BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50090.1
Length=806
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949525 jgi|Araly1|949525|scaffold_801412.1 763 0.0
Ahg887412 jgi|Araly1|887412|Al_scaffold_0363_1 477 5e-134
> Ahg949525 jgi|Araly1|949525|scaffold_801412.1
Length=520
Score = 763 bits (413), Expect = 0.0
Identities = 475/505 (94%), Gaps = 4/505 (1%)
Strand=Plus/Plus
Query 108 AAGATGGGAAACTGTCAAGCAGTGGATACAGCGAGAGTGGTGATACAACACCCAAATGGG 167
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 18 AAGATGGGAAACTGTCAAGCAGTGGATACAGCGAGAGTAGTGATACAACACCCAAATGGG 77
Query 168 AAAGAAGAAAAGTTAAGTTGTCCAGTTTCTGCAAGTTATGTGATGAAGATGAATCCTGGC 227
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 78 AAAGAAGAAAAGTTAAGTTGTCCAGTTTCTGCTAGTTATGTGATGAAGATGAATCCTGGT 137
Query 228 CACTGTGTTTCTCTCCTCATCTCTACCACCGCTCTCTCGTC-AGCATCTTCCGGTCATGG 286
|||||||||||||| || ||||| ||||| ||||||| | | | | ||||||||||||||
Sbjct 138 CACTGTGTTTCTCTTCTTATCTCCACCACTGCTCTCTTGGCCACC-TCTTCCGGTCATGG 196
Query 287 AGGGCCTCTTAGGCTCACGAGGATCAAGCTCCTTCGTCCCACGGATACGCTTGTTCTCGG 346
||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 197 AGGCCCTCTTAGGCTCACAAGGATCAAGCTCCTTCGTCCAACGGATACGCTTGTTCTCGG 256
Query 347 CCACGTCTATAGACTCATTACCACCAAAGAGGTTATGAAGGGTTTAATGGCCAAAAAATG 406
|||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 257 CCACGTCTATAGACTCATTACCACTAAAGAGGTAATGAAGGGTTTAATGGCGAAAAAATG 316
Query 407 TTCGAAGTTGAAGAAAGAAAGTAAA-GGCTCGGATGATAAGCTAGAGATGGTGAAAGCAA 465
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct 317 TTCGAAGTTGAAGAAAGAAAGTAAATGG-TCGGAAGATAAGCTAGAGATGGTGAAAGCAA 375
Query 466 TAAACTCTACTAAGCTTGACAATGAAGATCAGCTGCAAATGAAGAAACAGGAGAAAGAAA 525
| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 376 TTAACTCTACTAAGCTTGACAATGAAGATCAGCTGCAAATGAAGAAGCAAGAGAAAGAAA 435
Query 526 GGTCAAGAATCTCAAGATCATGGCAGCCATCATTACAAAGCATATCGGAAGGAGGATCAA 585
|||||||||||||||||||||||||||| || ||||||||||| || |||||||| || |
Sbjct 436 GGTCAAGAATCTCAAGATCATGGCAGCCCTCTTTACAAAGCATTTCAGAAGGAGGGTCTA 495
Query 586 GCTGAGCAAATTCTAAAACTTTGGG 610
|||||||||||||||||||||||||
Sbjct 496 GCTGAGCAAATTCTAAAACTTTGGG 520
> Ahg887412 jgi|Araly1|887412|Al_scaffold_0363_1
Length=351
Score = 477 bits (258), Expect = 5e-134
Identities = 319/348 (92%), Gaps = 6/348 (2%)
Strand=Plus/Plus
Query 246 ATCTCTACCACCGCTCTCTC-GTCAGCATCTTCCGGTCATGGAGGGCCTCTTAGGCTCAC 304
||||| | ||| |||||||| | || | |||||| |||||||||| ||||||||||||||
Sbjct 7 ATCTCCATCACTGCTCTCTCGGCCA-CCTCTTCCAGTCATGGAGGCCCTCTTAGGCTCAC 65
Query 305 GAGGATCAAGCTCCTTCGTCCCACGGATACGCTTGTTCTCGGCCACGTCTATAGACTCAT 364
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 66 AAGGATCAAGCTCCTTCGTCCAACGGATACGCTTGTTCTCGGCCACGTCTATAGACTCAT 125
Query 365 TACCACCAAAGAGGTTATGAAGGGTTTAATGGCCAAAAAATGTTCGAAGTTGAAGAAAGA 424
|| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 126 TAGCACTAAAGAGGTTATGAAGGGTTTAATGGCGAAAAAATGTTCGAAGTTGAAGAAAGA 185
Query 425 AAGTAAAGGCTCGGATGATAAGCTAGAGATGGTGAAAGCAA-TAAACTCTACTAAGCTTG 483
||||||||| ||||| ||||||||||||||||||||||||| ||| ||||| ||||||||
Sbjct 186 AAGTAAAGGGTCGGAAGATAAGCTAGAGATGGTGAAAGCAACTAA-CTCTATTAAGCTTG 244
Query 484 ACAATGA-AGATCAGCTGCAAATGAAGAAACAGGAGAAAGAAAGGTCAAGAATCTCAAGA 542
||||| | ||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 245 ACAAT-ACAGATCAGCTGCAAATGAAGAAGCAAGAGAAAGAAAGGTCAAGAATCTCAAGA 303
Query 543 TCATGGCAGCCATCATTACAAAGCATATCGGAAGGAGGATCAAGCTGA 590
||||||||||| || ||||||||||| || |||||||| || ||||||
Sbjct 304 TCATGGCAGCCCTCTTTACAAAGCATTTCAGAAGGAGGGTCTAGCTGA 351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29773998177
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5