BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50100.1
Length=977
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495066 jgi|Araly1|495066|fgenesh2_kg.8__882__AT5G50100.1 1293 0.0
Ahg915254 jgi|Araly1|915254|Al_scaffold_0008_5 409 2e-113
> Ahg495066 jgi|Araly1|495066|fgenesh2_kg.8__882__AT5G50100.1
Length=858
Score = 1293 bits (700), Expect = 0.0
Identities = 784/824 (95%), Gaps = 7/824 (1%)
Strand=Plus/Plus
Query 64 ATGGCAACGAGAGGAGCTGTTGCTGCTGCTGCATCCACAATATGGAAGCACCGAAGAAAC 123
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAACGAGAGGAGC---TGCTGCTGCTGCATCCACAATATGGAAGCACCGAAGAAAC 57
Query 124 CCTTCTCTTCGATCATTATCTCGCCATTTCAATCCCAATTTCAATCATAGAATCATCCCA 183
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 58 CCTTCTCTTCGATCATTATCAAACCATTTCAATCCCAATTTCAATCACAGAATCATCCCA 117
Query 184 ACAGGGTTTAAATATCAAGTTAGGGCGATACAAGGAACAAGTACTGATCCTGTCATTACA 243
|| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 118 ACCGGGTTTAAATATCAAGTTAGAGCGATACAAGGAACAAGTACTGATCCTGTTATTACA 177
Query 244 CCATTAAAGAACAGAGAGGAACCAAAGCCACAAAACTGGAAAATCAAAATGCTTTATGAT 303
||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct 178 CCATTGAAGAACAGAGATGAACCAAAACCACAAAATTGGAAAATCAAAATGCTTTATGAT 237
Query 304 GGAGATTGTCCTCTCTGTATGCGTGAGGTTAATATGCTTATGGAAAGGAATGAAAAACAT 363
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GGAGATTGCCCTCTCTGTATGCGTGAGGTTAATATGCTTATGGAAAGGAATGAAAAACAT 297
Query 364 GGAACTATAAAGTTTGTCGACATAAGTTCAAATGATTATTCCCCGGAAGATAATCAAGGG 423
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 298 GGAACTATAAAGTTCGTCGACATAAGTTCAAATGATTATTCTCCGGAAGATAATCAAGGG 357
Query 424 CTTGATTACAAAACAGTGATGGGGCAGATTCATGCCATTCAGTCTGATGGTAACGTTGTT 483
||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| | |
Sbjct 358 CTTGATTACAAAACAGTAATGGGGCAGATTCATGCTATTCAATCTGATGGTAACGTCG-T 416
Query 484 AA-GGGTGTGGAGGCATTTAGGAGATTGTATGAAGAAGTTGGGCTTGGATGGGTTTACAC 542
|| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 417 AACAGGTGTGGAGGCATTTAGGAGATTGTATGAAGAAGTTGGACTTGGTTGGGTTTACAC 476
Query 543 TATCACCAAATTTGAACCAATAGGGAAGTTAGCAGATGTTGTGTATGATGTATGGGCTAA 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TATCACCAAATTTGAACCAATAGGGAAGTTAGCAGATGTTGTGTATGATGTATGGGCTAA 536
Query 603 ATACCGACTTCAAGTCACAGGGAGGCCATCTATAGAAGCTATTCTTGAAGCAAGAAAGAA 662
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 537 ATATCGACTTCAAGTCACAGGGAGGCCATCTTTAGAAGCTATTCTTGAAGCAAGAAAGAA 596
Query 663 AGATAAGGTAGAGACATGTGGTGAAAGCAAGAACTGCAAGATATGAATTTTCTTTATACT 722
||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||
Sbjct 597 AGATAAGGTAGAGACATGTGGTGAAAGCAAGGACTGCAAGATATGATTTTTCTTCATACT 656
Query 723 CTTTGAATTGTTACAAAATACCAAAACCAGTTTGGAGTTACAAATTTTCTTTATGTGAGT 782
|||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||| |
Sbjct 657 CTTTGAATTGTTACAAAATACCAAAACCAGTTTGGACTTAGAAATTATCTTTATGTGACT 716
Query 783 GTGAGAATTTGTATATATATGATACACA-GCCCCATTACATTAGCCAAATCATCCTGATG 841
||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||
Sbjct 717 GTGAGAATTTGTATAAATATGATACATAAGCCCCATTACATTAGCCAAATCATCCTGATG 776
Query 842 ATACATT-ATACACATGAATAATTTCAGCAAATTTTGAAACTGT 884
||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 777 ATACATTTATACACATGAATATTTTCAGCAAATTTTGAAACTGT 820
> Ahg915254 jgi|Araly1|915254|Al_scaffold_0008_5
Length=747
Score = 409 bits (221), Expect = 2e-113
Identities = 327/375 (87%), Gaps = 20/375 (5%)
Strand=Plus/Plus
Query 191 TTAAATATCAAGTTAGGGCGATACAAGGAACAAGTACTGATCCTGTCATTACACCATTAA 250
||||||||||||||||||| ||||||||| ||||| ||||||||| |||||||||| |
Sbjct 218 TTAAATATCAAGTTAGGGCAATACAAGGAGCAAGTGTTGATCCTGTTGTTACACCATTGA 277
Query 251 AGAACAGAGAGGAACCAAAGCCACAAAACTGGAAAATCAAAATGCTTTATGATGGAGATT 310
|||| |||||||||||||| || ||||| |||||||||||| ||||||||||||||||||
Sbjct 278 AGAATAGAGAGGAACCAAAACCTCAAAATTGGAAAATCAAATTGCTTTATGATGGAGATT 337
Query 311 GTCCTCTCTGTATGCGTGAGGTTAATA-T--GCTTATGGAAAGGAATGAAAAACATGGAA 367
||||||||||||||||||||||||||| | ||||| |||||||||||| || ||||||
Sbjct 338 GTCCTCTCTGTATGCGTGAGGTTAATAATATGCTTAAGGAAAGGAATGAGAAGTATGGAA 397
Query 368 CTATAAAGTTTGTCGACATAAGTTCAAATGATTATTCCCCGGAAGATAATCAAGGGCTTG 427
|||| |||||||||||||| ||| ||| |||||||||||||||||| |
Sbjct 398 CTATTAAGTTTGTCGACAT---TTC-----------CCC-GGAAGATAATCAAGGGCTAG 442
Query 428 ATTACAAAACAGTGATGGGGCAGATTCATGCCATTCAGTCTGATGGTAACGTTGTTA-AG 486
|||||||||| || |||||||| || ||||| ||| | |||||||||||||| || | ||
Sbjct 443 ATTACAAAACCGTAATGGGGCAAATCCATGCTATTGAATCTGATGGTAACGTGGTAATAG 502
Query 487 GGTGTGGAGGCATTTAGGAGATTGTATGAAGAAGTTGGGCTTGGATGGGTTTACACTATC 546
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 GC-GTGGAGGCATTTAGGAGATTGTATGAAGAAGTTGGGCTTGGATGGGTTTACACTATC 561
Query 547 ACCAAATTTGAACCA 561
|||||||||||||||
Sbjct 562 ACCAAATTTGAACCA 576
Score = 158 bits (85), Expect = 9e-38
Identities = 112/124 (90%), Gaps = 6/124 (5%)
Strand=Plus/Plus
Query 64 ATGGCAACGAGAGGAGCTGTTGCTGCTGCTGCATCCACAATATGGAAGCACCGAAGAAAC 123
||||||||||||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAACGAGAGGAGC---TG-T--TGCTGCATCCACAATATGGAAGCACCGAAGAAAC 54
Query 124 CCTTCTCTTCGATCATTATCTCGCCATTTCAATCCCAATTTCAATCATAGAATCATCCCA 183
| |||||||||||||||||||| |||||||||| ||||||||| || | |||||||||||
Sbjct 55 CTTTCTCTTCGATCATTATCTCACCATTTCAATTCCAATTTCACTCCTCGAATCATCCCA 114
Query 184 ACAG 187
||||
Sbjct 115 ACAG 118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36293016984
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5