGATTCTTCTGCTGCATATATTAAACATATTGCC 574
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GCTATTGTGGTTCCAGGGCTCACTAGTGATTCTTCTGCTGCATATATTAAACATATTGCC 539
Query 575 TTCAGGCTGGCAAAGGAAGGATGGAATGTTGTTGTGCAAAACCACCGTGGACTTGGAGGG 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTCAGGCTGGCAAAGGAAGGATGGAATGTTGTTGTGCAAAACCACCGTGGACTTGGAGGG 599
Query 635 ATATCTTTAACTTCTGACTGCGTCTACACTGCCGGGTGGACAGAAGATCTTCGGAAAGTA 694
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 600 ATATCTTTAACTTCTGACTGCGTCTACACTGCTGGGTGGACAGAAGATCTTCGGAAAGTA 659
Query 695 ATTGCTCACATCCATTCTCAGTTCCCAGAGGCTCCTTTGTTTGCTGTTGGAACAAGCATT 754
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 660 ATTGATCACATCCATTCTCAGTTCCCAGAGGCGCCTTTGTTTGCTGTTGGAACAAGCATT 719
Query 755 GGTGCCAACGTTCTGGTAAAATATCTTGGGGAGGATGGGCCAAATACACCTCTTATTGGA 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GGTGCCAACGTTCTGGTAAAATATCTTGGGGAGGATGGGCCAAATACACCTCTTATTGGA 779
Query 815 GCTACTGCTGTGTGTTCTCCTTGGGATCTATTGATATGTGATCGATTTATCAACCGCAAA 874
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 780 GCTACTGCTGTGTGTTCTCCTTGGGATCTATTGATATGTGACCGATTTATCAACCGCAAA 839
Query 875 CTCGTGCAAAAAGTGTATGACAGAATGCTTACTATTGGTCTACAAGGTTATGCACAATTG 934
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CTCGTGCAAAAATTGTATGACAGAATGCTTACTATTGGTCTACAAGGTTATGCACAATTG 899
Query 935 CACCATTCCATCATTTCTCGTATAGCCGATTGGGAAGGCATTAAGAAGTCACGTTCAGTT 994
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CACCATTCTATCATTTCTCGTATAGCCGATTGGGAAGGCATTAAGAAGTCACGTTCAGTT 959
Query 995 CGAGAGTTTGACAACTACGCCACCAGGCTTGTTGCCAAATTCGAGACAACTGATACATAC 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CGAGAGTTTGACAACTACGCCACCAGGCTTGTTGCCAAATTCGAGACAACTGATACATAC 1019
Query 1055 TATAGACGTTCAAGCAGTTCACAATATGTGGAAAATGTCGCTGTTCCGCTCCTTTGCATC 1114
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1020 TATAGACGTTCAAGCAGTTCACAATATGTGGGAAATGTCGCTGTTCCGCTCCTTTGCATC 1079
Query 1115 AGTGCTTTGGATGATCCAGTTTGTACTAGAGAAGCTATTCCTTGGGATGAATGTAGGGCA 1174
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1080 AGTGCTTTGGATGATCCAGTTTGTACTAGGGAAGCTATTCCTTGGGATGAATGTAGGGCA 1139
Query 1175 AACAAAAACATAGTTCTGGCTACCACAACACATGGTGGTCATCTAGCTTACTATGAAGGG 1234
||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 1140 AACAAAAACATAGTTCTCGCAACCACAACACATGGTGGTCATCTTGCTTACTATGAAGGG 1199
Query 1235 TTGACAGCGTCAAGCATGTGGTGGACAAGGGTTGTACACGAATATTTTGAAGTGCTACTC 1294
|||||||| |||||||||||||| |||||| ||| || |||||||||||||||||||||
Sbjct 1200 TTGACAGCAACAAGCATGTGGTGGGCAAGGGCTGTGCAAGAATATTTTGAAGTGCTACTC 1259
Query 1295 TCCAGCCCCTTTGCAGACAGAAGACACAAGATCATCCCCGAACCATTGGGATCTTCGATT 1354
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1260 TCCAGCCCCTTTGCAGACAGAAGACAGAAGATCATCCCCGAACCATTAGGATCTTCGATT 1319
Query 1355 GATCAGGGACCATTCGTGGATGCTGGAGAACACGGGATGGTTGCTGCTGCAAGTGAAGTG 1414
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1320 GATCAGGGACCATTCGTGGATGCTGGAGAAGACGGGATGGTTGCTGCTGCAAATGAAGTG 1379
Query 1415 GACACAACAAGAGCTGATGCAGAACCAGAGGATAATGCTCAAATTTATGTAAAGACAAGT 1474
|||||||||||| |||||| |||||||||||||| |||||||||| ||| ||||||||||
Sbjct 1380 GACACAACAAGACCTGATGTAGAACCAGAGGATATTGCTCAAATTGATGAAAAGACAAGT 1439
Query 1475 AATCATCTACACAAGGACAATAATCCTCAAGTTTATAACAATATACTCGGTCCTTTGAAG 1534
||| ||| |||||||||||||| || |||||||||||||| | |||||||||||||||||
Sbjct 1440 AATTATCCACACAAGGACAATACTCTTCAAGTTTATAACAGTTTACTCGGTCCTTTGAAG 1499
Query 1535 AAGAGAGTGGATCAGCTTTCAAGATACAGCCGGAAATCGATTTGGCTATTGGCATACATT 1594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 AAGAGAGTGGATCAGCTTTCAAGATACAGCCGGAAATCGATTTGGCTATTGGCATACATT 1559
Query 1595 GCTATAGTCACGACGTGGCCACTAGTAGGACCTGCACTTTTGTTTTCAATTAAGAGAAGA 1654
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 1560 GCTATAGTCACGACGTGGCCACTTGTAGGACCTGCACTTTTGTTTTCAATCAAGAGGAGA 1619
Query 1655 TTCAGAAAGCTCGTAGAAAAATAGAGATCATATTCTACTAGTGCAAAGTAA 1705
||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1620 TTCAGAAAGCTCGTAGAAAAATAGAAATCATATTCTACTAATGCAAAGTAA 1670
> Ahg342141 jgi|Araly1|342141|fgenesh1_pg.C_scaffold_3001904
Length=1374
Score = 191 bits (103), Expect = 2e-47
Identities = 123/133 (92%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 1038 AGACAACTGATACATACTATAGACGTTCAAGCAGTTCACAATATGTGGAAAATGTCGCTG 1097
||||||||||||||||||||||||||||||||||| | |||||||||| ||||||| |||
Sbjct 1118 AGACAACTGATACATACTATAGACGTTCAAGCAGTGCGCAATATGTGGGAAATGTCTCTG 1177
Query 1098 TTCCGCTCCTTTGCATCAGTGCTTTGGATGATCCAGTTTGTACTAGAGAAGCTATTCCTT 1157
|||| |||||||| | |||||||||||| ||||||||||||| ||| |||||||||||||
Sbjct 1178 TTCCACTCCTTTGTACCAGTGCTTTGGACGATCCAGTTTGTAATAGGGAAGCTATTCCTT 1237
Query 1158 GGGATGAATGTAG 1170
|||||||||||||
Sbjct 1238 GGGATGAATGTAG 1250
Score = 86.1 bits (46), Expect = 8e-16
Identities = 48/49 (98%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 934 GCACCATTCCATCATTTCTCGTATAGCCGATTGGGAAGGCATTAAGAAG 982
||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1071 GCACCATTCTATCATTTCTCGTATAGCCGATTGGGAAGGCATTAAGAAG 1119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68181538550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5