BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50070.1
Length=552
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331410 jgi|Araly1|331410|fgenesh1_pm.C_scaffold_8000753 843 0.0
Ahg914873 jgi|Araly1|914873|Al_scaffold_0001_5127 289 2e-77
> Ahg331410 jgi|Araly1|331410|fgenesh1_pm.C_scaffold_8000753
Length=552
Score = 843 bits (456), Expect = 0.0
Identities = 520/552 (94%), Gaps = 0/552 (0%)
Strand=Plus/Plus
Query 1 ATGACTTCTTCTTCTCATTGTTTCTTGATCGTTTCAGTGGCACTTCTATTGCAAGTTCTC 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTTCTTCTTCTCATTGTTTCTTGATCGTTTCAGTGGCACTTCTATTGCAAGTTCTC 60
Query 61 TTATCCCCTGTTTCGGCCTTAACCTTAACCTCCACAAAATACATTAATAAATTATGCCAG 120
|||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 61 GTATCCCCTGTTTCGGCATTAACCTTAACCTCCACAAAATACATCGATAAACTATGCCAG 120
Query 121 ATGTCATTTGTCGACAATAAACCCTTCTGTTTGCAAACATTGAGTGCCTATCCTCCTGCG 180
||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATGCCATTAGTCGACAGTAAACCCTTCTGTTTGCAAACATTGAGTGCCTATCCTCCTGCT 180
Query 181 GCTTCTGCCACTGGCTTGCTCCCACTTGCGTCAGCCGTGATCCGCGGCATTGTCCTACCC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTTCTGCCACTGGCTTGCTCCCACTTGCGTCAGCCGTGATCCGCGGCATTGTCCTACCC 240
Query 241 CAAGCCAAGAAGTCTGCGAGTTTTGCAAATGGAGCAGCGAAAAAGGAGCCGAGCTTGAAG 300
|||||||||||||| |||||||||||| ||| |||||| ||||||||||||| |||||||
Sbjct 241 CAAGCCAAGAAGTCGGCGAGTTTTGCAGATGAAGCAGCAAAAAAGGAGCCGAACTTGAAG 300
Query 301 ACACAGTTCCAGACGTGCCAAGAGGCCTTTGTAAGTATTGGAGATTCTCTCATGAGCGCT 360
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 301 ACACAGTTCCAGACGTGCCAAGAGGCCTATGAAAGTATTGGAGATTCTCTCATGAGCGCT 360
Query 361 TTTGAAGAACTCAAGCGCGATCCACATATCGCAACCTATGATGTTATGACTTGTACCGAC 420
||||||||||||||||| |||| || |||||||||||||||| |||||||||||||||
Sbjct 361 CTTGAAGAACTCAAGCGCTCTCCATATGTCGCAACCTATGATGTAATGACTTGTACCGAC 420
Query 421 CATACAACCCAAGTGAAGAATTTGGTCGGAAAAAACACAGATGTGGCTTCGAAGACTCTC 480
|| |||| ||||||||||||||||||||| ||||||| ||| ||||||||||||||||||
Sbjct 421 CACACAAGCCAAGTGAAGAATTTGGTCGGTAAAAACAGAGACGTGGCTTCGAAGACTCTC 480
Query 481 ATAGAGATGACAATGCAAATGGAGAAGCTCATTCCTCTTGCTCTTGCATCCACACAAGTT 540
|||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||
Sbjct 481 ATAGAGATGACAATGCAAATGGAGAAGCTCCTTCCTCTCGCTCTTGGATCCACACAAGTT 540
Query 541 CTTGGCGGGTGA 552
|||||||||||
Sbjct 541 GTTGGCGGGTGA 552
> Ahg914873 jgi|Araly1|914873|Al_scaffold_0001_5127
Length=558
Score = 289 bits (156), Expect = 2e-77
Identities = 379/484 (78%), Gaps = 26/484 (5%)
Strand=Plus/Plus
Query 82 ACCTT-AACCTCCACAAAATACATTAATAAATTATGCCAGATGTCATTTGTCGACAATAA 140
||||| || ||||||||||||||| ||||||||||| ||||| ||| ||||| | ||
Sbjct 88 ACCTTGAA-CTCCACAAAATACATCGATAAATTATGCGAGATGCCATCCATCGACGACAA 146
Query 141 ACCCTTCTGTTTGCAAACATTGAGTGCCTATCCTCCTGCGGCTTCTGCCACTGGCTTGCT 200
| |||| ||||||||||| ||||| || ||||||| ||| ||||||||||||||||||||
Sbjct 147 AGCCTTTTGTTTGCAAACGTTGAGCGCATATCCTCTTGCCGCTTCTGCCACTGGCTTGCT 206
Query 201 CCCACTTGCGTCAGCCGTGATCCGCGGCATTGTCCTACCCCAAGCCAAGAAGTCTGC-GA 259
|||||||||| || ||||||||||||||||| | ||||| | |||||| || || ||
Sbjct 207 CCCACTTGCGGAAGTCGTGATCCGCGGCATTGACATACCCTATGCCAAGTTGT-TGGTGA 265
Query 260 GTTTTGCAAATGGAGCAGC-GAAAAAGG-AGCCGAGCT-TGAAG-ACACAGTTCCAGACG 315
| |||| | ||||||| ||||| || | ||| ||| ||||| | ||||||| || ||
Sbjct 266 AATCTGCAGACAGAGCAGCAGAAAA-GGTA-CCG-GCTCTGAAGGA-ACAGTTCAAGGCG 321
Query 316 TGCCAAGAGGCCT--TTGTAAGTATTGGAGAT-TCTCTCATGAGCGCTT-TTGAAGAACT 371
|||| ||| |||| || | ||| | | || ||||||| ||| ||| || | |||||
Sbjct 322 TGCCGAGATGCCTACTT-TCT-TATAGTA-ATGTCTCTCAAGAGTGCTGCTTCA-GAACT 377
Query 372 CAAGCGCGATCCACATATCGC-AACCTATGATGTTATGACTTGTACCGACCATACAACCC 430
|||| |||| | | ||| ||| ||||||| |||| |||| |||||| |||||||
Sbjct 378 CAAGATATCTCCAGAAACCGCTAAC-TATGATGCTATGGTTTGTTTCGACCAAACAACCC 436
Query 431 AAGTGAAGAATTTGGTCGGAAAAAACACAGA-TGTGGCTTCGAAGACTCTCATAGAGATG 489
|||| |||| ||| |||| ||||||| ||| | || ||||||||| |||||| ||||||
Sbjct 437 TAGTGCAGAAATTGATCGGGAAAAACAAAGACT-TGACTTCGAAGAGTCTCATGGAGATG 495
Query 490 ACAATGCAAATGGAGAAGCTCATTCCTCTTGCTCTTGCATCCACAC-AAGTTCTTGGCGG 548
||| ||| ||||| |||||||||| ||| ||| ||| | |||| | ||||| |||| ||
Sbjct 496 ACATTGCGTATGGATAAGCTCATTCGTCTCGCTATTGGAGCCAC-CGAAGTTGTTGGAGG 554
Query 549 GTGA 552
|||
Sbjct 555 ATGA 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20146150992
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5