BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G50040.1

Length=528
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg495062 jgi|Araly1|495062|fgenesh2_kg.8__878__AT5G50040.1          686    0.0  


> Ahg495062 jgi|Araly1|495062|fgenesh2_kg.8__878__AT5G50040.1
Length=536

 Score =  686 bits (371),  Expect = 0.0
 Identities = 483/536 (90%), Gaps = 12/536 (2%)
 Strand=Plus/Plus

Query  1    ATGGCTTCTCCCTCCAACTATTTTTTCCTAGTTTCTCTTGCAGTTCTGTTACCATTTCTC  60
            ||||||||| ||||| ||||||||  ||||||||||||||||||||||| ||||||||||
Sbjct  1    ATGGCTTCTTCCTCCTACTATTTTGGCCTAGTTTCTCTTGCAGTTCTGTCACCATTTCTC  60

Query  61   ATAATCTTTGCTTCGGCCACAACTTACATTGACGCCATATGTCAAAGTGTTACCGACAAA  120
             |||||| |||||||||||||| |||||| ||||||||||||||| ||||||||||||||
Sbjct  61   TTAATCTCTGCTTCGGCCACAAATTACATCGACGCCATATGTCAACGTGTTACCGACAAA  120

Query  121  GCCTTCTGCGCCAAAACTTTGAACGCATACCCTGCCG------C-G--G--GC-TCTGCC  168
            |||||||| ||||||||||||||||||||||||||||      | |  |  || ||||||
Sbjct  121  GCCTTCTGTGCCAAAACTTTGAACGCATACCCTGCCGCATACCCTGCCGCTGCTTCTGCC  180

Query  169  ACCAGCCAGTTTCAAGCAGCTACGGCCACGCTCAACCTAGCCATTTCTTATGCCGATAAG  228
            |||||||||||||||||||||  |||||| |||||||||||||| |||||||||||||||
Sbjct  181  ACCAGCCAGTTTCAAGCAGCTGTGGCCACCCTCAACCTAGCCATATCTTATGCCGATAAG  240

Query  229  TCTGCGGGTTTCACCGGAAATGCGGCAAAGGAGAATCCAACCTTGAAGACGCAATTTGCA  288
            | |||||||||||  ||||||||||||||||| ||||||| |||||||||||| ||||| 
Sbjct  241  TGTGCGGGTTTCAGTGGAAATGCGGCAAAGGAAAATCCAAACTTGAAGACGCAGTTTGCG  300

Query  289  GCGAGTCAAGATGCCTTTGTGACCATTAGCAAGTCTCTCAAGAGTGCTGCTTCGGAACTC  348
            || || |||||||||||||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct  301  GCTAGCCAAGATGCCTTTGTGACCATTAGCAAGTCTGTCAAGAGCGCTGCCTCGGAACTC  360

Query  349  AAGATATCGCCAGACACTGCCAACTATGATGTCATGGTTTGTAGTGACAGCATAGCGACG  408
            ||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||  |
Sbjct  361  AAGGTATCGCCAGACACTGCCAACTATGACGTCATGGTTTGTAGTGATAGCATAGCGGTG  420

Query  409  GTGAAGAATTTGGTAGAGAAAAATACAGACAATTCGTCAAAGACTGTTATGACGATGACA  468
            |||||||||| ||||| ||||||| |||||||| |||| |||||||||||||||||||||
Sbjct  421  GTGAAGAATTCGGTAGGGAAAAATTCAGACAATGCGTCGAAGACTGTTATGACGATGACA  480

Query  469  TTGATGATGGAGAAACTTCTTACAATCGCCGTTGGAGCCACTGTCGCTGTTGGCGG  524
            |||||||||||||| |||||| | ||||| ||||||||||||||||||||||||||
Sbjct  481  TTGATGATGGAGAAGCTTCTTGCTATCGCGGTTGGAGCCACTGTCGCTGTTGGCGG  536



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19230416856


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5