BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G50040.1 Length=528 Score E Sequences producing significant alignments: (Bits) Value Ahg495062 jgi|Araly1|495062|fgenesh2_kg.8__878__AT5G50040.1 686 0.0 > Ahg495062 jgi|Araly1|495062|fgenesh2_kg.8__878__AT5G50040.1 Length=536 Score = 686 bits (371), Expect = 0.0 Identities = 483/536 (90%), Gaps = 12/536 (2%) Strand=Plus/Plus Query 1 ATGGCTTCTCCCTCCAACTATTTTTTCCTAGTTTCTCTTGCAGTTCTGTTACCATTTCTC 60 ||||||||| ||||| |||||||| ||||||||||||||||||||||| |||||||||| Sbjct 1 ATGGCTTCTTCCTCCTACTATTTTGGCCTAGTTTCTCTTGCAGTTCTGTCACCATTTCTC 60 Query 61 ATAATCTTTGCTTCGGCCACAACTTACATTGACGCCATATGTCAAAGTGTTACCGACAAA 120 |||||| |||||||||||||| |||||| ||||||||||||||| |||||||||||||| Sbjct 61 TTAATCTCTGCTTCGGCCACAAATTACATCGACGCCATATGTCAACGTGTTACCGACAAA 120 Query 121 GCCTTCTGCGCCAAAACTTTGAACGCATACCCTGCCG------C-G--G--GC-TCTGCC 168 |||||||| |||||||||||||||||||||||||||| | | | || |||||| Sbjct 121 GCCTTCTGTGCCAAAACTTTGAACGCATACCCTGCCGCATACCCTGCCGCTGCTTCTGCC 180 Query 169 ACCAGCCAGTTTCAAGCAGCTACGGCCACGCTCAACCTAGCCATTTCTTATGCCGATAAG 228 ||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||| Sbjct 181 ACCAGCCAGTTTCAAGCAGCTGTGGCCACCCTCAACCTAGCCATATCTTATGCCGATAAG 240 Query 229 TCTGCGGGTTTCACCGGAAATGCGGCAAAGGAGAATCCAACCTTGAAGACGCAATTTGCA 288 | ||||||||||| ||||||||||||||||| ||||||| |||||||||||| ||||| Sbjct 241 TGTGCGGGTTTCAGTGGAAATGCGGCAAAGGAAAATCCAAACTTGAAGACGCAGTTTGCG 300 Query 289 GCGAGTCAAGATGCCTTTGTGACCATTAGCAAGTCTCTCAAGAGTGCTGCTTCGGAACTC 348 || || |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||| Sbjct 301 GCTAGCCAAGATGCCTTTGTGACCATTAGCAAGTCTGTCAAGAGCGCTGCCTCGGAACTC 360 Query 349 AAGATATCGCCAGACACTGCCAACTATGATGTCATGGTTTGTAGTGACAGCATAGCGACG 408 ||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||| | Sbjct 361 AAGGTATCGCCAGACACTGCCAACTATGACGTCATGGTTTGTAGTGATAGCATAGCGGTG 420 Query 409 GTGAAGAATTTGGTAGAGAAAAATACAGACAATTCGTCAAAGACTGTTATGACGATGACA 468 |||||||||| ||||| ||||||| |||||||| |||| ||||||||||||||||||||| Sbjct 421 GTGAAGAATTCGGTAGGGAAAAATTCAGACAATGCGTCGAAGACTGTTATGACGATGACA 480 Query 469 TTGATGATGGAGAAACTTCTTACAATCGCCGTTGGAGCCACTGTCGCTGTTGGCGG 524 |||||||||||||| |||||| | ||||| |||||||||||||||||||||||||| Sbjct 481 TTGATGATGGAGAAGCTTCTTGCTATCGCGGTTGGAGCCACTGTCGCTGTTGGCGG 536 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19230416856 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5