BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G50115.1 Length=1458 Score E Sequences producing significant alignments: (Bits) Value Ahg916649 jgi|Araly1|916649|Al_scaffold_0008_1400 643 0.0 Ahg949596 jgi|Araly1|949596|scaffold_801483.1 401 6e-111 Ahg359679 jgi|Araly1|359679|fgenesh1_pg.C_scaffold_674000001 363 3e-99 Ahg949571 jgi|Araly1|949571|scaffold_801458.1 315 8e-85 Ahg949600 jgi|Araly1|949600|scaffold_801487.1 215 8e-55 > Ahg916649 jgi|Araly1|916649|Al_scaffold_0008_1400 Length=1050 Score = 643 bits (348), Expect = 0.0 Identities = 621/746 (83%), Gaps = 46/746 (6%) Strand=Plus/Plus Query 698 CTCTAGACTCAAAGAAGTA-CGATGCAGCGAAAAGAGTAAAGATTAATGAAACCAAGAAC 756 ||| |||||| ||||| | | ||||||| |||||||||||| | |||| ||||||| Sbjct 170 CTCAAGACTCGAAGAA-AAGCAATGCAGCCAAAAGAGTAAAG--T-GCGAAAGCAAGAAC 225 Query 757 ACT-ACTCATATGGTGAAT-GAGGATGAGTATAATGTGGTGG-TAATGAGTGTGCCGGAT 813 ||| || || || | || ||||| || ||| |||| ||| | |||||||| || ||| Sbjct 226 ACTAAC-GATGTGAT-TATGGAGGAGGAATATGATGTAATGGCT-ATGAGTGTTCCAGAT 282 Query 814 GCTGATTACTACAACTTCGACAAGGATCGGACTC-TAGCTTCGTTT-GGAGAAAACCAGG 871 ||||||| |||||||||||| ||||||||| || |||||| ||| ||||||||||| | Sbjct 283 GCTGATTTCTACAACTTCGAAAAGGATCGG-GTCGAAGCTTC-TTTCGGAGAAAACCAAG 340 Query 872 TATGGGCTGCTTACGATGATTACGGAATGCCTCGGTGGTATGCATTGGTCCATAAGATTG 931 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 341 TATGGGCTGCTTATGATGATTACGGAATGCCTCGGTGGTATGCATTGGTCCATAAGGTTG 400 Query 932 TCTCTCAAGAACCGTTCGAGTTGTGTATTTCTTGGCTTGATGGCAAGAATAAGGGATATA 991 | ||||||||||||||| || ||||||||||||||||||||| ||||| || |||||| Sbjct 401 TTTCTCAAGAACCGTTCAAGACGTGTATTTCTTGGCTTGATGGAAAGAAAAATGGATATG 460 Query 992 CGGGTTCAATGAAGAAGTGGATTGATTCAGG-GT--ATT--AC-A-A---GACG--A-G- 1037 |||||||||||||||||||||||||||||| || ||| || | | || | | | Sbjct 461 TGGGTTCAATGAAGAAGTGGATTGATTCAGGAGTACATTGGACGATATGTGA-GAAAGGA 519 Query 1038 TGGGTGCTTCACA-AT-CG-GGAAACGAAACGTTTGGGCTCTTTATGCAAATTGGTCACC 1094 | ||||| || | || || | ||| | || |||||||||||||||| |||||||||||| Sbjct 520 TTGGTGC-ACATATATCCGAGAAAAGGCAATGTTTGGGCTCTTTATGAAAATTGGTCACC 578 Query 1095 ATCTTGGGATATTTCAACTTCAGTAGAAGAAATGAACAAGTATGATATGGTAGAAGTGCT 1154 |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| || Sbjct 579 ATCTTGGGATATTTCAACTTCAGTAGAAGAAAAGAACAAGTATGAAATGGTAGAAGTTCT 638 Query 1155 TCAAGATTTC-GATGAAGAAAGAGGTGTGACAGTTGTACCGCTAGTTAAAGTCCCAGGAT 1213 |||||||||| | |||||| |||||||||| ||||| || ||||| |||||||||||| Sbjct 639 TCAAGATTTCAG-TGAAGAGGGAGGTGTGACCGTTGTGCCATTAGTTCAAGTCCCAGGAT 697 Query 1214 TCAAAACTGTGTTTCGTCGCCGTTCGAATCC-GAGGACATACCCAAGGAAAGAACTGTTC 1272 ||| |||||| ||||| |||| ||| || | |||||||| ||||||||| ||||||||| Sbjct 698 TCATAACTGTCTTTCGACGCC-TTCCAAAACAGAGGACATTCCCAAGGAACGAACTGTTC 756 Query 1273 AGGTTCTCGCATCAAGTTGCTTATCAATTACTTACAAGTAAAAAATG-TAAGAATGCTCC 1331 |||||||||||||| || ||| ||| || ||||||||| || | || | |||||||||| Sbjct 757 AGGTTCTCGCATCAGGTACCTTCTCATTTTCTTACAAGTCAAGA-TGGTGAGAATGCTCC 815 Query 1332 T-ACAGATTGCTTGGAGCTTGATCCAGCATCTTTGACACATGAGCTTCTCAA-AGTTCTC 1389 | | || |||||||||||||||||||||| ||||| |||| ||||| ||||| | || || Sbjct 816 TGA-AGGTTGCTTGGAGCTTGATCCAGCAGCTTTGCCACAAGAGCTGCTCAAGA-TTGTC 873 Query 1390 ACTGAGGAGGA--TGAGAGAATTGGA 1413 ||| ||||||| ||| ||||| ||| Sbjct 874 ACTAAGGAGGAGATGAAAGAATCGGA 899 > Ahg949596 jgi|Araly1|949596|scaffold_801483.1 Length=1056 Score = 401 bits (217), Expect = 6e-111 Identities = 308/351 (88%), Gaps = 10/351 (3%) Strand=Plus/Plus Query 1069 TGGGCTCTTTATGCAAATTGGTCACCATCTTGGGATATTTCAACTTCAGTAGAAGAAATG 1128 ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 635 TGGGCTCTTTATGAAAATTGGTCACCATCTTGGGATTTTTCAACTTCAGTAGAAGAAATG 694 Query 1129 AACAAGTATGATATGGTAGAAGTGCTTCAAGATTTCGATGAAGA-AAGAGGTGTGACAG- 1186 ||||||||||| ||||||||||| |||||||||||||| ||||| || ||||||| || Sbjct 695 AACAAGTATGAAATGGTAGAAGTCCTTCAAGATTTCGACGAAGAGAAC-GGTGTGA-AGG 752 Query 1187 TTGTACCGCTAGTTAAAGTCCCAGGATTCAAAACTGTGTTTCGTCGCCGTTCGAA-TCCG 1245 |||| || || |||||| || | ||||| |||||| | || ||||||| | | || || | Sbjct 753 TTGTGCCTCTTGTTAAACTCTCGGGATTTAAAACTTTATTCCGTCGCCATCC-AAGTCAG 811 Query 1246 AGGACATACCCAAGGAAAGAACTGTTCAGGTTCTCGCATCAAGTTGCTTATCAATTACTT 1305 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||| Sbjct 812 AGGACATACCCAAGGAAAGAACTATTCAGGTTCTCGCATCAAGTTGCTTATCAGTTGCTT 871 Query 1306 ACAAGTAAAAAATGTAAGAATGCTCCT-ACAGATTGCTTGGAGCTTGATCCAGCATCTTT 1364 ||| || || || || ||||||||||| || | |||||||||||||||||||||| |||| Sbjct 872 ACAGGTGAAGAAGGTGAGAATGCTCCTGACGG-TTGCTTGGAGCTTGATCCAGCAGCTTT 930 Query 1365 GACACATGAGCTTCTCAAAGTTCTCACTGAGGAGGA--TGAGAGAATTGGA 1413 ||||| ||||||||||| ||||||||||||||||| |||||||| |||| Sbjct 931 GACACCGGAGCTTCTCAAGGTTCTCACTGAGGAGGAGATGAGAGAAGTGGA 981 > Ahg359679 jgi|Araly1|359679|fgenesh1_pg.C_scaffold_674000001 Length=1227 Score = 363 bits (196), Expect = 3e-99 Identities = 303/353 (86%), Gaps = 14/353 (4%) Strand=Plus/Plus Query 1069 TGGGCTCTTTATGCAAATTGGTCACCATCTTGGGATATTTCAACTTCAGTAGAAGAAATG 1128 ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 730 TGGGCTCTTTATGAAAATTGGTCACCATCTTGGGATTTTTCAACTTCAGTAGAAGAAATG 789 Query 1129 AACAAGTATGATATGGTAGAAGTGCTTCAAGATTTC-GATGAAGAAAGAGGTGTGACAGT 1187 ||||||||||| ||||||||||| |||||||||||| | |||||| |||||||||| || Sbjct 790 AACAAGTATGAAATGGTAGAAGTTCTTCAAGATTTCAG-TGAAGATGGAGGTGTGACGGT 848 Query 1188 TGTACCGCTAGTTAAAGTCCCAGGATTCAAAACTGTGTTTCGTCGCCGTTCGAATCCG-A 1246 ||| || ||||| |||||||| |||||| |||||||||||||||| ||| || | | Sbjct 849 TGTGCCATTAGTTCAAGTCCCAAGATTCATAACTGTGTTTCGTCGCA-TTCCAAAACATA 907 Query 1247 GGACATACCCAAGGAAAGAACTGTTCAGGTTCTCGCATCAAGTTGC-TTATCAATTACTT 1305 |||||| ||||||||| ||||||||||||||||||||||| || || || ||| || ||| Sbjct 908 GGACATTCCCAAGGAACGAACTGTTCAGGTTCTCGCATCAGGT-GCCTTCTCATTTTCTT 966 Query 1306 ACAAGTAAAAAATG-TAAGAATGCTCCT-ACAGATTGCTTGGAGCTTGATCCAGCATCTT 1363 |||||| || | || | ||||||||||| | || |||||||||||||||||||||| ||| Sbjct 967 ACAAGTCAAGA-TGGTGAGAATGCTCCTGA-AGGTTGCTTGGAGCTTGATCCAGCAGCTT 1024 Query 1364 TGACACATGAGCTTCTCAA-AGTTCTCACTGAGGAGGA--TGAGAGAATTGGA 1413 || |||| ||||| ||||| | || ||||| ||||||| ||| ||||| ||| Sbjct 1025 TGCCACAAGAGCTGCTCAAGA-TTGTCACTAAGGAGGAGATGAAAGAATCGGA 1076 Score = 361 bits (195), Expect = 1e-98 Identities = 309/362 (85%), Gaps = 15/362 (4%) Strand=Plus/Plus Query 698 CTCTAGACTCAAAGAAGTA-CGATGCAGCGAAAAGAGTAAAGATTAATGAAACCAAGAAC 756 ||| |||||| ||||| | | ||||||| |||||||||||| | |||| ||||||| Sbjct 272 CTCAAGACTCGAAGAA-AAGCAATGCAGCCAAAAGAGTAAAG--T-GCGAAAGCAAGAAC 327 Query 757 ACT-ACTCATATGGTGAAT-GAGGATGAGTATAATGTGGTGG-TAATGAGTGTGCCGGAT 813 ||| || || || | || ||||| || ||| |||| ||| | |||||||| || ||| Sbjct 328 ACTAAC-GATGTGAT-TATGGAGGAGGAATATGATGTAATGGCT-ATGAGTGTTCCAGAT 384 Query 814 GCTGATTACTACAACTTCGACAAGGATCGGACTC-TAGCTTCGTTT-GGAGAAAACCAGG 871 ||||||| |||||||||||| ||||||||| || |||||| ||| ||||||||||| | Sbjct 385 GCTGATTTCTACAACTTCGAAAAGGATCGG-GTCGAAGCTTC-TTTCGGAGAAAACCAAG 442 Query 872 TATGGGCTGCTTACGATGATTACGGAATGCCTCGGTGGTATGCATTGGTCCATAAGATTG 931 ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 443 TATGGGCTGCTTATGATGATTACGGAATGCCTCAGTGGTATGCATTGGTCCATAAGGTTG 502 Query 932 TCTCTCAAGAACCGTTCGAGTTGTGTATTTCTTGGCTTGATGGCAAGAATAAGGGATATA 991 | ||||||||||||||| || ||||||||||||||||||||| ||||| || |||||| Sbjct 503 TTTCTCAAGAACCGTTCAAGACGTGTATTTCTTGGCTTGATGGAAAGAAAAATGGATATG 562 Query 992 CGGGTTCAATGAAGAAGTGGATTGATTCAGGGTATTACAAGACGAGTGGGTGCTTCACAA 1051 |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| Sbjct 563 TGGGTTCAATGAAGAAGTGGATTGATTCAGGGTATTACAAGACGAGTGGATGCTTCTCAA 622 Query 1052 TC 1053 || Sbjct 623 TC 624 > Ahg949571 jgi|Araly1|949571|scaffold_801458.1 Length=724 Score = 315 bits (170), Expect = 8e-85 Identities = 280/331 (85%), Gaps = 15/331 (5%) Strand=Plus/Plus Query 698 CTCTAGACTCAAAGAAGTA-CGATGCAGCGAAAAGAGTAAAGATTAATGAAACCAAGAAC 756 ||| |||||| ||||| | | ||||||| |||||||||||| | |||| ||||||| Sbjct 322 CTCAAGACTCGAAGAA-AAGCAATGCAGCCAAAAGAGTAAAG--T-GCGAAAGCAAGAAC 377 Query 757 ACT-ACTCATATGGTGAAT-GAGGATGAGTATAATGTGGTGG-TAATGAGTGTGCCGGAT 813 ||| || || || | || ||||| || ||| || | ||| | |||||||| || ||| Sbjct 378 ACTAAC-GATGTGAT-TATGGAGGAGGAATATGATTTAATGGCT-ATGAGTGTTCCAGAT 434 Query 814 GCTGATTACTACAACTTCGACAAGGATCGGACTC-TAGCTTCGTTT-GGAGAAAACCAGG 871 ||||||| |||||||||||| ||||||||| || |||||| ||| ||||||||||| | Sbjct 435 GCTGATTTCTACAACTTCGAAAAGGATCGG-GTCGAAGCTTC-TTTCGGAGAAAACCAAG 492 Query 872 TATGGGCTGCTTACGATGATTACGGAATGCCTCGGTGGTATGCATTGGTCCATAAGATTG 931 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 493 TATGGGCTGCTTATGATGATTACGGAATGCCTCGGTGGTATGCATTGGTCCATAAGGTTG 552 Query 932 TCTCTCAAGAACCGTTCGAGTTGTGTATTTCTTGGCTTGATGGCAAGAATAAGGGATATA 991 | ||||||||||||||| || ||||||||||||||||||||| ||||| || |||||| Sbjct 553 TTTCTCAAGAACCGTTCAAGACGTGTATTTCTTGGCTTGATGGAAAGAAAAATGGATATG 612 Query 992 CGGGTTCAATGAAGAAGTGGATTGATTCAGG 1022 |||||||||||||||||||||||||||||| Sbjct 613 TGGGTTCAATGAAGAAGTGGATTGATTCAGG 643 > Ahg949600 jgi|Araly1|949600|scaffold_801487.1 Length=404 Score = 215 bits (116), Expect = 8e-55 Identities = 140/152 (92%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 1067 TTTGGGCTCTTTATGCAAATTGGTCACCATCTTGGGATATTTCAACTTCAGTAGAAGAAA 1126 ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 227 TTTGGGCTCTTTATGAAAACTGGTCACCATCTTGGGATATTTCAACTTCAGTAGAAGAAA 286 Query 1127 TGAACAAGTATGATATGGTAGAAGTGCTTCAAGATTTCGATGAAGAAAGAGGTGTGACAG 1186 ||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||| Sbjct 287 TGAACAAGTATGAAATGGTAGAAGTCCTTCAAGATTTCGACGAAGAGAGAGGTGTGACAG 346 Query 1187 TTGTACCGCTAGTTAAAGTCCCAGGATTCAAA 1218 |||| || || |||||| || ||||||| ||| Sbjct 347 TTGTGCCACTTGTTAAACTCTCAGGATTTAAA 378 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54545230840 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5