BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50020.2
Length=1578
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495060 jgi|Araly1|495060|fgenesh2_kg.8__876__AT5G50020.1 2202 0.0
> Ahg495060 jgi|Araly1|495060|fgenesh2_kg.8__876__AT5G50020.1
Length=1709
Score = 2202 bits (1192), Expect = 0.0
Identities = 1397/1490 (94%), Gaps = 38/1490 (3%)
Strand=Plus/Plus
Query 99 AGAGAGTGTAGCGAGGAGT-G--TCTGATCCGTTCGCTGATTCTAATGGCTG-GACGGGT 154
||||||||||||||||||| | ||||||||||||||||||||||||||| | |||||||
Sbjct 124 AGAGAGTGTAGCGAGGAGTAGTCTCTGATCCGTTCGCTGATTCTAATGGC-GAGACGGGT 182
Query 155 CTTCGAAGCCTGGAAGGGAAGTAATAAGTTTCTGTTTGGTGGGAGATTGATATTTGGGCC 214
||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||
Sbjct 183 CTTCGAAGCCTGGAAGGGAAGTAATAAGTTTTTATTTGGTGGGAGATTGATTTTTGGGCC 242
Query 215 AGATGCTTGGTCTATTCCTTTTACCTTCCTGCTCATCATAACTCCCGTTTGTTTCTTTTC 274
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 243 TGATGCTTGGTCTATTCCTTTTACCTTCCTGCTCATCATAACTCCAGTTTGTTTCTTTTC 302
Query 275 TGTATTTGTTGCAACACATCTTCGCCGCGAGCTCTTACCAAACAATGCGGGACATGTGTT 334
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 303 TGTATTTGTTGCAACACATCTTCGCCGCGAGCTCTTACCAAACAATGCCGGACATGTGTT 362
Query 335 CTTAGTGGCAGGAGTTCTATTTACTGTCTTTGTACTGATCCTTCTCTTCCTCACTTCTGC 394
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 CTTAGTGGCAGGAGTCCTATTTACTGTCTTTGTACTGATCCTTCTCTTCCTCACTTCTGC 422
Query 395 GCGGGATCCTGGAATCGTTCCAAGAAATTCGCATCCGCCAGAGGAAGAACTATGCTATGA 454
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 423 GCGGGATCCTGGAATCGTTCCAAGAAATTCACATCCGCCAGAGGAAGAACTATGCTATGA 482
Query 455 TACAACTGTATCAAGTGATGGAAGACAAACACCCACTGTTCAAATTCCTAGGACGAAGGA 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 TACAACTGTATCAAGTGATGGAAGACAAACACCCACTGTTCAAATTCCTAGGACGAAGGA 542
Query 515 AGTCATGGTTTATGGCGTTTCTGTTAGAGTTAAATATTGTGATACATGCATGCTTTATCG 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 AGTCATGGTTTATGGCGTTTCTGTTAGAGTTAAATATTGTGATACATGCATGCTTTATCG 602
Query 575 GCCTCCTCGATGCTCCCATTGTTCCATTTGCAACAACTGTGTTGAGCGCTTTGATCATCA 634
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 GCCTCCTCGTTGCTCCCATTGTTCCATTTGCAACAACTGTGTTGAGCGCTTTGATCATCA 662
Query 635 TTGCCCTTGGGTAGGCCAATGCATTGGAGTGAGAAACTATAGGTACTTCTTTATGTTTGT 694
| | ||| | || | ||||||||||||||||||||||||||||||
Sbjct 663 -------T---T--GCC----C-TT---G-GAGAAACTATAGGTACTTCTTTATGTTTGT 701
Query 695 TTCTTCGGCAACTATTCTCTGCATCTACATTTTTTCGATGTCGGCATTATACATCAAGGT 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 TTCTTCGGCAACTATTCTCTGCATCTACATTTTTTCGATGTCGGCATTATACATCAAGGT 761
Query 755 TCTGATGGATAACCATCAAGGTACTGTGTGGAGGGCAATGCGAGAATCACCCTGGGCGGT 814
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 TCTGATGGACAACCATCAAGGTACTGTGTGGAGGGCAATGCGAGAATCACCCTGGGCGGT 821
Query 815 TATGCTGATGATATATTGCTTTATTTCCCTGTGGTTTGTTGGAGGGCTTACTGGGTTTCA 874
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 822 TATGCTGATGATATATTGCTTTATTTCCCTTTGGTTTGTTGGAGGGCTTACTGGGTTTCA 881
Query 875 CTTGTACCTCATTAGCACAAACCAGACGACCTATGAGAATTTCCGGTACAGATCAGACAA 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 CTTGTACCTCATTAGCACAAACCAGACGACCTATGAGAATTTCCGGTACAGATCAGACAA 941
Query 935 TAGAATCAACGTTTATAACCGTGGGTGTTCAAACAAtttttttGAGACATTTTGCTCAAA 994
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 942 CAGAATCAACGTTTATAACCGTGGGTGTTCAAACAATTTTCTTGAGACATTTTGCTCAAA 1001
Query 995 AGTTAAACCCTCAAGGAATGACTTCAGAGCGTTCATCAAAGAAGAACCTCCAAGGAATAT 1054
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1002 AGTTAAACCCTCGAGGAATGACTTCAGAGCGTTCATCAAAGAAGAATCTCCAAGGAATAT 1061
Query 1055 TACATTGGCTACCACATGGGAACGACCAGAAGAAGCAGATGAAGAAAACAGGGAGGAACG 1114
||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 1062 TACATTGGCTACCACATGGGAACGACCGGAAGAAGCAGAGGAAGAAAATAGGGAGGAACG 1121
Query 1115 GCGCCAGAAGGTGGAAGACGATCTAGACATCGATGAAGATGTTATGAAACTGCAGCAGCG 1174
||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||
Sbjct 1122 GCGTCAGAAGGTGGAAGACGATCTAGACATCGATGAAGATGTTTTGAAACTCCAGCACCG 1181
Query 1175 TTTAAATGACGAAGAGGGCAGCGATACAGCGCATCACAAGATCGATATTGACCAAATGAG 1234
|||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1182 TTTACATGTTGAAGAGGGCAGCGATACAGGGCATCACAAGATCGATATTGACCAAATGAG 1241
Query 1235 AATCGGGTCTAATGAGAGAGCGCCAACAATTCGATCAGAAGCCAGGCATGGAAACTGGGG 1294
| | ||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||
Sbjct 1242 AGTTGGGTCTAATGAGAGAGCACCAACAATTCAATCAGAAGCCAGGCACGGAAACTGGGA 1301
Query 1295 AGCAAGAAGCAATGCACAGGAGGAGGACGTAATTGCTGGTTCTTCAGTAAGAGAAAGTAG 1354
| ||||| | |||| ||| ||||| || ||||||||||||||||||||||| ||||||||
Sbjct 1302 AACAAGACGTAATGTACAAGAGGACGATGTAATTGCTGGTTCTTCAGTAAGGGAAAGTAG 1361
Query 1355 AAGCTATGCAGCTGCAGAGGAGGGACGGTGAT-GAGTGAACGATGGTAGTA--G-GG-TA 1409
|||||||||||||||||||||||||||||||| || ||||| ||||||||| | || ||
Sbjct 1362 AAGCTATGCAGCTGCAGAGGAGGGACGGTGATTGA-TGAACTATGGTAGTAAAGAGGGTA 1420
Query 1410 attattttgaagcttttt-ctttcttactaagtttttattgttttcaatttttcattatt 1468
||| || |||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1421 ATTCTTATGAAGCTTTTCACTTTCTTACTAAGTTTT-ATTGTTTTCAATTTTTCATTATT 1479
Query 1469 ttgtgggtttggtttgatttgGGAGTTGTGAACACTATTTGTGAATAAGTTTAGTGTAAG 1528
|| |||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1480 TTACGGGTATGGTTCGATTTGGGAGTTGTGAACACTATCTGTGAATAAGTTTAGTGTAAG 1539
Query 1529 CTTGGGTAGAGGTCGAATTAAGTTATAAGTAATCAACTTTTTGAATGTTT 1578
| | ||| |||| ||||||||| ||| || ||||| ||||||||||||
Sbjct 1540 C--G--TAGGGGTCAAATTAAGTTTTAACTATTCAACGTTTTGAATGTTT 1585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59116060240
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5