BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49970.1
Length=1874
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495052 jgi|Araly1|495052|fgenesh2_kg.8__868__AT5G49970.1 2575 0.0
> Ahg495052 jgi|Araly1|495052|fgenesh2_kg.8__868__AT5G49970.1
Length=1819
Score = 2575 bits (1394), Expect = 0.0
Identities = 1704/1846 (92%), Gaps = 51/1846 (3%)
Strand=Plus/Plus
Query 17 ATTGGGCTAAATGAGGAATGTGATACGCAGAGTCACAACAATGACATTCACCTTCCttct 76
|||||||||||||||||||||||| || | ||| | ||||||||||||||||||||| ||
Sbjct 1 ATTGGGCTAAATGAGGAATGTGATGCGTAAAGTGAGAACAATGACATTCACCTTCCTCCT 60
Query 77 ccaat---caccaccactcccaatttctccatctcctcctcaattctctctttcctcttc 133
||||| |||||||||||||||||||| | ||||||||||||||||||| | ||| ||
Sbjct 61 CCAATCACCACCACCACTCCCAATTTCT-C--CTCCTCCTCAATTCTCTCTCTACTC-TC 116
Query 134 -tcctTTATCAAAAACGCAGCGATTCATCACTCCAAGCCAGGGCTCTCG--T---CT-A- 185
|||| || | || ||||||||| ||||||||||||| |||||||| | || |
Sbjct 117 TTCCTCTA-C--CCACCCAGCGATTCCTCACTCCAAGCCACGGCTCTCGTCTACGCTCAG 173
Query 186 ---C-----GGACTTTGTGTACCAAAGT-CATCATACCAAACATGCAAGATTCAGGATCA 236
| ||||| ||||||||||| | |||||||||||||||| | ||||| ||||||
Sbjct 174 GTTCGGTGAGGACTCTGTGTACCAAA-TCCATCATACCAAACATGGAGGATTCGGGATCA 232
Query 237 CCACCACTCTCTTATCTTACTCAGCGAGAAGCCGCTGAGATTGATGAGACCTTGATGGGT 296
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 233 CCACCACTCTCTTATCTTACTCAGCGAGAAGCCGCTGAGATTGATGAAACCTTGATGGGT 292
Query 297 CCTCTTGGTTTCTCCATTGATCAGCTCATGGAATTGGCTGGTCTTAGTGTGGC-AGCTTC 355
|||||||| |||||| ||||||||||||||||||||||||||||||| || || | ||||
Sbjct 293 CCTCTTGGCTTCTCCGTTGATCAGCTCATGGAATTGGCTGGTCTTAGCGTCGCTA-CTTC 351
Query 356 AATTGCTGAGGTTTATAAACCGGAAGAATATAGCCGGGTTCTAGCTATCTGTGGTCCTGG 415
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 352 AATTGCTGAGGTTTATAAACCGGGAGAATATAGCCGGGTTCTAGCAATCTGTGGTCCTGG 411
Query 416 GAACAATGGTGGTGATGGTTTGGTGGCGGCGAGGCATTTGCACCACTTTGGATATAAACC 475
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 412 AAACAATGGTGGTGATGGTTTGGTGGCGGCGAGGCATCTGCACCACTTTGGATATAAACC 471
Query 476 GTTTATTTGTTATCCCAAACGTACAGCCAAGCCACTTTATACTGGACTGGTCACTCAGTT 535
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 472 GTTTATTTGTTATCCCAAACGTACAGCCAAGCCGCTTTATACTGGACTGGTCACTCAGTT 531
Query 536 GGATTCACTCTCAGTCCCTTTTGTTTCCGTTGAGGATCTGCCGGATGACTTGTCAAAGGA 595
||| |||||||||||||| |||||||| | ||| ||||||||||| ||||||||||||||
Sbjct 532 GGAGTCACTCTCAGTCCCATTTGTTTCAGCTGATGATCTGCCGGAAGACTTGTCAAAGGA 591
Query 596 CTTTGATGTTATTGTAGATGCAATGTTTGGGTTTTCATTCCATGGAGCTCCCAGGCCTCC 655
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 592 CTTTGATGTTATTGTAGATGCAATGTTTGGGTTTTCATTTCATGGTGCTCCAAGGCCTCC 651
Query 656 TTTTGATGACCTCATCCGGCGATTAGTATCGTTACAGAACTATGAGCAGACTCTTCAAAA 715
||||||||||||||||||| |||| || || || ||||||||||||||||| || |||||
Sbjct 652 TTTTGATGACCTCATCCGGAGATTGGTGTCCTTGCAGAACTATGAGCAGACGCTCCAAAA 711
Query 716 ACACCCAGTCATTGTCTCTGTGGATATTCCCTCTGGTTGGCACGTTGAAGAAGGAGACCA 775
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 712 ACACCCAGTCATCGTCTCTGTAGATATTCCCTCTGGTTGGCACGTTGAAGAAGGAGACCA 771
Query 776 TGAAGATGGAGGAATTAAGCCTGATATGTTGGTATCTTTGACTGCCCCAAAATTATGTGC 835
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 TGATGATGGAGGAATTAAGCCTGATATGTTGGTATCTTTGACTGCCCCAAAATTATGTGC 831
Query 836 AAAGAGATTCCGTGGCCCTCATCACTTTTTAGGTGGGAGATTTGTACCACCTTCTGTTGC 895
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 832 AAAGAGATTCCGTGGCCCTCATCACTTTTTAGGGGGGAGATTTGTACCACCTACTGTTGC 891
Query 896 AGAAAAGTATAAGCTGGAGCTCCCTAGTTACCCAGGGACATCTATGTGTGTTAGAATTGG 955
||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 892 TGAAAAATATAAGCTCGAGCTCCCTAGTTACCCTGGGACATCGATGTGTGTTAGAATTGG 951
Query 956 TAAACCTCCCAAAGTTGACATATCTGCTATGAGAGTGAACTATGTCTCTCCAGAATTGCT 1015
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 952 TAAACCTCCCAAAGTTGACATTTCTGCTATGAGAGTGAACTATGTCTCTCCAGAATTGCT 1011
Query 1016 TGAGGAGCAGGTTGAAACTGATCCTACGGTACAGTTTCGTAAATGGTTTGATGAGGCAGT 1075
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1012 TGAGGAGCAGGTTGAAACCGATCCTACGGTACAGTTCCGTAAATGGTTTGATGAGGCAGT 1071
Query 1076 TGCTGCTGGATTGAGAGAAACAAATGCTATGGCTTTGTCTACAGCGAACAAGGACAAAAA 1135
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct 1072 TGCTGCTGGATTGAGAGAAACAAATGCTATGGCTTTGTGTACAGCGAACAAGGATAGAAA 1131
Query 1136 ACCCTCATCAAGAATGGTTTTACTAAAAGGATTTGATGAGAATGGATTTGTCTGGTTCAC 1195
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1132 ACCCTCATCAAGAATGGTTTTACTAAAAGGATTTGATGCGAATGGATTTGTCTGGTTCAC 1191
Query 1196 CAACTACGAAAGTAAAAAGGGTTCTGATTTATCAGAAAATCCTAGTGCAGCACTTCTTTT 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 CAACTACGAAAGTAAAAAGGGTTCTGATTTATCAGAAAATCCTAGTGCAGCACTTCTTTT 1251
Query 1256 TTACTGGGAAATTTTGAACCGTCAGGTAAGAATTGAAGGACCAGTGGAAAGAATACCTGA 1315
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1252 TTACTGGGAAAGTTTGAACCGTCAGGTAAGAATTGAAGGACCAGTGGAGAGAATACCTGA 1311
Query 1316 GTCAGAATCCGAGAATTACTTTCATAGTCGTCCTAGAGGAAGTCAGATTGGAGCTATTGT 1375
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 GTCAGAATCGGAGAATTACTTTCATAGTCGTCCTAGAGGAAGTCAGATTGGAGCTATTGT 1371
Query 1376 TAGCAAGCAGAGTTCTGTTGTACCTGGCAGGCATGTTCTATACGACGAATATGAAGAACT 1435
||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| |
Sbjct 1372 TAGCAAGCAGAGTTCTGTTGTACCTGGCAGGCATGTTTTATACGATGAGTATGAAGAATT 1431
Query 1436 GACAAAACAATATTCGGATGGAAGTGTGATACCAAAGCCGAAAAACTGGGGAGGATTCAG 1495
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 GACAAAAAAATATTCAGATGGAAGTGTGATACCAAAGCCGAAAAACTGGGGAGGATTCAG 1491
Query 1496 ACTTAAACCAAACCTTTTCGAGTTTTGGCAGGGACAGCCATCTCGTTTACATGACAGGCT 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1492 ACTTAAACCAAACCTTTTCGAGTTTTGGCAGGGACAGCCATCTCGTTTACATGACAGGCT 1551
Query 1556 GCAGTATTCTCTGCAAGACGTAAACGGGAATCCTGCGTGGAAAATTCATAGATTGGCCCC 1615
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1552 GCAGTATTCTCTGCAAGACGTAAACGGGAATCCTGCATGGAAAATTTATAGATTGGCCCC 1611
Query 1616 ATGACTTCTACTCACTACCTCTT-CCCTGTGAAGAACATGGCTCTTTGTGATT-CATATC 1673
|||||||||||||||||| |||| |||||| ||||| ||| | |||| | || ||||||
Sbjct 1612 ATGACTTCTACTCACTACTTCTTTCCCTGTCAAGAAGATGACAATTTGGGTTTTCATATC 1671
Query 1674 AAACCATTACAATGAGAATAAGATTTTAATTATAGCTGTATAGCGATTTATCTTCTTAAT 1733
|||||||||| |||||||||| ||||||| ||||||||||||| | || | | | |
Sbjct 1672 AAACCATTACGATGAGAATAA-ATTTTAAGTATAGCTGTATAG--A---ATGT-C--ACT 1722
Query 1734 GTGACTAAATTATTAGTGCTTTTCCATTTTCAGCACTTAATACTGTGATTTATTTTAGCT 1793
| |||| | |||||||||||||||||| |||||| || |||||||||||||||||
Sbjct 1723 ---A--AAAT-AGAAGTGCTTTTCCATTTTCATCACTTAGTAATGTGATTTATTTTAGCT 1776
Query 1794 -TTTGTGTTTGATAAACCAATACAAAGATACAACTTGTGTCTTGAC 1838
||| || ||||||| |||||| ||||| |||||||||||||||||
Sbjct 1777 ATTT-TGCTTGATAA-CCAATA-AAAGACACAACTTGTGTCTTGAC 1819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70390772760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5