BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50012.1
Length=1858
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495057 jgi|Araly1|495057|fgenesh2_kg.8__873__AT5G50011.1 1703 0.0
> Ahg495057 jgi|Araly1|495057|fgenesh2_kg.8__873__AT5G50011.1
Length=1590
Score = 1703 bits (922), Expect = 0.0
Identities = 1350/1541 (88%), Gaps = 91/1541 (6%)
Strand=Plus/Plus
Query 121 CAAAGCAACAGCATGCGGTGGTGGTTGTGTCTTTCTGCTTATGTTTTTCGTACAGTAGTA 180
|||||||| | |||||||||||||||| ||||||||||||||||||||||||| | ||
Sbjct 1 CAAAGCAATAACATGCGGTGGTGGTTGAGTCTTTCTGCTTATGTTTTTCGTAC---ACTA 57
Query 181 GTCTTCTGTCGTGTGATTCTGTAAACTGCGATCTTACTTCAGACATAG--C----T-TTT 233
|||||||||||||||||||||||||||| |||||| ||| ||||| || | | |||
Sbjct 58 GTCTTCTGTCGTGTGATTCTGTAAACTGAGATCTTGCTTTAGACACAGCTCTTTTTCTTT 117
Query 234 -T-TATGTAAT--GG-GGTCGTCTTTTTTCTTCACATTCCCTTACTTTGTCCGCCAAATT 288
| | |||||| || |||| ||||||||||||||| ||| || ||||||||||||||||
Sbjct 118 GTGTGTGTAATGGGGTGGTCTTCTTTTTTCTTCACAGTCCATTGCTTTGTCCGCCAAATT 177
Query 289 ATTT-A-AGACTTCGTTTGGATACTCTGTTTTGGGAGAAGGAATCAGTTGGGGAGAAAGT 346
|||| | | || || ||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 178 ATTTGAGATAC-TCTTTTGGATACTCTGTTTT-GG-TAAGGAATCAGTTGGTGAGAAAGT 234
Query 347 AGTTATGGTTTGTCAATCAGCGGGACAGACAAGATTTCGTACACTCAAACACGAACACGG 406
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 235 AGTTATGGTTTGTCAATCAGCGGGACAGACAAGATTTCGAACACTCAAACACGAACACGG 294
Query 407 TATCACAGGAAACATTGTAGTTAGAGTCATTGCATGCTTTCAACCTCTCCAAGATTGCCA 466
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TATCTCAGGAAACATAGTAGTTAGAGTCATTGCATGCTTTCAACCTCTCCAAGATTGCCA 354
Query 467 GGCTGAATATTTCCGTCAATTGTTGAAGCCCGTCACGTAGAGTAGCTCGATACTTATCGT 526
|||||||||||| |||||||||||||||||||||||||||||||||| |||| || || |
Sbjct 355 GGCTGAATATTTTCGTCAATTGTTGAAGCCCGTCACGTAGAGTAGCTGGATATTTCTCCT 414
Query 527 TCTTGTTTCAAGCC-TAGTTTCTTCTATCCATTTAGTTGTTGATTTGTTTAGTGTTGGAT 585
|||| ||||||||| ||||||||| | | ||| | || |||||||||||||||||||||
Sbjct 415 TCTTATTTCAAGCCTTAGTTTCTT-TTTTTATTCATTTATTGATTTGTTTAGTGTTGGAT 473
Query 586 GGGACAAGATCGTGGGTTTG-GGTTTCCTACTCAGCGCTTGTGTTCCTTGTCTTCCCTAG 644
||||||||||||| |||||| ||||||||| |||||| ||| | || ||| ||||||||
Sbjct 474 GGGACAAGATCGT-GGTTTGTGGTTTCCTAGTCAGCGGTTGAGCTCATTGACTTCCCTAC 532
Query 645 CTCTGTCTCATCTCGGGAAGCAAGACTTGAATTTAGTATCTAAAACCTGCGGCGACACCA 704
||||||||||||||||||| ||||||||| | ||| | ||| | |
Sbjct 533 CTCTGTCTCATCTCGGGAATCAAGACTTG-----A--ATC-----CATGC-G-G------ 572
Query 705 CCGACATGTTTTCTACTCGTGGATCTTATCAAGTTTCTACCCAAGTCTCTCAATCCTATT 764
||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 573 -CGACATGTTTTCTACTCGTGGATCTTATCAAGTTTCT-----A----CTCAATCCTATT 622
Query 765 TTGATGGGTATTGTGGATGGGTTCATGGGTCATCCCACCTACAGCAGCAGTTCTTGCCTC 824
||||||| | || ||| ||||||||||| |||||||| | |||||||||||||||||||
Sbjct 623 TTGATGGCTCTTATGGTTGGGTTCATGGACCATCCCACTTGCAGCAGCAGTTCTTGCCTC 682
Query 825 CTCAAAACCAATGTATGAAGCAAGTACCTCTTCAAGTAGACGGTGTTATATCTAAAGCTG 884
||| ||| ||||||||||||| ||||||||| ||||||||||| |||||||||||||||
Sbjct 683 CTCTAAATAAATGTATGAAGCATGTACCTCTTAAAGTAGACGGTTTTATATCTAAAGCTG 742
Query 885 A--G-GAACAATGTAGTCAGAAGAGGTTCCTAGTGTTTGATCAGTCTGGAGATCAGACGA 941
| | | ||||||||||||||||||||||| ||||||||||||||||| |||| |||||
Sbjct 743 ATGGCGGTCAATGTAGTCAGAAGAGGTTCCTTGTGTTTGATCAGTCTGGTGATCCGACGA 802
Query 942 CTTTGCTACTCGCTTCCGATATACGGAAATCTTTTGAGACCCTAAAACAGCATGCCTGTC 1001
|| |||| | |||||||||| |||||||||||||||||||| ||||||| || |||||
Sbjct 803 CTCTGCTTGTTACTTCCGATATCCGGAAATCTTTTGAGACCCTGAAACAGCCTGTCTGTC 862
Query 1002 CTGATATGAAGGAAGAGCTCCAAAGAAGCAACAAAGATTTGTTTGTTTGTCACGGAATGC 1061
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 863 CTGATATGAAGGAAGAAATCCAAAGAAGCAACAAAGATTTGTTTGTTTGTCAAGGAATGC 922
Query 1062 AAGGAAATAGCGAACCGGATTTGAAGGAGGATTCGGAAGAACTAAATGCAT-TGCTTTAC 1120
| |||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||
Sbjct 923 ATGGAAATAGCGAACCGGATTTGAAGGAGGATACGGAAGAACTAAATGC-TCTGCTTTAC 981
Query 1121 TCTGAAGATGAGAGTGGTTATTGCTCTGAAGAAGATGAGGTTACAAGCGCAGACCATTCC 1180
|| |||| |||||||| |||||| |||||||||||||||||||||||| |||||||||||
Sbjct 982 TCGGAAGGTGAGAGTGATTATTGTTCTGAAGAAGATGAGGTTACAAGCTCAGACCATTCC 1041
Query 1181 CCAAGCATTGTAGTATCAGGCCGTGAGGACCAAAAAACATTTCTTGGAAGCTATGGACAA 1240
||||||||||||||||||| || ||||| ||||||| |||||||||||||||||||||||
Sbjct 1042 CCAAGCATTGTAGTATCAGCCCATGAGGGCCAAAAAGCATTTCTTGGAAGCTATGGACAA 1101
Query 1241 CCATTAAATGCTAAAAAGAGAAAGATACTCGAAACCTCGAATGAGAGTATGCGGGACGCT 1300
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1102 TCATTAAATGCTAAAAAGAGAAAGACACTCGAAACCTCGAATGAGAATATGCGGGACGCT 1161
Query 1301 GAATCGAGCTGTGGTAGTTGTGACAA---CA-CA-AGG-ATTAGTTTTCTGAAA-CGTTC 1353
|||||||||||||||||||||||||| || || ||| |||||||| || ||| |||||
Sbjct 1162 GAATCGAGCTGTGGTAGTTGTGACAATGACAACACAGGGATTAGTTT-CTTAAAACGTTC 1220
Query 1354 TAAG-CTGTCTAGTAACAAGATAGGAGAAGAGAAGATATTTGAGACTGTAAGCCTCTTGC 1412
||| | |||||| || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1221 AAAGAC-GTCTAGCAAGAAGATAGGAGAAGAGAAGATATTTGAGACTGTAAGCCTTTTGC 1279
Query 1413 GCAGTGTAGTCCCCGGGGAGGAACTGGTGGACCCGATCTTAGTCATCGATAGAGCCATTG 1472
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1280 GCAGTATAGTCCCCGGGGAGGAACTGGCGGACCCGATCTTAGTCATCGATAGAGCCATTG 1339
Query 1473 ATTACCTTAAATCATTGAAGATGGAAG-CGAAAAATCGAGAAGCATGAGGT-TCTTTGTT 1530
||||||| ||||||||||||||||||| | |||||||||| | |||| || ||||||||
Sbjct 1340 ATTACCTGAAATCATTGAAGATGGAAGTC-AAAAATCGAGGA-CATG-GGACTCTTTGTT 1396
Query 1531 TGTAGGATACCTAAGACATATTAGCATTGGCAAGTGGACTTGGTTTCTAAACAAAGTAGT 1590
|| | |||| | | || || | | |||||||| |||||||||||||||||
Sbjct 1397 TGCATGATA--T----C-TA--AG-A--G-----TGGACTTGTTTTCTAAACAAAGTAGT 1439
Query 1591 AGACATATTGGACCGTGGTACTCTTGTCAAGCTACAAAGGG 1631
|||||||||||||| ||||||||||||||||||||||||||
Sbjct 1440 AGACATATTGGACCATGGTACTCTTGTCAAGCTACAAAGGG 1480
Score = 119 bits (64), Expect = 8e-26
Identities = 102/119 (86%), Gaps = 8/119 (7%)
Strand=Plus/Plus
Query 1674 GGAGTTGCAAGAGAAGGAATTGATATTAAAATGCAAATTGAATATTTCATATTAGTTGAT 1733
|||||||| ||||||||||| | ||||| |||||||||| | | | || || ||||||
Sbjct 1480 GGAGTTGCGAGAGAAGGAATCG-GATTAATATGCAAATTG-A-A--T-AT-TT-GTTGAT 1531
Query 1734 GATTAAGATGGATTGCGAAATTTTAATTTCAGTCGTTTAGCTGTTTGTTATATCATGTA 1792
||||||| ||||||| ||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1532 GATTAAGCTGGATTGATAAATTTTTATTTTAGTCGTTTAGCTGTTTGTTATATCATGTA 1590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69781328840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5