BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50110.1
Length=1018
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916607 jgi|Araly1|916607|Al_scaffold_0008_1358 1059 0.0
> Ahg916607 jgi|Araly1|916607|Al_scaffold_0008_1358
Length=627
Score = 1059 bits (573), Expect = 0.0
Identities = 610/628 (97%), Gaps = 2/628 (0%)
Strand=Plus/Plus
Query 253 ATGAACCTTACAGCAACTAAAGAAGCTGATGAAGTAATGGAGAGGCATATCGAAGATTCT 312
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAATCTTACAGCAACTAAAGAAGCTGATGAAGTAATGGAGAGGCATATCGAAGATTCT 60
Query 313 CTTGCGATATTGCCTCCTATAAAGACTTGTTACAACTTACATTCCAGTGATTTGTTTGAT 372
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 61 CTTGCGATATTGCCTCCTATAAAGACTTGTTACAACTTGCATTCCAATGATTTGTTTGAT 120
Query 373 CACATCAATTTAATCGATGTTGGAAGCGGGGCTGGTCTTCCTGGGTTGGTTCTAGCCATT 432
|| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 CATATCAATTTAATTGATGTTGGAAGCGGGGCGGGTCTTCCTGGGTTGGTTCTAGCCATT 180
Query 433 GCATGCCCAGATTGGAGAGTTACTCTACTGGAGTCTATAAATAAGCGATGTGTTTTCTTG 492
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 GCATGTCCAGATTGGAGAGTTACTCTACTGGAGTCTATAAATAAGCGTTGTGTTTTCTTG 240
Query 493 GAGCACGTTGTGAATGTTACCGGGCTTACAAATGTTACAATCGTTAGGGGCAGAGCAGAG 552
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 GAGCACGTCGTGAATGTTACCGGGCTTACAAATGTTAAAATCGTTAGGGGCAGAGCAGAG 300
Query 553 AGTTGTGGGCACGATGTTATGTACAGAGAGAAGTTTGATGTGGCTATTGCAAGAGCTGTC 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGTTGTGGGCACGATGTTATGTACAGAGAGAAGTTTGATGTGGCTATTGCAAGAGCTGTC 360
Query 613 GCGGAGATGAGAGTCTTAGCTGAATATTGTCTTCCTCTGGTTCGGATTGGTGGATTGTTT 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCGGAGATGAGAGTCTTAGCTGAATATTGTCTTCCTCTGGTTCGGATTGGTGGATTGTTT 420
Query 673 GTAGCTGCTAAGGGTCATGACCCAAAGGAGGAAGTTCAAAATGCAGAAAATGCTGTTCGC 732
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 421 GTAGCTGCTAAGGGTCATGACCCTAAGGAGGAAGTTCAAAATGCAGAAAATGCTGTTCGC 480
Query 733 TTGTTGGGTGGTTCAATACT-ACAAATTAGTCCAGTGGATTCACATAGCCCATACGGACA 791
|||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||
Sbjct 481 ATGTTGGGTGGTTCAAT-CTTACAAATCAGTCCAGTGGATTCACATAGCCCATACGGACA 539
Query 792 GCGGACAACGGTTGTTTGTCGTAAAGATCATTCCACCCCACAAAAATATCCACGTGAAGC 851
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 540 GCGGACAACGGTTATTTGTCGTAAAGATAATTCCACCCCACAAAAATATCCACGTGAAGC 599
Query 852 AGGTACTCCTGCTAAATTACCGTTGTAA 879
|||||||||| |||||||||||||||||
Sbjct 600 AGGTACTCCTTCTAAATTACCGTTGTAA 627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37856056581
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5