BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G50130.1 Length=1281 Score E Sequences producing significant alignments: (Bits) Value Ahg495070 jgi|Araly1|495070|fgenesh2_kg.8__886__AT5G50130.1 1694 0.0 > Ahg495070 jgi|Araly1|495070|fgenesh2_kg.8__886__AT5G50130.1 Length=1082 Score = 1694 bits (917), Expect = 0.0 Identities = 1029/1084 (95%), Gaps = 3/1084 (0%) Strand=Plus/Plus Query 4 AGCTACAAAATCTTCTCATTCGATTTTCTCTCTTTATTTCTCTCTCTAATGAAGGGAACT 63 ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct 1 AGCTACAAAATCTTCTCATTCGATTATCTCTCTTTATTTCT-TCTCTAATGAAGGGAACT 59 Query 64 CTAAGATACTTAGCAGGAATCGCTGGGCCAAATGGGTTTGGCTCAAGATCCACAGCTGAA 123 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 60 CTAAGATACTTAGCAGGAATAGCAGGGCCAAATGGGTTTGGCTCAAGATCCACAGCTGAA 119 Query 124 CAAGTTACACAACATAGCTTTTTTCCTTGTTCACATCTCACTGCCATAATCACTGGAGGA 183 |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 120 CAAGTTACACAATATAGCTTTTTTCCTTGTTCAAATCTCACTGCCATAATCACTGGAGGA 179 Query 184 ACGTCTGGGATCGGTGCGGAAACTGCGAGAGTGTTAGCAAAAAGAGGGGTGAGAGTAGTG 243 ||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||| Sbjct 180 ACGTCTGGGATCGGTGCGGAAACAGCGAGAGTCTTAGCAAAAAGAGGGGTGAGACTAGTG 239 Query 244 ATGGCAGTAAGAGATATGAAGAAAGCAGAAATGGTGAAGGAGAGAATAATAAGAGAGAAT 303 |||||||||||||||||||| |||||||||||||| |||||||||||| | ||||||||| Sbjct 240 ATGGCAGTAAGAGATATGAAAAAAGCAGAAATGGTAAAGGAGAGAATATTGAGAGAGAAT 299 Query 304 CCAGAAGCTGACATTATATTATTCGAGATTGATCTGAGCTCTCTATCTTCCGTTGCCAGA 363 |||||||||||||||| ||| || ||||||||||| |||||||| ||||||||||| ||| Sbjct 300 CCAGAAGCTGACATTAAATTGTTTGAGATTGATCTCAGCTCTCTCTCTTCCGTTGCAAGA 359 Query 364 TTCTGCTCTCAATTTCTTTCCCAAGATCTTCCCCTCAACATACTCATAAACAACGCAGGA 423 ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 360 TTCTGCTCTCAGTTTCTTTCCCAAGATCTTCCCCTCAACATTCTCATAAACAATGCAGGG 419 Query 424 GTTTTCTCTCCAAATCTTGAATTCTCCGAAGAAAAGATTGAGCTGACATTTGCTACAAAC 483 |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 420 GTTTTCTCTCCAGATCTTGAATTTTCCGAAGAAAAGATTGAGCTGACATTTGCTACAAAC 479 Query 484 TTTTTAGGACATTACTTATTAACAGAAATGCTGATAGAGAAAATGATAGATACGGCAGAG 543 |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 480 TTTTTAGGACATTACTTATTAACAGAAATGCTGATAGAGAAAATGATAGACACCGCAGAG 539 Query 544 AAGAGTGGAATCGAAGGACGAATCATTAACCTTTCCTCTGTGATTCACAATTGGGTCAAG 603 |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| Sbjct 540 AAGAGTGGAATCGAAGGACGAATCATTAACCTTTCCTCAGTGATTCACAGTTGGGTCAAG 599 Query 604 CCTGATTGTTTCTCCTTCCCTAAATTGCTCCATCCCATTAGTAGGTATAACGGGACAAGG 663 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 600 CCTGATTGTTTCTCCTTCCCTAAATTACTCCATCCCATTAGTAGGTATAACGGGACAAGG 659 Query 664 GCATATGCTCAGTCAAAGTTGGCTACAATTTTACATGCGAAAGCGTTGAGCAAGCAATTA 723 || |||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 660 GCTTATGCTCACTCAAAGTTGGCCACAATTTTACATGCCAAAGCGTTGAGCAAGCAATTA 719 Query 724 AAGGACAGGAATGCAAACGTGACGATAAATGCAGTCCATCCAGGAATTGTTAAAACTGGA 783 |||||||| |||||||| || ||||||||||| |||||||||||||| |||||||||||| Sbjct 720 AAGGACAGAAATGCAAATGTCACGATAAATGCGGTCCATCCAGGAATCGTTAAAACTGGA 779 Query 784 ATTATCAGAGCACACAAGGGTCTTTTTACAGATTCTCTGTTTTTGATAGCTTCGAAGCTG 843 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 ATTATCAGAGCACACAAGGGTCTTTTTACAGATTCTCTGTTTTTGATAGCTTCGAAGCTG 839 Query 844 CTAAAATCTATAAGCCAGGGCGCAGCTACAACATGTTATGTGGCATTGAGCAACGAAACC 903 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 CTAAAATCTATAAGCCAGGGCGCAGCTACAACATGTTATGTGGCATTGAGCAACGAAACC 899 Query 904 AAAGGGTTAAGTGGAAAGTATTTTGCAGACTGCAATGAGACC-AATTGCTCAGATTTAGC 962 |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 900 AAAGGGTTAAGTGGAAAGTATTTTGCAGACTGCAATGAGACCGAAA-GCTCAGATTTAGC 958 Query 963 GAATGATGAGTATGTGGCTCTCAAGCTCTGCACCCAAAGCCGTGCCTTAATCCATGATCA 1022 ||||||||||| ||||||| ||||||| |||||||| || | |||||||||||||||| | Sbjct 959 GAATGATGAGTCTGTGGCTTTCAAGCTATGCACCCACAGTCATGCCTTAATCCATGATTA 1018 Query 1023 TTTGCATGAATTTCAAATACATGCCCTTCCTAATTTATGTTTTTTGTAAATCATCTTAAT 1082 ||||||| ||| ||||||||| ||||||||||||||||| || |||||||||||||||| Sbjct 1019 TTTGCATCAATCGCAAATACATTCCCTTCCTAATTTATGTCTTATGTAAATCATCTTAAT 1078 Query 1083 AATT 1086 |||| Sbjct 1079 AATT 1082 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47882383752 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5