BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G50120.1 Length=1260 Score E Sequences producing significant alignments: (Bits) Value Ahg495067 jgi|Araly1|495067|fgenesh2_kg.8__883__AT5G50120.1 1875 0.0 Ahg949528 jgi|Araly1|949528|scaffold_801415.1 412 2e-114 > Ahg495067 jgi|Araly1|495067|fgenesh2_kg.8__883__AT5G50120.1 Length=1251 Score = 1875 bits (1015), Expect = 0.0 Identities = 1179/1257 (94%), Gaps = 16/1257 (1%) Strand=Plus/Plus Query 13 TTTTTCTCTTTATATTACATCTCCAAAGGTTTGCTCATTGGTTTCAATCTTCCTTCATAA 72 |||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||| Sbjct 1 TTTTTCTCTTTATATTACCTCTCC-AAGGTTTGCTCATTGG-TTCAATCTTCCTTCATAA 58 Query 73 GCAAA-AATGATACAATTTCAAGAATCCGAAGAAGAACCAGATTTTTCTCAAGAAGATCA 131 | ||| |||||||| ||||||||||||||||||||| || |||||||||||||||||||| Sbjct 59 G-AAACAATGATACGATTTCAAGAATCCGAAGAAGAGCCTGATTTTTCTCAAGAAGATCA 117 Query 132 TCTAACATCTTCTTCTCAACCACTTCATCAATGTATTGCCACTCTTGTATGTCACACAGC 191 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 TCTAACATCTTCTTGTCAACCACTTCATCAATGTATTGCCACTCTTGTATGTCACACAGC 177 Query 192 ATCCTACATTTCATCTCTAACTCTTGCAGGAAAGAGACTTTACACAGGCTCCAACGACGG 251 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 178 ATCCTACATTTCATCTCTAACCCTTGCAGGAAAGAGACTTTACACAGGCTCCAACGACGG 237 Query 252 GGTTGTTAGATTATGGAATGCAAACACGTTGGAAACATTAGCCGAAGCATCAAGCAACGG 311 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 238 AGTTGTTAGATTATGGAATGCAAACACGTTGGAAACATTAGCGGAAGCATCAAGCAACGG 297 Query 312 CGATGTAATAACAGGGGAGAGAGGAGGTGGAGGAGCAGTGAAATCTTTGGTAAT-CTTGG 370 ||||||||||||||| ||||||||||| |||||||||||||||||||||||||| | ||| Sbjct 298 CGATGTAATAACAGGAGAGAGAGGAGGCGGAGGAGCAGTGAAATCTTTGGTAATAC-TGG 356 Query 371 CTGATAAACTCTTTACAGCACACCAAGATCATAAGATACGTGTGTGGAAGATAAACGACG 430 |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 CTGATAAACTATTCACAGCACACCAAGATCATAAGATACGTGTGTGGAAGATAAACGACG 416 Query 431 TCGTTGAAGAAGACGTGGGTGGTAAAAAGTACATGCATTTAGCGACGATGCCAACGATTA 490 | |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct 417 TTGTTGAAGAAGACGTGGGTGGTAAAAAGTACATGCATGTAGCGACGATGCCAACTATTA 476 Query 491 GCGATCGTTTTGCAAAGTGTTTGATGCCAAAGAACCAAGTTGAAATAAGGAGGCATAAGA 550 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 477 GCGATCGTTTTGCAAAGTGTTTGATGCCAAAGGACCAAGTTGAAATAAGGAGGCATAAGA 536 Query 551 AAGCTTCATGGGTTCACCATGTAGACGCGGTTTCGGGTTTAGCCTTATCAAGAGATGGAA 610 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 AAGCTTCATGGGTTCACCATGTAGACGCGGTTTCGGGTTTAGCCTTATCAAGAGATGGAA 596 Query 611 CACTACTCTACTCTGTCTCATGGGACAGGACGCTTAAAATCTGGCGAACCACCGATTTTA 670 | |||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 597 CGCTACTCTACTCTGTCTCATGGGACAGGACGCTTAAAATCTGGCGTACTTCCGATTTTA 656 Query 671 AATGCCTAGAGTCATTCACAAACGCCCACGATGATGCAATCAATGCGGTTGCATTATCCG 730 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 657 AATGCCTAGAGTCATTCACAAACGCCCATGATGATGCAATCAATGCGGTTGCATTATCCG 716 Query 731 AAAATGGTGATATATATACAGGATCTTCTGACCAAAGAATCAAAGTGTGGAGGAAGAACA 790 |||| || |||||||| ||||||||||||||||| ||||||||||| |||||||| |||| Sbjct 717 AAAACGGAGATATATACACAGGATCTTCTGACCAGAGAATCAAAGTATGGAGGAAAAACA 776 Query 791 TCAATGAAGAGAATGT-AA-A-GAAGAAGA-G--GAAACATTCTTTAGTTGCAATATTGT 844 ||||||||||||||| || | |||||||| | |||||||||||| ||||||||||||| Sbjct 777 TCAATGAAGAGAATGAGAAGAAGAAGAAGAAGAAGAAACATTCTTTGGTTGCAATATTGT 836 Query 845 CAGAACATAATTCAGGTATTAACGCATTGGCATTGAGCGGTACTAATGGCTCTCTTTTGC 904 | ||||||||||| ||||| |||||| ||||||||||||||| ||| ||| ||||||||| Sbjct 837 CGGAACATAATTCGGGTATCAACGCACTGGCATTGAGCGGTAATAACGGCACTCTTTTGC 896 Query 905 ATTCCGGTGGATCTGATGGATCGATATTGGTGTGGGAACGTGACGATGGTGGAGACATTG 964 |||| ||||||||||| ||||| ||||||||||||||| | || || ||||||||||||| Sbjct 897 ATTCGGGTGGATCTGACGGATCAATATTGGTGTGGGAAAGAGAAGAAGGTGGAGACATTG 956 Query 965 TAGTTGTTGGAATGCTTA-GAGGTCACACAGAGTCTGTTCTATGCCTCGCGGTTGTTTCG 1023 || ||||||||||||| | |||||||||||||||||||||||||||| |||||||| ||| Sbjct 957 TACTTGTTGGAATGCT-ACGAGGTCACACAGAGTCTGTTCTATGCCTTGCGGTTGTGTCG 1015 Query 1024 GACATACTTTGTAGTGGCTCAGCAGATAAGACAGTGAGGTTGTGGAAATGTTCAGCCAAG 1083 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | | Sbjct 1016 GACATACTTTGTAGTGGCTCAGCAGATAAGACAGTGAGGCTGTGGAAATGTTCAGGGACG 1075 Query 1084 GATTATTCATGCTTGGCTATGTTAGAGGGACATTTAGGACCGGTTAAGTGCTTGACAGGG 1143 |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||| ||| Sbjct 1076 GATTATTCGTGCTTGGCTATGTTGGAGGGACATATAGGACCGGTTAAGTGCTTGACCGGG 1135 Query 1144 GCATTTCGTGATTCGCG-TAAAGCAGATGAGGCTTCTTATCATATTTATAGTGGAGGACT 1202 ||| ||||| |||| || |||| || ||||||||||||||||||||||||||||||||| Sbjct 1136 GCAATTCGTCATTC-CGGTAAACCATCTGAGGCTTCTTATCATATTTATAGTGGAGGACT 1194 Query 1203 AGACTCTCAAGTTAAGGTTTGGCAGGTTTTGGTGCCGGCCTAATAAAAGAGTTACTT 1259 |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 1195 TGACTCTCAAGTTAAGGTTTGGCAGATTTTGGTGCCGACCTAATAAAAGAGTTACTT 1251 > Ahg949528 jgi|Araly1|949528|scaffold_801415.1 Length=479 Score = 412 bits (223), Expect = 2e-114 Identities = 345/401 (86%), Gaps = 19/401 (5%) Strand=Plus/Plus Query 369 GGCTGATAAACTCTTTACAGCACACCAAGATCATAAGATACGTGTGTGGAAGATAAACGA 428 ||||||||| ||||| ||| ||||||||||| ||||||| ||||| |||||| ||| | Sbjct 87 GGCTGATAAGCTCTTCCCAG--CACCAAGATCAAAAGATACATGTGTAGAAGAT-AACTA 143 Query 429 CGTCGTTGAAGAAGACGTGGGTGGTAAAAAGTACATGCATTTAGCGACGATGCCAACGAT 488 ||||||||||||||| | ||||||||||||||||||||||||||| | |||||||| ||| Sbjct 144 CGTCGTTGAAGAAGAAGCGGGTGGTAAAAAGTACATGCATTTAGCTATGATGCCAAAGAT 203 Query 489 TAGCGATCGTTTTGCAAAGTGTTTGATGCC-AAAGAACCAAGTTGAAATAAGGAGGCATA 547 ||| || ||||| ||||||| |||||||| | | |||||||| |||| ||||||||| | Sbjct 204 TAGTGACCGTTTAGCAAAGTCATTGATGCCTATA-AACCAAGTCGAAACAAGGAGGCACA 262 Query 548 AGAAAGCTTCATGGGTTCACCATGTAGACGCGGTTTCGGGTTTAGCCTTATCAAGAGATG 607 | |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 263 AAAAAGCTTCATGGGTTCACCATGTAGAAGCGGTTTCAGGTTTAGCCTTATCAAGAGATG 322 Query 608 GAACACTACTCTACTCTGTCTCATGGGACAGGACGCT-----T-AAAATCTGGCGAACCA 661 ||||||| ||||| |||| ||||||||| ||||||| | ||||| |||| ||||| Sbjct 323 GAACACTCCTCTATTCTGAATCATGGGACCGGACGCTCAAACTCAAAATATGGCAAACCA 382 Query 662 CCGATTTTAAATGCCTAGAGTC-ATTCACAAACGCCCACGATGATGCAATCAATGCGGTT 720 || ||||||||||||||||||| || ||||||| |||||||||||| ||||||||||||| Sbjct 383 CCAATTTTAAATGCCTAGAGTCCAT-CACAAACTCCCACGATGATGTAATCAATGCGGTT 441 Query 721 GCATTATCCGAAAATGGTGATATA-TATACA-GG-ATCTTC 758 | | ||||||| ||| ||||| | |||||| || |||||| Sbjct 442 GAAGTATCCGAGAAT--TGATA-AGTATACATGGGATCTTC 479 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47081802495 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5