BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50030.1
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949519 jgi|Araly1|949519|scaffold_801406.1 922 0.0
> Ahg949519 jgi|Araly1|949519|scaffold_801406.1
Length=607
Score = 922 bits (499), Expect = 0.0
Identities = 572/608 (94%), Gaps = 2/608 (0%)
Strand=Plus/Plus
Query 55 TAAAATATTTTTCCGGCGACGCAATGGCTTCTTACTCCGGTTGTTTCTTCGTCGTTACTT 114
||||| |||||||||||||| ||||||||||||||| ||||||||| ||||||||||||
Sbjct 1 TAAAACCTTTTTCCGGCGACGAAATGGCTTCTTACTCTGGTTGTTTCCTCGTCGTTACTT 60
Query 115 TGGCAGTTCTGTCACAATTTCTCTTAGCCCCAGCTTCAGCCTTGGTCAACAGGGAATACA 174
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 61 TGGCAGTTCTGTCACAATTTCTCTTAGCCCCAGCTTCAGCCTTGGTCAACAGAGAATTCA 120
Query 175 TCGATTCCAATTGCCAAAGAGTCAAAAACAAAGCC-TTCTGCATCCAAACTTTGACCACC 233
||||| ||||||||||| |||||||||||||| | |||||||||||||| |||||||||
Sbjct 121 TCGATGCCAATTGCCAACGAGTCAAAAACAAA-CAATTCTGCATCCAAACATTGACCACC 179
Query 234 TATCCTCCTGCCGCTGCTGCCACCGGCCTGTTACCATTGGCTGAGGCCGTGGTTGGCCTT 293
||||||||| |||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 180 TATCCTCCTACCGCTGCTGCCACCGGCCTGTTGCCATTGGCGGAGGCCGTGGTCGGCCTT 239
Query 294 GCAATATCCCACTGCGAGAAGACAGCTGGTTTCGCAGCAGAGACAGCCAAAAAGGACGCA 353
||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 240 GCAATATCCCATTGCGAGAAAACAGCCGGTTTCGCAGCCGAGACAGCCAAAAAGGACGCA 299
Query 354 ACATTGAAGACTCAGTTCAACGAGTGCCACGACGCCTATGTTGGTATTTTGGCGTCTCTA 413
||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 300 ACATTGAAGACGCAGTTCAATGAGTGCCACGACGCCTATGTTGGTATTTTGGCTTCTCTA 359
Query 414 AAGAGCGCTCTACTGGAACTCAAGGACTCACCAGACACTGCCAACTACGACGTCATGGTT 473
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAAAGCGCTCTATTGGAACTCAAGGACTCACCAGACACTGCCAACTACGACGTCATGGTT 419
Query 474 TCTGGCGATGATACAAGGCGTGTGAAGGGTTTGGTCGAGAAAAACACTGACACTGCTTCC 533
||||||||||| | ||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 420 TCTGGCGATGAAATAAGGCGTGTGAAGGGTTTGGTCGAGAAAAACACCGATACCGCTTCC 479
Query 534 AAGACGCTTATGGAGATGACACTGCAGATGGAGCAGCTTCTTGATCTCGCTGCTGGAGCC 593
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 480 AAGACGCTTATGGAGATGACATTGCAGATGGAGAAGCTTCTTGATCTCGCTGCTGGAGCC 539
Query 594 ACCGATGCTGCTGACGACGACGATGAGAACTTACATCGTCGTGCTTGAAGTTTGAAACTA 653
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 540 ACCGATGCTGTTGACGACGATGATGAGAACTTACATCGTCGTGCTTGAAGTTTGAAACTA 599
Query 654 AGTTGGGT 661
||| ||||
Sbjct 600 AGTCGGGT 607
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30269596098
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5