BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50000.1
Length=1509
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949514 jgi|Araly1|949514|scaffold_801401.1 1978 0.0
> Ahg949514 jgi|Araly1|949514|scaffold_801401.1
Length=1198
Score = 1978 bits (1071), Expect = 0.0
Identities = 1131/1161 (97%), Gaps = 0/1161 (0%)
Strand=Plus/Plus
Query 97 GACAATGAAAGAAGGAAAGGATGGGTTTGTTCGAGCAGATCAGATTGATCTAAAAAGCTT 156
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 17 GACAATGAAAGAAGGAAACGATGGTTTTGTTCGAGCAGATCAGATTGATCTAAAAAGCTT 76
Query 157 AGACGAGCAACTAGAGAGACACTTAAGCAGAGCTTTGACTTTagagaagaacaagaagaa 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 AGACGAGCAACTAGAGAGACACTTAAGCAGAGCTTTGACTTTAGAGAAGAACAAGAAGAA 136
Query 217 agatgaagaagaCACAACCGCCGTCGCCATCGGTGGCTCTGCTTCTTCTTCCCCTGTCAC 276
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 137 AGATGAAGAAGAAACAACCGCCGTCGCCATCGGTGGCTCTGCTTCTTCTTCCCCCGTCAC 196
Query 277 TCTAAACGGCGGCGGATTTGTTGGCAAGAGGAAACAGAGACTTGAGTGGGAGATCGATCC 336
|||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 197 TCTAAACGGCGGTGGATTTGTAGGGAAGAGGAAACAGAGACTTGAGTGGGAGATCGATCC 256
Query 337 TTCTAAACTTATCATCAAGACTGTTCTTGCTCGTGGCACTTTTGGTACCGTTCATCGTGG 396
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 257 TTCTAAACTTATCATCAAGACTGTTCTTGCACGTGGCACTTTTGGTACCGTTCATCGTGG 316
Query 397 TATCTACGACGGTCAAGATGTTGCCGTGAAGTTGCTTGATTGGGGTGAAGAAGGTCATAG 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 TATCTACGACGGTCAAGATGTTGCCGTGAAGTTGCTTGATTGGGGTGAAGAAGGTCATAG 376
Query 457 ATCAGAAGCTGAGATTGTGTCTTTGAGAGCTGATTTTGCTCAGGAGGTTGCTGTTTGGCA 516
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 GTCAGAAGCTGAGATTGTGTCTTTGAGAGCTGATTTTGCTCAGGAGGTTGCTGTTTGGCA 436
Query 517 TAAATTGGATCATCCTAATGTCACCAAGTTTATAGGAGCAACAATGGGTGCATCAGGGTT 576
||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| ||
Sbjct 437 TAAATTGGATCATCCTAATGTTACTAAGTTTATAGGAGCTACAATGGGTGCATCAGGTTT 496
Query 577 ACAGTTGCAAACAGAGAGTGGTCCATTAGCTATGCCAAACAATATATGTTGTGTTGTTGT 636
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 497 ACAGTTGCAGACAGAGAGTGGTCCATTAGCAATGCCAAACAATATATGTTGTGTTGTTGT 556
Query 637 TGAATATCTTCCAGGTGGTGCTTTAAAATCTTACCTGATCAAGAACAGAAGAAGAAAACT 696
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 557 TGAATATCTTCCAGGTGGTGCTTTAAAATCTTACCTGATCAAGAACAGAAGAAGAAAATT 616
Query 697 AACATTTAAAATTGTTGTTCAGCTCGCTCTTGATCTCGCTAGAGGGTTGAGTTACCTTCA 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 AACATTTAAAATTGTTGTTCAGCTCGCTCTTGATCTCGCTAGAGGGTTGAGTTACCTTCA 676
Query 757 TTCGCAGAAGATTGTTCACCGAGATGTAAAGACAGAGAATATGTTGTTAGACAAAACCCG 816
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 677 TTCGCAGAAGATTGTTCACCGAGATGTAAAGACAGAGAACATGTTGTTAGACAAAACCCG 736
Query 817 GACTGTTAAAATCGCAGATTTTGGAGTTGCGAGAGTTGAAGCATCTAACCCTAATGACAT 876
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 GACTGTTAAAATTGCGGATTTTGGAGTTGCGAGAGTTGAAGCATCTAACCCTAATGACAT 796
Query 877 GACAGGAGAGACTGGCACACTTGGCTACATGGCGCCTGAGGTTCTCAATGGAAACCCGTA 936
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 797 GACAGGAGAGACTGGCACCCTTGGCTACATGGCTCCTGAGGTTCTCAATGGAAACCCGTA 856
Query 937 TAATCGAAAATGCGATGTATACAGTTTCGGGATCTGCTTATGGGAGATATATTGCTGTGA 996
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 TAACCGAAAATGCGATGTATACAGTTTCGGGATCTGCTTATGGGAGATATATTGCTGTGA 916
Query 997 CATGCCATACCCTGACCTTACTTTCTCTGAGGTCACTTCAGCCGTCGTCCGCCAGAACCT 1056
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 917 CATGCCATACCCTGACCTTACTTTCTCTGAGGTCACTTCAGCCGTCGTCCGCCAGAACTT 976
Query 1057 GAGACCCGATATACCGAGGTGTTGCCCGAGCGCACTTGCAGCTGTGATGAAGCGATGTTG 1116
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 977 GAGACCCGATATACCGAGGTGTTGCCCGAGCGCACTTGCAGCAGTGATGAAGCGATGTTG 1036
Query 1117 GGATGCAAATCCGGACAAGAGACCGGAGATGGATGAGGTTGTACCAATGTTGGAGAGTAT 1176
|||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1037 GGATGCAAATCCAGACAAGAGACCGGAGATGGACGAGGTTGTACCGATGTTGGAGAGTAT 1096
Query 1177 TGACACAACCAAGGGAGGAGGGATGATTCCTAACGACCAGCAACAGGGTTGCCTATGCTT 1236
||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 1097 TGACACAACCAAGGGAGGAGGGATGATCCCTAACGACCAGCAGCAGGGTTGCCTCTGCTT 1156
Query 1237 CCGAAGGAAACGTGGTCCTTA 1257
|||||||||||||||||||||
Sbjct 1157 CCGAAGGAAACGTGGTCCTTA 1177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56487833335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5