BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49980.1
Length=2450
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495054 jgi|Araly1|495054|fgenesh2_kg.8__870__AT5G49980.1 3535 0.0
Ahg492408 jgi|Araly1|492408|fgenesh2_kg.7__1841__AT4G24390.1 1471 0.0
> Ahg495054 jgi|Araly1|495054|fgenesh2_kg.8__870__AT5G49980.1
Length=2310
Score = 3535 bits (1914), Expect = 0.0
Identities = 2206/2341 (94%), Gaps = 43/2341 (2%)
Strand=Plus/Plus
Query 4 AAATAATCCCCAAATAATGGAGACGAAGTGGAGAGAGAAAGCTCCCACTCTCTCACACCC 63
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAATAAGCCCCAAATAATGGAGACGAAGTGGAGAGAGAAAGCTCCCACTCTCTCACACCC 60
Query 64 CAAAGcttcttcttcttcttcctcttcttcctcttcctcttctctaatctgaatccaaag 123
|||||||||||||||||| || || ||||||||||| |||||||||||||||||||||||
Sbjct 61 CAAAGCTTCTTCTTCTTCCTCTTCCTCTTCCTCTTCTTCTTCTCTAATCTGAATCCAAAG 120
Query 124 cctctctcttTATGACACAAGATCGCTCAGAAATGTCTGAAGATGACGATGACCAACAAT 183
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 CCTCTCTCTTTATGACACAAGATCGCTCAGAAATGTCTGAAGATGACGACGACCAACAAT 180
Query 184 CTCCACCGTTGGATCTACCCTCTACCGCCATAGCTGATCCTTGCTCATCTTCCTCTTCAC 243
|| |||||||||||||||||||||||||| | | | ||| ||||||||| |||
Sbjct 181 CTTCACCGTTGGATCTACCCTCTACCGCC--A--T-A-----GCT--TCTTCCTCTACAC 228
Query 244 CAAACAAATCTCGTAACTGTATCTCAAATTCTCAAACTTTCCCTGACCATGTTCTCGAAA 303
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 229 CAAACAAATCTCGTAACTGTATCTCAAAGTCTCAAACTTTCCCTGACCATGTTCTCGAAA 288
Query 304 ACGTACTTGAGAACGTTCTTCAGTTCCTAGATTCAAGATGTGACCGTAACGCTGCTTCTC 363
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 ACGTTCTTGAGAACGTTCTTCAGTTCCTAGATTCAAGATGTGACCGTAACGCTGCTTCTT 348
Query 364 TAGTTTGCAAATCTTGGTGGCGTGTTGAAGCTTTGACTCGATCTGAGGTTTTTATTGGTA 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 TAGTTTGCAAATCTTGGTGGCGTGTTGAAGCTTTGACTCGATCTGAGGTTTTTATTGGTA 408
Query 424 ACTGTTACGCTCTTTCTCCGGCGAGGTTGACTCAGAGATTCAAGCGTGTTAGGTCTCTTG 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 409 ACTGTTACGCTCTTTCTCCGGCGAGGTTGACTCAGAGATTCAAGCGTGTTAGGTCACTTG 468
Query 484 TGCTGAAAGGGAAACCTAGGTTTGCTGATTTCAATCTCATGCCTCCTGATTGGGGTGCTA 543
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 TGCTTAAAGGGAAACCTAGGTTTGCTGATTTCAATCTCATGCCTCCTGATTGGGGTGCTA 528
Query 544 ATTTTGCTCCTTGGGTTTCTACTATGGCTCAAGCTTATCCTTGTCTTGAGAAAGTTGATT 603
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 529 ATTTTGCTCCTTGGGTTTCTACTATGGCTAAAGCTTATCCTTGGCTTGAGAAAGTTGATT 588
Query 604 TGAAGAGGATGTTTGTTACTGATGATGATTTAGCTCTTCTTGCTGACTCTTTTCCTGGGT 663
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 TGAAAAGGATGTTTGTTACTGATGATGATTTAGCTCTTCTTGCTGACTCTTTTCCTGGGT 648
Query 664 TTAAAGAGCTTATCTTGGTTTGTTGTGAAGGTTTTGGTACTAGTGGTATCT-CTATTGTT 722
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 649 TTAAAGAGCTTATCTTGGTTTGTTGTGAAGGTTTTGGTACTAGTGGTAT-TGCTATTGTT 707
Query 723 GCCAACAAGTGCAGAAAGCTGAAAGTGCTTGATTTGATTGAGTCTGAGGTCACGGATGAT 782
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 708 ACCAATAAGTGCAGAAAGCTGAAAGTGCTTGATTTGATTGAGTCTGAGGTTACGGATGAT 767
Query 783 GAAGTGGATTGGATCTCTTGTTTCCCTGAGGATGTAACTTGT-TTGGAGTCTTTAGCTTT 841
|||||||||||||| |||||||||||||||||||||||| || ||| | |||||||||||
Sbjct 768 GAAGTGGATTGGATTTCTTGTTTCCCTGAGGATGTAACTAGTCTTGAA-TCTTTAGCTTT 826
Query 842 TGACTGTGTGGAAGCTCCTATCAATTTTAAGGCGCTTGAGGGTCTTGTTGCTAGGTCACC 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 TGACTGTGTGGAAGCTCCTATCAATTTTAAGGCGCTTGAGGGTCTTGTTGCTAGGTCACC 886
Query 902 GTTCTTGAAGAAACTTAGGCTAAACAGGTTTGTGTCTCTTGTGGAGCTACATCGTCTGCT 961
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 887 GTTCTTGAAGAAACTTAGGCTGAACAGGTTTGTGTCCCTTGTGGAGCTACATCGTCTGCT 946
Query 962 ACTTGGAGCTCCACAGCTTACTAGTCTTGGGACTGGTTCATTTAGCCATGATGAGGAACC 1021
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 947 ACTTGGAGCTCCACAGCTTACTAGTCTTGGGACAGGTTCATTTAGCCATGATGAGGAACC 1006
Query 1022 TCAGAGTGAGCAAGAACCAGATTATGCTGCTGCATTTCGTGCTTGTAAATCTGTAGTTTG 1081
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1007 TCGGAGTGAGCAAGAACCAGATTATGCTGCTGCATTTCGTGCTTGTAAATCTGTTGTTTG 1066
Query 1082 CTTGTCAGGGTTTAGAGAGTTGATGCCGGAGTATCTTCCAGCTATCTTTCCGGTGTGCGC 1141
| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 CCTGTCAGGATTTAGGGAGTTGATGCCGGAGTATCTTCCAGCTATCTTTCCGGTGTGCGC 1126
Query 1142 TAATCTCACCTCCCTGAACTTCAGTTATGCTAACATTTCTCCTGACATGTTCAAGCCCAT 1201
||||||||| ||| ||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1127 TAATCTCACTTCCTTGAACTTCAGTTATGCTAATATTTCTCCTGACATGTTTAAGCCCAT 1186
Query 1202 CATACTCAATTGCCACAAACTCCAGGTGTTCTGGGCCCTTGATTCAATATGTGATGAAGG 1261
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1187 CATACTCAATTGCCACAAACTCCAGGTGTTCTGGGCTCTTGACTCAATATGTGATGAAGG 1246
Query 1262 ACTACAGGCAGTTGCAGCCACTTGCAAGGAACTCCGTGAACTCAGGATCTTCCCTTTTGA 1321
||||||||||||||| || |||||||||||||||||||||||| | ||||||||||||||
Sbjct 1247 ACTACAGGCAGTTGCTGCAACTTGCAAGGAACTCCGTGAACTCCGAATCTTCCCTTTTGA 1306
Query 1322 TCCTCGGGAAGACAGTGAAGGTCCTGTCTCTGAATTAGGCCTCCAAGCAATCTCCGAGGG 1381
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1307 TCCTCGGGAAGACAGTGAAGGTCCCGTCTCTGAATTAGGCCTCCAAGCAATCTCTGAGGG 1366
Query 1382 TTGTAGGAAACTAGAATCTATTCTCTACTTTTGCCAGCGCATGACTAATGCCGCTGTGAT 1441
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1367 TTGTAGGAAACTAGAATCTATTCTCTACTTTTGCCAGCGCATGACTAATGCTGCCGTGAT 1426
Query 1442 AGCCATGTCAGAGAACTGTCCAGAGCTTACTGTGTTTAGGCTGTGCATAATGGGTCGACA 1501
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1427 AGCCATGTCAGAAAACTGTCCTGAGCTTACTGTGTTTAGGCTGTGCATAATGGGTCGACA 1486
Query 1502 TAGGCCTGACCATGTAACAGGAAAGCCTATGGACGAGGGATTTGGTGCCATTGTTAAAAA 1561
||||||||||||||| ||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct 1487 TAGGCCTGACCATGTGACAGGGAAGCCTATGGACGAGGGTTTTGGTGCTATTGTTAAAAA 1546
Query 1562 CTGCAAGAAGCTAACTCGCCTTGCAGTGTCGGGATTGCTGACAGATCAAGCTTTTAGGTA 1621
||||||||||||||| || ||||||||||| || ||||||||||||||||||||||||||
Sbjct 1547 CTGCAAGAAGCTAACCCGACTTGCAGTGTCAGGCTTGCTGACAGATCAAGCTTTTAGGTA 1606
Query 1622 TATGGGTGAGTATGGGAAATTGGTCCGTACGCTTTCAGTAGCTTTTGCAGGGGACAGTGA 1681
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1607 TATGGGTGAGTATGGGAAATTGGTCCGTACGCTTTCAGTAGCTTTTGCTGGGGATAGTGA 1666
Query 1682 CATGGCTCTGAGACATGTCCTAGAAGGTTGCCCTAGACTGCAGAAACTTGAGATAAGGGA 1741
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1667 CATGGCTCTGAGACATGTCCTTGAAGGTTGCCCTAGACTGCAAAAACTTGAGATAAGGGA 1726
Query 1742 CAGTCCCTTTGGAGATGTTGCATTACGGTCTGGTATGCATCGCTATTACAACATGAGGTT 1801
|||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 1727 CAGTCCGTTTGGAGATGTTGCGTTACGCTCTGGTATGCATCGTTATTACAACATGAGGTT 1786
Query 1802 TGTTTGGATGTCAGCATGTAGCTTGTCTAAGGGATGCTGCAAGGATATTGCACGAGCAAT 1861
|||||||||||| |||||||||||||| |||||||||||||||||||||||||| | ||
Sbjct 1787 TGTTTGGATGTCGGCATGTAGCTTGTCAAAGGGATGCTGCAAGGATATTGCACGCGTGAT 1846
Query 1862 GCCGAATCTAGTTGTGGAAGTAATTGGATCGGATGATGATGATGACAATAGGGATTATGT 1921
||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 1847 GCCGAATCTAGTTGTGGAAGTAATTGGGTCAGATGATGATGACGACAATAGGGATTATGT 1906
Query 1922 CGAGACTTTATACATGTATCGGTCTCTTGATGGTCCAAGGAATGATGCACCAAAGTTCGT 1981
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1907 TGAGACTTTATACATGTATCGGTCTCTTGATGGTCCAAGAAATGATGCACCAAAGTTCGT 1966
Query 1982 CACGATTTTATAGAACGAGGAGCATTTCCGTGTTTCCGTTTTTTAAGACGGGAA-TGAAA 2040
|||||||||||||||||||| ||||||||||||| ||| ||||||||| ||| | |||||
Sbjct 1967 CACGATTTTATAGAACGAGGTGCATTTCCGTGTTACCGATTTTTAAGAAGGGGAGTGAAA 2026
Query 2041 TGGGTAAGTGTAGGAAGCTCA---GATGATGATG--G-TGGTGGCATCAGAGGCACACTA 2094
|||||| |||||||| ||||| |||||||||| | ||||| ||||||||||||||||
Sbjct 2027 TGGGTAGGTGTAGGAGGCTCAAATGATGATGATGATGATGGTGTCATCAGAGGCACACTA 2086
Query 2095 CATGATTGTTGATGATGAA-TGATGGTGGT--TGGGACTTGGGAGGAATGCAAGATTGTT 2151
||||||||||| |||||| ||||| || | ||| ||||||||||||||||||||||
Sbjct 2087 CATGATTGTTGTTGATGATGTGATGATGATGATGG---TTGGGAGGAATGCAAGATTGTT 2143
Query 2152 GTATCATTAttttctttttttatttttGGGTTCAAAAGATGTTATTTGGGTGGTTAGGTG 2211
|||||||||||||||||||| ||||||||||| ||||||| |||||||| ||||||||||
Sbjct 2144 GTATCATTATTTTCTTTTTT-ATTTTTGGGTTTAAAAGATCTTATTTGGTTGGTTAGGTG 2202
Query 2212 GAACAGTGGATGTATGTTTTGGGAGCATCGGTGTTAGTTAGACAGCTGAGTTGGTTCTAA 2271
||||| ||||||||||||||||||| | | ||||||||| | | | | ||||
Sbjct 2203 GAACAATGGATGTATGTTTTGGGAGAAACAGTGTTAGTT-G---G-T---T-----CTAA 2249
Query 2272 TAAGCTGCACTTTTGGCTCTCTCTAGTTGTTGTTGTTGAGAAACTAATGAGACATCTCTC 2331
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2250 TAAGCTGCACTTTTGGCTCTCTCTAGTTGTTGTTGTTGAGAAACTAATGAGACATTTCTC 2309
Query 2332 T 2332
|
Sbjct 2310 T 2310
> Ahg492408 jgi|Araly1|492408|fgenesh2_kg.7__1841__AT4G24390.1
Length=2433
Score = 1471 bits (796), Expect = 0.0
Identities = 1441/1746 (83%), Gaps = 70/1746 (4%)
Strand=Plus/Plus
Query 291 CATGTTCTCGAAAACGTACTT-GAGAACGTTCTTCAGTTCCTAGA-TTCAAGATGTGACC 348
||||| ||||| ||||| || |||||||| ||||||||||| | ||| ||||| || |
Sbjct 213 CATGTCCTCGAGAACGT-GTTAGAGAACGTGCTTCAGTTCCT-CACTTCCAGATGCGATC 270
Query 349 GTAACGCTGCTTC-TCTAGTTTGCAAATCTTGGTGGCGTGTTGAAGCTTTGACTCGA-TC 406
| ||||| | ||| | | || |||||||| |||| || || || ||| ||| ||| ||
Sbjct 271 GCAACGCCGTTTCAT-TGGTCTGCAAATCGTGGTATCGCGTCGAGGCTCAGACCCGATTC 329
Query 407 TGAGGTTTTTATTGGTAACTGTTACGCTCTTTCTCCGGCGAGGTTGACTCAGAGATTCAA 466
||||||||||| |||||||||||| |||||||||| || || | ||||| | |||||
Sbjct 330 -GAGGTTTTTATCGGTAACTGTTACTCTCTTTCTCCTGCTCGGCTCACTCACCGGTTCAA 388
Query 467 GCGTGTTAGGTCTCTTGTGCTGAAAGGGAAACCTAGGTTTGCTGATTTCAATCTCATGCC 526
|||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 389 GCGTCTTAGGTCTCTTGTGCTTAAAGGGAAACCTAGGTTTGCTGATTTTAATCTCATGCC 448
Query 527 TCCTGATTGGGGTGCT-AATTTTGCTCCTTGGGTTTCTACTATGGCTCAA-GCTTATCCT 584
|||| ||||||| ||| || || || ||||||||| || | | ||| || |||||||||
Sbjct 449 TCCTAATTGGGGAGCTCAA-TTCGCGCCTTGGGTTGCTGCAACAGCT-AAGGCTTATCCT 506
Query 585 TGTCTTGAGAAAGTTGATTTGAAGAGGATGTTTGTTACTGATGATGATTTAGCTCTTCTT 644
|| |||||||| ||| |||||||| | ||||||||||| |||||||||||||||||||||
Sbjct 507 TGGCTTGAGAAGGTTCATTTGAAGCGTATGTTTGTTACGGATGATGATTTAGCTCTTCTT 566
Query 645 GCTGACTCTTTTCCTGGGTTTAAAGAGCTTATC-TTGGTTTGTTGTGAAGGTTTTGGTAC 703
||||| || ||||||||||| |||||||||| | ||||| || || ||||||||||| ||
Sbjct 567 GCTGAGTCGTTTCCTGGGTTCAAAGAGCTTA-CTTTGGTCTGCTGCGAAGGTTTTGGGAC 625
Query 704 TAGTGGTATCT-CTATTGTTGCCAACAAGTGCAGAAAGCTGAAA-GTGCTTGATTTGATT 761
||||||||| | || ||||||||||||| |||||| |||| ||| || |||||| || |
Sbjct 626 TAGTGGTAT-TGCTGTTGTTGCCAACAAATGCAGACAGCT-AAAGGTTCTTGATCTGGTG 683
Query 762 GAGTCTGAGGTCACGGATGATGAAGTGGATTGGATCTCTTGTTTCCCTGAGGATGTAA-C 820
||||| || ||||| |||||||| ||||||||||| |||||||| |||| || || || |
Sbjct 684 GAGTCAGAAGTCACCGATGATGAGGTGGATTGGATTTCTTGTTTTCCTGTGGGTG-AATC 742
Query 821 TTGTTTGGAGTCTTTAG-CTTTTGACTGTGTGGAAGCTCCTATCAATTTTAAGGCGC-TT 878
| | |||||||||| | ||||||||||||| ||| | ||||||||||| || ||| ||
Sbjct 743 TCCTCTGGAGTCTTT-GTCTTTTGACTGTGTTGAATCCCCTATCAATTTCAA--CGCATT 799
Query 879 -GAGGGTCTTGTTGCTAGGTCACCGTTCTTGAAGAAACTTAGGCTAAACAGGTTTGTGTC 937
||||| || || | ||||||||||||||||||||| ||||| | ||||||||||| ||
Sbjct 800 GGAGGGGCTCGTGGTTAGGTCACCGTTCTTGAAGAAGCTTAGACCCAACAGGTTTGTTTC 859
Query 938 TCTTGTGGAGCTACATCGTCTGCTACTTGGAGCTCCACAGCTT-ACTAGTCTTGGGACTG 996
|||| ||||| ||||| || | || |||| || ||| || || |||||||| || |
Sbjct 860 CCTTGAAGAGCTGCATCGACTAATGGTTCGAGCGCCGCAG-TTAACCAGTCTTGGTACGG 918
Query 997 GTTCATTTAG-CCATGATGAGGAACCTCAGAGTGAGCAAGAACCAGATTATGCTGCTGCA 1055
|||||||||| || || | | |||||| |||| ||| ||| |||||||| |||||
Sbjct 919 GTTCATTTAGTCC-CGACAACGCGCCTCAGGGTGAACAACTACCGGATTATGCAGCTGC- 976
Query 1056 TTT-CGTGCTTGTAAATCTGTAGTTTGCT-TGTCAGGGTTTAGAGAGTTGATGCCGGAGT 1113
||| | |||||||||||| ||||||| | | ||||| || || || || | ||| || |
Sbjct 977 TTTCCTTGCTTGTAAATCCATAGTTTG-TCTCTCAGGATTCAGGGAATTCAGGCCTGAAT 1035
Query 1114 ATCTTCC-AGCTATCTTTCCGGTGTGCGCTAATCTCACCTCCCTGAACTTCAGTTATGCT 1172
| | ||| |||||||| ||| || || |||||||||||||| || |||||||||||||||
Sbjct 1036 A-CCTCCTAGCTATCTCTCCAGTTTGTGCTAATCTCACCTCTCTTAACTTCAGTTATGCT 1094
Query 1173 AACATTTCTCCTGACATGTTCAAGCCCATCATACTCAATTGCCACAA-ACTCCAGGTGTT 1231
|||||||||||| ||||| ||| ||||||||||| ||| || ||||| | |||| || ||
Sbjct 1095 AACATTTCTCCTCACATGCTCATGCCCATCATACGCAACTGTCACAATA-TCCAAGTCTT 1153
Query 1232 CTGGGCCCTTGATTCAATATGTGATGAAGGACTACAGGCAGTTGCAGCCACTTGCAAGGA 1291
|||||| ||||| || ||| | |||||||||||||||||||| || ||||| ||||||||
Sbjct 1154 CTGGGCTCTTGACTCGATACGCGATGAAGGACTACAGGCAGTGGCTGCCACATGCAAGGA 1213
Query 1292 ACTCCGTGAAC-TCAGGATCTTCCCTTTTGATCCTCGGGAAGACAGTGAAGGTCCTGTCT 1350
|||||||| | || |||| |||||||| |||||||| |||||||| |||||||||||||
Sbjct 1214 GCTCCGTGAGCTTC-GGATTTTCCCTTTCGATCCTCGTGAAGACAGCGAAGGTCCTGTCT 1272
Query 1351 CTGAATTAGGCCTCCAAGCAATCTCCGAGGGTTGTAGGAAACTAGAATCTATTCTCTACT 1410
| | | ||||||| |||||||| || ||||| |||||||||||||||||||| || ||||
Sbjct 1273 CAGGAGTAGGCCTGCAAGCAATATCAGAGGGATGTAGGAAACTAGAATCTATCCTGTACT 1332
Query 1411 TTTGCCAGCGCATGACTAATGCCGCTGTGATAGCCATGTCAGAGAACTGTCCAG-AGCTT 1469
|||||||||| |||||||||| ||||||| ||||||||| |||||||| || | |||||
Sbjct 1333 TTTGCCAGCGGATGACTAATGGAGCTGTGACAGCCATGTCTGAGAACTG-CCCGCAGCTT 1391
Query 1470 ACTGTGTTTAGGCTGTGCATAATGGGTCGACATAGGCCTGACCATGTAACAGGAAAGCCT 1529
|||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||
Sbjct 1392 ACTGTGTTTAGGCTTTGCATAATGGGTCGCCATAGGCCTGACCACGTGACAGGAAAGCCA 1451
Query 1530 ATGGACGAGGGATTTGGTGCCATTGTTAAAAACTGCAAGAAGCTAACTCGCCTTGCAGTG 1589
|||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1452 ATGGACGATGGATTTGGTGCCATTGTTAAAAACTGCAAGAAGCTAACCCGACTTGCAGTG 1511
Query 1590 TC-GGGATTGCTGACAGATCAAGCTTTTAGGTATATGGGTGAGTATGGGAAATTGGTCCG 1648
|| ||| || || |||||| |||||||||| ||||| || || |||||||||||| ||||
Sbjct 1512 TCAGGG-TTACTAACAGATGAAGCTTTTAGCTATATAGGAGAATATGGGAAATTGATCCG 1570
Query 1649 TACGCTT-TCAGTAGCTTTTGCAGGGGACAGTGACATGGCTCTGAGACATGTCCTAGAAG 1707
||| || || ||||||||||| ||| ||||||||| |||||||||| |||| || || |
Sbjct 1571 CACG-TTATCTGTAGCTTTTGCTGGGAACAGTGACAAGGCTCTGAGATATGTTCTTGAGG 1629
Query 1708 GTTGCCCTAGACTGCAGAAA-CTTGAGATAAGGGACAGTCCCTTTGGAGATGTTGCATTA 1766
|||| |||| ||| || ||| ||||| || ||||||||||||||||| |||| || |||
Sbjct 1630 GTTGTCCTAAACTACA-AAAGCTTGAAATCAGGGACAGTCCCTTTGGGGATGCTGGATTG 1688
Query 1767 CGGTCTGGTATGCATCGCTATTACAACATGAGGTTTGTTTGGATGTCAG-CATGTAG-CT 1824
|| |||||||||||||| |||| ||||||||||||||||||| |||| | ||||| | ||
Sbjct 1689 CGCTCTGGTATGCATCGGTATTGCAACATGAGGTTTGTTTGGTTGTC-GTCATGT-GTCT 1746
Query 1825 TGTCTAAGGGATGCTGCAAGGATATTGCACGAG-CAATGCCGAATCTAGTTGTGGAAGTA 1883
| || |||| |||||| |||| |||| | || | |||| ||| |||| |||||||||
Sbjct 1747 TATCGCTGGGAGGCTGCAGGGATGTTGCTC-AGGCTCTGCCTAATGTAGTGGTGGAAGTA 1805
Query 1884 ATTGGATCGGATGATGATGATGAC-A--A---T---A--GGG-ATTATGTCGAGACTTTA 1931
||||||| |||| |||||||||| | | | | ||| ||||||| ||||| ||
Sbjct 1806 TTTGGATCAGATGGTGATGATGACGACGACACTGTCACTGGGGATTATGTTGAGACATTG 1865
Query 1932 TACATGTATCGGTCTCTTGATGGTCCAAGGAATGATGCACCAAAGTTCGTCACGATTTTA 1991
||| |||||||||| |||||||| |||||||| | || |||||||| || || ||||||
Sbjct 1866 TACTTGTATCGGTCCCTTGATGGCCCAAGGAA--A-GCTCCAAAGTTTGTAACAATTTTA 1922
Query 1992 T-AGAA 1996
| ||||
Sbjct 1923 TGAGAA 1928
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92330753880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5