BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50115.1
Length=1458
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916649 jgi|Araly1|916649|Al_scaffold_0008_1400 643 0.0
Ahg949596 jgi|Araly1|949596|scaffold_801483.1 401 6e-111
Ahg359679 jgi|Araly1|359679|fgenesh1_pg.C_scaffold_674000001 363 3e-99
Ahg949571 jgi|Araly1|949571|scaffold_801458.1 315 8e-85
Ahg949600 jgi|Araly1|949600|scaffold_801487.1 215 8e-55
> Ahg916649 jgi|Araly1|916649|Al_scaffold_0008_1400
Length=1050
Score = 643 bits (348), Expect = 0.0
Identities = 621/746 (83%), Gaps = 46/746 (6%)
Strand=Plus/Plus
Query 698 CTCTAGACTCAAAGAAGTA-CGATGCAGCGAAAAGAGTAAAGATTAATGAAACCAAGAAC 756
||| |||||| ||||| | | ||||||| |||||||||||| | |||| |||||||
Sbjct 170 CTCAAGACTCGAAGAA-AAGCAATGCAGCCAAAAGAGTAAAG--T-GCGAAAGCAAGAAC 225
Query 757 ACT-ACTCATATGGTGAAT-GAGGATGAGTATAATGTGGTGG-TAATGAGTGTGCCGGAT 813
||| || || || | || ||||| || ||| |||| ||| | |||||||| || |||
Sbjct 226 ACTAAC-GATGTGAT-TATGGAGGAGGAATATGATGTAATGGCT-ATGAGTGTTCCAGAT 282
Query 814 GCTGATTACTACAACTTCGACAAGGATCGGACTC-TAGCTTCGTTT-GGAGAAAACCAGG 871
||||||| |||||||||||| ||||||||| || |||||| ||| ||||||||||| |
Sbjct 283 GCTGATTTCTACAACTTCGAAAAGGATCGG-GTCGAAGCTTC-TTTCGGAGAAAACCAAG 340
Query 872 TATGGGCTGCTTACGATGATTACGGAATGCCTCGGTGGTATGCATTGGTCCATAAGATTG 931
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 341 TATGGGCTGCTTATGATGATTACGGAATGCCTCGGTGGTATGCATTGGTCCATAAGGTTG 400
Query 932 TCTCTCAAGAACCGTTCGAGTTGTGTATTTCTTGGCTTGATGGCAAGAATAAGGGATATA 991
| ||||||||||||||| || ||||||||||||||||||||| ||||| || ||||||
Sbjct 401 TTTCTCAAGAACCGTTCAAGACGTGTATTTCTTGGCTTGATGGAAAGAAAAATGGATATG 460
Query 992 CGGGTTCAATGAAGAAGTGGATTGATTCAGG-GT--ATT--AC-A-A---GACG--A-G- 1037
|||||||||||||||||||||||||||||| || ||| || | | || | | |
Sbjct 461 TGGGTTCAATGAAGAAGTGGATTGATTCAGGAGTACATTGGACGATATGTGA-GAAAGGA 519
Query 1038 TGGGTGCTTCACA-AT-CG-GGAAACGAAACGTTTGGGCTCTTTATGCAAATTGGTCACC 1094
| ||||| || | || || | ||| | || |||||||||||||||| ||||||||||||
Sbjct 520 TTGGTGC-ACATATATCCGAGAAAAGGCAATGTTTGGGCTCTTTATGAAAATTGGTCACC 578
Query 1095 ATCTTGGGATATTTCAACTTCAGTAGAAGAAATGAACAAGTATGATATGGTAGAAGTGCT 1154
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||
Sbjct 579 ATCTTGGGATATTTCAACTTCAGTAGAAGAAAAGAACAAGTATGAAATGGTAGAAGTTCT 638
Query 1155 TCAAGATTTC-GATGAAGAAAGAGGTGTGACAGTTGTACCGCTAGTTAAAGTCCCAGGAT 1213
|||||||||| | |||||| |||||||||| ||||| || ||||| ||||||||||||
Sbjct 639 TCAAGATTTCAG-TGAAGAGGGAGGTGTGACCGTTGTGCCATTAGTTCAAGTCCCAGGAT 697
Query 1214 TCAAAACTGTGTTTCGTCGCCGTTCGAATCC-GAGGACATACCCAAGGAAAGAACTGTTC 1272
||| |||||| ||||| |||| ||| || | |||||||| ||||||||| |||||||||
Sbjct 698 TCATAACTGTCTTTCGACGCC-TTCCAAAACAGAGGACATTCCCAAGGAACGAACTGTTC 756
Query 1273 AGGTTCTCGCATCAAGTTGCTTATCAATTACTTACAAGTAAAAAATG-TAAGAATGCTCC 1331
|||||||||||||| || ||| ||| || ||||||||| || | || | ||||||||||
Sbjct 757 AGGTTCTCGCATCAGGTACCTTCTCATTTTCTTACAAGTCAAGA-TGGTGAGAATGCTCC 815
Query 1332 T-ACAGATTGCTTGGAGCTTGATCCAGCATCTTTGACACATGAGCTTCTCAA-AGTTCTC 1389
| | || |||||||||||||||||||||| ||||| |||| ||||| ||||| | || ||
Sbjct 816 TGA-AGGTTGCTTGGAGCTTGATCCAGCAGCTTTGCCACAAGAGCTGCTCAAGA-TTGTC 873
Query 1390 ACTGAGGAGGA--TGAGAGAATTGGA 1413
||| ||||||| ||| ||||| |||
Sbjct 874 ACTAAGGAGGAGATGAAAGAATCGGA 899
> Ahg949596 jgi|Araly1|949596|scaffold_801483.1
Length=1056
Score = 401 bits (217), Expect = 6e-111
Identities = 308/351 (88%), Gaps = 10/351 (3%)
Strand=Plus/Plus
Query 1069 TGGGCTCTTTATGCAAATTGGTCACCATCTTGGGATATTTCAACTTCAGTAGAAGAAATG 1128
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 635 TGGGCTCTTTATGAAAATTGGTCACCATCTTGGGATTTTTCAACTTCAGTAGAAGAAATG 694
Query 1129 AACAAGTATGATATGGTAGAAGTGCTTCAAGATTTCGATGAAGA-AAGAGGTGTGACAG- 1186
||||||||||| ||||||||||| |||||||||||||| ||||| || ||||||| ||
Sbjct 695 AACAAGTATGAAATGGTAGAAGTCCTTCAAGATTTCGACGAAGAGAAC-GGTGTGA-AGG 752
Query 1187 TTGTACCGCTAGTTAAAGTCCCAGGATTCAAAACTGTGTTTCGTCGCCGTTCGAA-TCCG 1245
|||| || || |||||| || | ||||| |||||| | || ||||||| | | || || |
Sbjct 753 TTGTGCCTCTTGTTAAACTCTCGGGATTTAAAACTTTATTCCGTCGCCATCC-AAGTCAG 811
Query 1246 AGGACATACCCAAGGAAAGAACTGTTCAGGTTCTCGCATCAAGTTGCTTATCAATTACTT 1305
||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 812 AGGACATACCCAAGGAAAGAACTATTCAGGTTCTCGCATCAAGTTGCTTATCAGTTGCTT 871
Query 1306 ACAAGTAAAAAATGTAAGAATGCTCCT-ACAGATTGCTTGGAGCTTGATCCAGCATCTTT 1364
||| || || || || ||||||||||| || | |||||||||||||||||||||| ||||
Sbjct 872 ACAGGTGAAGAAGGTGAGAATGCTCCTGACGG-TTGCTTGGAGCTTGATCCAGCAGCTTT 930
Query 1365 GACACATGAGCTTCTCAAAGTTCTCACTGAGGAGGA--TGAGAGAATTGGA 1413
||||| ||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct 931 GACACCGGAGCTTCTCAAGGTTCTCACTGAGGAGGAGATGAGAGAAGTGGA 981
> Ahg359679 jgi|Araly1|359679|fgenesh1_pg.C_scaffold_674000001
Length=1227
Score = 363 bits (196), Expect = 3e-99
Identities = 303/353 (86%), Gaps = 14/353 (4%)
Strand=Plus/Plus
Query 1069 TGGGCTCTTTATGCAAATTGGTCACCATCTTGGGATATTTCAACTTCAGTAGAAGAAATG 1128
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 730 TGGGCTCTTTATGAAAATTGGTCACCATCTTGGGATTTTTCAACTTCAGTAGAAGAAATG 789
Query 1129 AACAAGTATGATATGGTAGAAGTGCTTCAAGATTTC-GATGAAGAAAGAGGTGTGACAGT 1187
||||||||||| ||||||||||| |||||||||||| | |||||| |||||||||| ||
Sbjct 790 AACAAGTATGAAATGGTAGAAGTTCTTCAAGATTTCAG-TGAAGATGGAGGTGTGACGGT 848
Query 1188 TGTACCGCTAGTTAAAGTCCCAGGATTCAAAACTGTGTTTCGTCGCCGTTCGAATCCG-A 1246
||| || ||||| |||||||| |||||| |||||||||||||||| ||| || | |
Sbjct 849 TGTGCCATTAGTTCAAGTCCCAAGATTCATAACTGTGTTTCGTCGCA-TTCCAAAACATA 907
Query 1247 GGACATACCCAAGGAAAGAACTGTTCAGGTTCTCGCATCAAGTTGC-TTATCAATTACTT 1305
|||||| ||||||||| ||||||||||||||||||||||| || || || ||| || |||
Sbjct 908 GGACATTCCCAAGGAACGAACTGTTCAGGTTCTCGCATCAGGT-GCCTTCTCATTTTCTT 966
Query 1306 ACAAGTAAAAAATG-TAAGAATGCTCCT-ACAGATTGCTTGGAGCTTGATCCAGCATCTT 1363
|||||| || | || | ||||||||||| | || |||||||||||||||||||||| |||
Sbjct 967 ACAAGTCAAGA-TGGTGAGAATGCTCCTGA-AGGTTGCTTGGAGCTTGATCCAGCAGCTT 1024
Query 1364 TGACACATGAGCTTCTCAA-AGTTCTCACTGAGGAGGA--TGAGAGAATTGGA 1413
|| |||| ||||| ||||| | || ||||| ||||||| ||| ||||| |||
Sbjct 1025 TGCCACAAGAGCTGCTCAAGA-TTGTCACTAAGGAGGAGATGAAAGAATCGGA 1076
Score = 361 bits (195), Expect = 1e-98
Identities = 309/362 (85%), Gaps = 15/362 (4%)
Strand=Plus/Plus
Query 698 CTCTAGACTCAAAGAAGTA-CGATGCAGCGAAAAGAGTAAAGATTAATGAAACCAAGAAC 756
||| |||||| ||||| | | ||||||| |||||||||||| | |||| |||||||
Sbjct 272 CTCAAGACTCGAAGAA-AAGCAATGCAGCCAAAAGAGTAAAG--T-GCGAAAGCAAGAAC 327
Query 757 ACT-ACTCATATGGTGAAT-GAGGATGAGTATAATGTGGTGG-TAATGAGTGTGCCGGAT 813
||| || || || | || ||||| || ||| |||| ||| | |||||||| || |||
Sbjct 328 ACTAAC-GATGTGAT-TATGGAGGAGGAATATGATGTAATGGCT-ATGAGTGTTCCAGAT 384
Query 814 GCTGATTACTACAACTTCGACAAGGATCGGACTC-TAGCTTCGTTT-GGAGAAAACCAGG 871
||||||| |||||||||||| ||||||||| || |||||| ||| ||||||||||| |
Sbjct 385 GCTGATTTCTACAACTTCGAAAAGGATCGG-GTCGAAGCTTC-TTTCGGAGAAAACCAAG 442
Query 872 TATGGGCTGCTTACGATGATTACGGAATGCCTCGGTGGTATGCATTGGTCCATAAGATTG 931
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 443 TATGGGCTGCTTATGATGATTACGGAATGCCTCAGTGGTATGCATTGGTCCATAAGGTTG 502
Query 932 TCTCTCAAGAACCGTTCGAGTTGTGTATTTCTTGGCTTGATGGCAAGAATAAGGGATATA 991
| ||||||||||||||| || ||||||||||||||||||||| ||||| || ||||||
Sbjct 503 TTTCTCAAGAACCGTTCAAGACGTGTATTTCTTGGCTTGATGGAAAGAAAAATGGATATG 562
Query 992 CGGGTTCAATGAAGAAGTGGATTGATTCAGGGTATTACAAGACGAGTGGGTGCTTCACAA 1051
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 563 TGGGTTCAATGAAGAAGTGGATTGATTCAGGGTATTACAAGACGAGTGGATGCTTCTCAA 622
Query 1052 TC 1053
||
Sbjct 623 TC 624
> Ahg949571 jgi|Araly1|949571|scaffold_801458.1
Length=724
Score = 315 bits (170), Expect = 8e-85
Identities = 280/331 (85%), Gaps = 15/331 (5%)
Strand=Plus/Plus
Query 698 CTCTAGACTCAAAGAAGTA-CGATGCAGCGAAAAGAGTAAAGATTAATGAAACCAAGAAC 756
||| |||||| ||||| | | ||||||| |||||||||||| | |||| |||||||
Sbjct 322 CTCAAGACTCGAAGAA-AAGCAATGCAGCCAAAAGAGTAAAG--T-GCGAAAGCAAGAAC 377
Query 757 ACT-ACTCATATGGTGAAT-GAGGATGAGTATAATGTGGTGG-TAATGAGTGTGCCGGAT 813
||| || || || | || ||||| || ||| || | ||| | |||||||| || |||
Sbjct 378 ACTAAC-GATGTGAT-TATGGAGGAGGAATATGATTTAATGGCT-ATGAGTGTTCCAGAT 434
Query 814 GCTGATTACTACAACTTCGACAAGGATCGGACTC-TAGCTTCGTTT-GGAGAAAACCAGG 871
||||||| |||||||||||| ||||||||| || |||||| ||| ||||||||||| |
Sbjct 435 GCTGATTTCTACAACTTCGAAAAGGATCGG-GTCGAAGCTTC-TTTCGGAGAAAACCAAG 492
Query 872 TATGGGCTGCTTACGATGATTACGGAATGCCTCGGTGGTATGCATTGGTCCATAAGATTG 931
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 493 TATGGGCTGCTTATGATGATTACGGAATGCCTCGGTGGTATGCATTGGTCCATAAGGTTG 552
Query 932 TCTCTCAAGAACCGTTCGAGTTGTGTATTTCTTGGCTTGATGGCAAGAATAAGGGATATA 991
| ||||||||||||||| || ||||||||||||||||||||| ||||| || ||||||
Sbjct 553 TTTCTCAAGAACCGTTCAAGACGTGTATTTCTTGGCTTGATGGAAAGAAAAATGGATATG 612
Query 992 CGGGTTCAATGAAGAAGTGGATTGATTCAGG 1022
||||||||||||||||||||||||||||||
Sbjct 613 TGGGTTCAATGAAGAAGTGGATTGATTCAGG 643
> Ahg949600 jgi|Araly1|949600|scaffold_801487.1
Length=404
Score = 215 bits (116), Expect = 8e-55
Identities = 140/152 (92%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 1067 TTTGGGCTCTTTATGCAAATTGGTCACCATCTTGGGATATTTCAACTTCAGTAGAAGAAA 1126
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 227 TTTGGGCTCTTTATGAAAACTGGTCACCATCTTGGGATATTTCAACTTCAGTAGAAGAAA 286
Query 1127 TGAACAAGTATGATATGGTAGAAGTGCTTCAAGATTTCGATGAAGAAAGAGGTGTGACAG 1186
||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 287 TGAACAAGTATGAAATGGTAGAAGTCCTTCAAGATTTCGACGAAGAGAGAGGTGTGACAG 346
Query 1187 TTGTACCGCTAGTTAAAGTCCCAGGATTCAAA 1218
|||| || || |||||| || ||||||| |||
Sbjct 347 TTGTGCCACTTGTTAAACTCTCAGGATTTAAA 378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54545230840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5