BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50080.1
Length=889
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495065 jgi|Araly1|495065|fgenesh2_kg.8__881__AT5G50080.1 1242 0.0
> Ahg495065 jgi|Araly1|495065|fgenesh2_kg.8__881__AT5G50080.1
Length=874
Score = 1242 bits (672), Expect = 0.0
Identities = 808/875 (92%), Gaps = 3/875 (0%)
Strand=Plus/Plus
Query 1 GACAACTTTATTTCCATATATAAACTAGTCAAGCCTCTAAAGAGAGACCACATTCCG-AA 59
||||||||| |||||||||||||| |||||||||||||| ||| |||| |||||| | ||
Sbjct 1 GACAACTTTGTTTCCATATATAAATTAGTCAAGCCTCTATAGATAGACTACATTCGGAAA 60
Query 60 AAGTACTTGTTTATTGGTGTTATTCATCGCTGCTCAAGGTGGCAAACCAAGGAGAACAAG 119
|| |||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 61 AAATACTAGTTTATTGGTGTTATTTGTCGCTCCTCAAGGTGGCAAACCAAGGAGAACAAG 120
Query 120 AAGAGTCCAGGGCCAATGAGCCTGAGGGTATCAAATCAGTGATTGATGACATCTACATTT 179
|||||||||||||||||||||||||||||||| |||||||| |||||||| |||||| ||
Sbjct 121 AAGAGTCCAGGGCCAATGAGCCTGAGGGTATCGAATCAGTGGTTGATGACGTCTACAATT 180
Query 180 TTGAAGACGACCCTGTGGTTGATAGGTTCAATAGGTTTGGCACGGAGATGTCTGCCATGG 239
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 TTGAAGACGACCCTGTTGTTGATAGGTTCAATAGGTTCGGCACGGAGATGTCTGCCATGG 240
Query 240 TCTCGGCCTTGACACAGGTGGTTTCTGCTCGCTCTCAGACTGAGGCTGAAGGTGCTCACT 299
||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||
Sbjct 241 TCTCGGCTTTGACACAGGTTGTTTCTGCTCGCTCTCAGACTGAGGCCGAAGGGGCTCACT 300
Query 300 CTTCTTCCTCTTCGGCTGGACATAAAAGAGGATGGCTTGGAATCGATTCTGCT-CCTATT 358
|||||||||||||||||||||| || ||||| ||||||||||||||||||| | ||||||
Sbjct 301 CTTCTTCCTCTTCGGCTGGACAGAAGAGAGGTTGGCTTGGAATCGATTCTG-TGCCTATT 359
Query 359 CCCTCATCATTTGCTCGTGTAGACTCTTCACATAATCCGATCGAAGAATCCATGAGCAAG 418
||||| |||||||||| ||||||||||||| || ||||||||||||||| | ||||||
Sbjct 360 CCCTCCCCATTTGCTCGAGTAGACTCTTCACTTAGTCCGATCGAAGAATCAACAAGCAAG 419
Query 419 GCATTTCCAGAGGAAGCAAGGGAGaaaaaaaGGAGGTACAGAGGAGTAAGGCAGAGACCA 478
||| | |||||||||||||||||||||| |||||| ||||| ||||||||||| ||||||
Sbjct 420 GCACTACCAGAGGAAGCAAGGGAGAAAAGAAGGAGATACAGGGGAGTAAGGCAAAGACCA 479
Query 479 TGGGGCAAATGGGCAGCTGAGATACGTGATCCACATAGAGCCGCTAGGGTTTGGCTCGGG 538
|||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 480 TGGGGCAAATGGGCGGCTGAGATACGCGATCCACATAGAGCCGCTAGAGTTTGGCTCGGG 539
Query 539 ACGTTTGATACAGCGGAGGCCGCGGCTAGAGCCTACGACGAGGCTGCACTCCGGTTCCGT 598
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 ACGTTTGATACAGCGGAAGCCGCGGCTAGAGCCTACGACGAGGCTGCACTCAGGTTCCGT 599
Query 599 GGAAATAAAGCAAAGCTAAATTTCCCAGAGGATGTAAGGATTCTTCCTCCTCCCCCTCCT 658
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 600 GGAAATAAAGCAAAGCTTAATTTCCCAGAGGATGTAAGGATTCTTCCTCCTCCTCCTCCT 659
Query 659 CTTCTTCGTTCACCAGCTGACACGGTGGCGAATAAAGCAGAAGAGGATCTGATAAATTAT 718
||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 660 CTTCTTCCTCCACCAGCTGACACGGCGGCGAATAAAGCAGAAGAGGATCTGATAAATTAT 719
Query 719 TGGAGTTATACAAAGTTGTTGCAAAGTTCAGGCCAACGGTCATTTCTCGAGCGAGGACAA 778
||||||||| ||||||||||||||||||||| |||||||| | | | |||||||||||||
Sbjct 720 TGGAGTTATTCAAAGTTGTTGCAAAGTTCAGACCAACGGTTAATCCCCGAGCGAGGACAA 779
Query 779 GAAGAGAGTAGTAACATATTTGAACATTCACCAATGGAACAACCTCTGCCTCCTTCAAGT 838
|||||||||| |||||| | ||||||| |||||||||||||||| ||||||||||||||
Sbjct 780 GAAGAGAGTACCAACATACTAGAACATTTACCAATGGAACAACCTTTGCCTCCTTCAAGT 839
Query 839 TCTGGTCCAAGTTCCTCTAATTTTCCTGCACCTTC 873
|||||||||||||||||| ||||| || ||||||
Sbjct 840 TCTGGTCCAAGTTCCTCTGATTTTTGTGGACCTTC 874
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32938200288
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5