BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50120.1
Length=1260
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495067 jgi|Araly1|495067|fgenesh2_kg.8__883__AT5G50120.1 1875 0.0
Ahg949528 jgi|Araly1|949528|scaffold_801415.1 412 2e-114
> Ahg495067 jgi|Araly1|495067|fgenesh2_kg.8__883__AT5G50120.1
Length=1251
Score = 1875 bits (1015), Expect = 0.0
Identities = 1179/1257 (94%), Gaps = 16/1257 (1%)
Strand=Plus/Plus
Query 13 TTTTTCTCTTTATATTACATCTCCAAAGGTTTGCTCATTGGTTTCAATCTTCCTTCATAA 72
|||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1 TTTTTCTCTTTATATTACCTCTCC-AAGGTTTGCTCATTGG-TTCAATCTTCCTTCATAA 58
Query 73 GCAAA-AATGATACAATTTCAAGAATCCGAAGAAGAACCAGATTTTTCTCAAGAAGATCA 131
| ||| |||||||| ||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 59 G-AAACAATGATACGATTTCAAGAATCCGAAGAAGAGCCTGATTTTTCTCAAGAAGATCA 117
Query 132 TCTAACATCTTCTTCTCAACCACTTCATCAATGTATTGCCACTCTTGTATGTCACACAGC 191
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TCTAACATCTTCTTGTCAACCACTTCATCAATGTATTGCCACTCTTGTATGTCACACAGC 177
Query 192 ATCCTACATTTCATCTCTAACTCTTGCAGGAAAGAGACTTTACACAGGCTCCAACGACGG 251
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 178 ATCCTACATTTCATCTCTAACCCTTGCAGGAAAGAGACTTTACACAGGCTCCAACGACGG 237
Query 252 GGTTGTTAGATTATGGAATGCAAACACGTTGGAAACATTAGCCGAAGCATCAAGCAACGG 311
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 238 AGTTGTTAGATTATGGAATGCAAACACGTTGGAAACATTAGCGGAAGCATCAAGCAACGG 297
Query 312 CGATGTAATAACAGGGGAGAGAGGAGGTGGAGGAGCAGTGAAATCTTTGGTAAT-CTTGG 370
||||||||||||||| ||||||||||| |||||||||||||||||||||||||| | |||
Sbjct 298 CGATGTAATAACAGGAGAGAGAGGAGGCGGAGGAGCAGTGAAATCTTTGGTAATAC-TGG 356
Query 371 CTGATAAACTCTTTACAGCACACCAAGATCATAAGATACGTGTGTGGAAGATAAACGACG 430
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CTGATAAACTATTCACAGCACACCAAGATCATAAGATACGTGTGTGGAAGATAAACGACG 416
Query 431 TCGTTGAAGAAGACGTGGGTGGTAAAAAGTACATGCATTTAGCGACGATGCCAACGATTA 490
| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 417 TTGTTGAAGAAGACGTGGGTGGTAAAAAGTACATGCATGTAGCGACGATGCCAACTATTA 476
Query 491 GCGATCGTTTTGCAAAGTGTTTGATGCCAAAGAACCAAGTTGAAATAAGGAGGCATAAGA 550
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 477 GCGATCGTTTTGCAAAGTGTTTGATGCCAAAGGACCAAGTTGAAATAAGGAGGCATAAGA 536
Query 551 AAGCTTCATGGGTTCACCATGTAGACGCGGTTTCGGGTTTAGCCTTATCAAGAGATGGAA 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 AAGCTTCATGGGTTCACCATGTAGACGCGGTTTCGGGTTTAGCCTTATCAAGAGATGGAA 596
Query 611 CACTACTCTACTCTGTCTCATGGGACAGGACGCTTAAAATCTGGCGAACCACCGATTTTA 670
| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 597 CGCTACTCTACTCTGTCTCATGGGACAGGACGCTTAAAATCTGGCGTACTTCCGATTTTA 656
Query 671 AATGCCTAGAGTCATTCACAAACGCCCACGATGATGCAATCAATGCGGTTGCATTATCCG 730
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 657 AATGCCTAGAGTCATTCACAAACGCCCATGATGATGCAATCAATGCGGTTGCATTATCCG 716
Query 731 AAAATGGTGATATATATACAGGATCTTCTGACCAAAGAATCAAAGTGTGGAGGAAGAACA 790
|||| || |||||||| ||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 717 AAAACGGAGATATATACACAGGATCTTCTGACCAGAGAATCAAAGTATGGAGGAAAAACA 776
Query 791 TCAATGAAGAGAATGT-AA-A-GAAGAAGA-G--GAAACATTCTTTAGTTGCAATATTGT 844
||||||||||||||| || | |||||||| | |||||||||||| |||||||||||||
Sbjct 777 TCAATGAAGAGAATGAGAAGAAGAAGAAGAAGAAGAAACATTCTTTGGTTGCAATATTGT 836
Query 845 CAGAACATAATTCAGGTATTAACGCATTGGCATTGAGCGGTACTAATGGCTCTCTTTTGC 904
| ||||||||||| ||||| |||||| ||||||||||||||| ||| ||| |||||||||
Sbjct 837 CGGAACATAATTCGGGTATCAACGCACTGGCATTGAGCGGTAATAACGGCACTCTTTTGC 896
Query 905 ATTCCGGTGGATCTGATGGATCGATATTGGTGTGGGAACGTGACGATGGTGGAGACATTG 964
|||| ||||||||||| ||||| ||||||||||||||| | || || |||||||||||||
Sbjct 897 ATTCGGGTGGATCTGACGGATCAATATTGGTGTGGGAAAGAGAAGAAGGTGGAGACATTG 956
Query 965 TAGTTGTTGGAATGCTTA-GAGGTCACACAGAGTCTGTTCTATGCCTCGCGGTTGTTTCG 1023
|| ||||||||||||| | |||||||||||||||||||||||||||| |||||||| |||
Sbjct 957 TACTTGTTGGAATGCT-ACGAGGTCACACAGAGTCTGTTCTATGCCTTGCGGTTGTGTCG 1015
Query 1024 GACATACTTTGTAGTGGCTCAGCAGATAAGACAGTGAGGTTGTGGAAATGTTCAGCCAAG 1083
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
Sbjct 1016 GACATACTTTGTAGTGGCTCAGCAGATAAGACAGTGAGGCTGTGGAAATGTTCAGGGACG 1075
Query 1084 GATTATTCATGCTTGGCTATGTTAGAGGGACATTTAGGACCGGTTAAGTGCTTGACAGGG 1143
|||||||| |||||||||||||| ||||||||| |||||||||||||||||||||| |||
Sbjct 1076 GATTATTCGTGCTTGGCTATGTTGGAGGGACATATAGGACCGGTTAAGTGCTTGACCGGG 1135
Query 1144 GCATTTCGTGATTCGCG-TAAAGCAGATGAGGCTTCTTATCATATTTATAGTGGAGGACT 1202
||| ||||| |||| || |||| || |||||||||||||||||||||||||||||||||
Sbjct 1136 GCAATTCGTCATTC-CGGTAAACCATCTGAGGCTTCTTATCATATTTATAGTGGAGGACT 1194
Query 1203 AGACTCTCAAGTTAAGGTTTGGCAGGTTTTGGTGCCGGCCTAATAAAAGAGTTACTT 1259
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1195 TGACTCTCAAGTTAAGGTTTGGCAGATTTTGGTGCCGACCTAATAAAAGAGTTACTT 1251
> Ahg949528 jgi|Araly1|949528|scaffold_801415.1
Length=479
Score = 412 bits (223), Expect = 2e-114
Identities = 345/401 (86%), Gaps = 19/401 (5%)
Strand=Plus/Plus
Query 369 GGCTGATAAACTCTTTACAGCACACCAAGATCATAAGATACGTGTGTGGAAGATAAACGA 428
||||||||| ||||| ||| ||||||||||| ||||||| ||||| |||||| ||| |
Sbjct 87 GGCTGATAAGCTCTTCCCAG--CACCAAGATCAAAAGATACATGTGTAGAAGAT-AACTA 143
Query 429 CGTCGTTGAAGAAGACGTGGGTGGTAAAAAGTACATGCATTTAGCGACGATGCCAACGAT 488
||||||||||||||| | ||||||||||||||||||||||||||| | |||||||| |||
Sbjct 144 CGTCGTTGAAGAAGAAGCGGGTGGTAAAAAGTACATGCATTTAGCTATGATGCCAAAGAT 203
Query 489 TAGCGATCGTTTTGCAAAGTGTTTGATGCC-AAAGAACCAAGTTGAAATAAGGAGGCATA 547
||| || ||||| ||||||| |||||||| | | |||||||| |||| ||||||||| |
Sbjct 204 TAGTGACCGTTTAGCAAAGTCATTGATGCCTATA-AACCAAGTCGAAACAAGGAGGCACA 262
Query 548 AGAAAGCTTCATGGGTTCACCATGTAGACGCGGTTTCGGGTTTAGCCTTATCAAGAGATG 607
| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 263 AAAAAGCTTCATGGGTTCACCATGTAGAAGCGGTTTCAGGTTTAGCCTTATCAAGAGATG 322
Query 608 GAACACTACTCTACTCTGTCTCATGGGACAGGACGCT-----T-AAAATCTGGCGAACCA 661
||||||| ||||| |||| ||||||||| ||||||| | ||||| |||| |||||
Sbjct 323 GAACACTCCTCTATTCTGAATCATGGGACCGGACGCTCAAACTCAAAATATGGCAAACCA 382
Query 662 CCGATTTTAAATGCCTAGAGTC-ATTCACAAACGCCCACGATGATGCAATCAATGCGGTT 720
|| ||||||||||||||||||| || ||||||| |||||||||||| |||||||||||||
Sbjct 383 CCAATTTTAAATGCCTAGAGTCCAT-CACAAACTCCCACGATGATGTAATCAATGCGGTT 441
Query 721 GCATTATCCGAAAATGGTGATATA-TATACA-GG-ATCTTC 758
| | ||||||| ||| ||||| | |||||| || ||||||
Sbjct 442 GAAGTATCCGAGAAT--TGATA-AGTATACATGGGATCTTC 479
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47081802495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5