BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50060.1
Length=501
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331409 jgi|Araly1|331409|fgenesh1_pm.C_scaffold_8000752 676 0.0
> Ahg331409 jgi|Araly1|331409|fgenesh1_pm.C_scaffold_8000752
Length=501
Score = 676 bits (366), Expect = 0.0
Identities = 457/502 (91%), Gaps = 2/502 (0%)
Strand=Plus/Plus
Query 1 ATGGCAGTTCTATCCGAAATTCTCTTTATCTCTTCTTCGGGCTTAACCTCCACAAAATAT 60
|||||||||||||||||||||||||| || ||| |||| | |||||| |||||||| |||
Sbjct 1 ATGGCAGTTCTATCCGAAATTCTCTTAATATCTCCTTCAGCCTTAACATCCACAAAGTAT 60
Query 61 ATTGATGCGCTATGCCAACATGTGGAAAACGGTACCTTCTGCATGCACATGTTGAGAGCC 120
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 61 ATTGATGCGATATGCCAACATGTGGAAAACGGTACCTTCTGCATGCAAATGTTGAGAACC 120
Query 121 TATCCTCCCGCGGTTACTGCCACCGATTTGTTTTCCCTGGCTAACATCGTGATCAACCTC 180
||||||||||||||| |||||||||| |||||||| || |||||||||||||||||||||
Sbjct 121 TATCCTCCCGCGGTTTCTGCCACCGACTTGTTTTCACTCGCTAACATCGTGATCAACCTC 180
Query 181 GGCATATCCTACGCCAACAACACGGGGGCTTTTGCCGCCGAAG-CGGCTAAGAAAGAGCC 239
|||||||||||||||||||||||||||| || |||||||| || | || |||| ||||||
Sbjct 181 GGCATATCCTACGCCAACAACACGGGGGGTTATGCCGCCG-AGACAGCAAAGAGAGAGCC 239
Query 240 AACGTTGAAGGTGCAGTTCAAGTCATTCCAGCATGAATATGACGGTATTCAGTTGTATCT 299
|| ||||||| ||||||||| |||| |||||||||||||||||||||||| ||||||||
Sbjct 240 TACATTGAAGGCGCAGTTCAATTCATGCCAGCATGAATATGACGGTATTCAATTGTATCT 299
Query 300 AAGAATGGCAAGGGGGGAGCTCAAGGAATCTCCAATGAGTGCAAACTATGACATTTTTCG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 300 AAGAATGGCAAGGGGGGAGCTCAAGGAATCTCCAATGAGTGCAAACTATGACATTTTCCG 359
Query 360 TTGTACGGATATCACTATGTACCTGAAGGATGTGGTCGGAGGAAACAGAGACAACACCTC 419
||||||||| ||||| |||||| |||| ||| ||||||| ||||||||||||| | ||||
Sbjct 360 TTGTACGGACATCACCATGTACGTGAAAGATTTGGTCGGGGGAAACAGAGACACCGCCTC 419
Query 420 TAAAACGTTCATGGATATGACATTGCAAATGGAGAACATTATCGATGTTGCCCTTGGAGC 479
|||||||||||||| ||||||||||||||||| ||| |||| ||||| ||| |||||||
Sbjct 420 GAAAACGTTCATGGAGATGACATTGCAAATGGAAAACCTTATTGATGTCGCCATTGGAGC 479
Query 480 CACCGTAGCTCTTGGCGGGTGA 501
|| ||||||||||||||||||
Sbjct 480 GACAGTAGCTCTTGGCGGGTGA 501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18200215953
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5