BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50130.1
Length=1281
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495070 jgi|Araly1|495070|fgenesh2_kg.8__886__AT5G50130.1 1694 0.0
> Ahg495070 jgi|Araly1|495070|fgenesh2_kg.8__886__AT5G50130.1
Length=1082
Score = 1694 bits (917), Expect = 0.0
Identities = 1029/1084 (95%), Gaps = 3/1084 (0%)
Strand=Plus/Plus
Query 4 AGCTACAAAATCTTCTCATTCGATTTTCTCTCTTTATTTCTCTCTCTAATGAAGGGAACT 63
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1 AGCTACAAAATCTTCTCATTCGATTATCTCTCTTTATTTCT-TCTCTAATGAAGGGAACT 59
Query 64 CTAAGATACTTAGCAGGAATCGCTGGGCCAAATGGGTTTGGCTCAAGATCCACAGCTGAA 123
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 60 CTAAGATACTTAGCAGGAATAGCAGGGCCAAATGGGTTTGGCTCAAGATCCACAGCTGAA 119
Query 124 CAAGTTACACAACATAGCTTTTTTCCTTGTTCACATCTCACTGCCATAATCACTGGAGGA 183
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 120 CAAGTTACACAATATAGCTTTTTTCCTTGTTCAAATCTCACTGCCATAATCACTGGAGGA 179
Query 184 ACGTCTGGGATCGGTGCGGAAACTGCGAGAGTGTTAGCAAAAAGAGGGGTGAGAGTAGTG 243
||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||
Sbjct 180 ACGTCTGGGATCGGTGCGGAAACAGCGAGAGTCTTAGCAAAAAGAGGGGTGAGACTAGTG 239
Query 244 ATGGCAGTAAGAGATATGAAGAAAGCAGAAATGGTGAAGGAGAGAATAATAAGAGAGAAT 303
|||||||||||||||||||| |||||||||||||| |||||||||||| | |||||||||
Sbjct 240 ATGGCAGTAAGAGATATGAAAAAAGCAGAAATGGTAAAGGAGAGAATATTGAGAGAGAAT 299
Query 304 CCAGAAGCTGACATTATATTATTCGAGATTGATCTGAGCTCTCTATCTTCCGTTGCCAGA 363
|||||||||||||||| ||| || ||||||||||| |||||||| ||||||||||| |||
Sbjct 300 CCAGAAGCTGACATTAAATTGTTTGAGATTGATCTCAGCTCTCTCTCTTCCGTTGCAAGA 359
Query 364 TTCTGCTCTCAATTTCTTTCCCAAGATCTTCCCCTCAACATACTCATAAACAACGCAGGA 423
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 360 TTCTGCTCTCAGTTTCTTTCCCAAGATCTTCCCCTCAACATTCTCATAAACAATGCAGGG 419
Query 424 GTTTTCTCTCCAAATCTTGAATTCTCCGAAGAAAAGATTGAGCTGACATTTGCTACAAAC 483
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 420 GTTTTCTCTCCAGATCTTGAATTTTCCGAAGAAAAGATTGAGCTGACATTTGCTACAAAC 479
Query 484 TTTTTAGGACATTACTTATTAACAGAAATGCTGATAGAGAAAATGATAGATACGGCAGAG 543
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 480 TTTTTAGGACATTACTTATTAACAGAAATGCTGATAGAGAAAATGATAGACACCGCAGAG 539
Query 544 AAGAGTGGAATCGAAGGACGAATCATTAACCTTTCCTCTGTGATTCACAATTGGGTCAAG 603
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 540 AAGAGTGGAATCGAAGGACGAATCATTAACCTTTCCTCAGTGATTCACAGTTGGGTCAAG 599
Query 604 CCTGATTGTTTCTCCTTCCCTAAATTGCTCCATCCCATTAGTAGGTATAACGGGACAAGG 663
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 600 CCTGATTGTTTCTCCTTCCCTAAATTACTCCATCCCATTAGTAGGTATAACGGGACAAGG 659
Query 664 GCATATGCTCAGTCAAAGTTGGCTACAATTTTACATGCGAAAGCGTTGAGCAAGCAATTA 723
|| |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 660 GCTTATGCTCACTCAAAGTTGGCCACAATTTTACATGCCAAAGCGTTGAGCAAGCAATTA 719
Query 724 AAGGACAGGAATGCAAACGTGACGATAAATGCAGTCCATCCAGGAATTGTTAAAACTGGA 783
|||||||| |||||||| || ||||||||||| |||||||||||||| ||||||||||||
Sbjct 720 AAGGACAGAAATGCAAATGTCACGATAAATGCGGTCCATCCAGGAATCGTTAAAACTGGA 779
Query 784 ATTATCAGAGCACACAAGGGTCTTTTTACAGATTCTCTGTTTTTGATAGCTTCGAAGCTG 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ATTATCAGAGCACACAAGGGTCTTTTTACAGATTCTCTGTTTTTGATAGCTTCGAAGCTG 839
Query 844 CTAAAATCTATAAGCCAGGGCGCAGCTACAACATGTTATGTGGCATTGAGCAACGAAACC 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CTAAAATCTATAAGCCAGGGCGCAGCTACAACATGTTATGTGGCATTGAGCAACGAAACC 899
Query 904 AAAGGGTTAAGTGGAAAGTATTTTGCAGACTGCAATGAGACC-AATTGCTCAGATTTAGC 962
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 900 AAAGGGTTAAGTGGAAAGTATTTTGCAGACTGCAATGAGACCGAAA-GCTCAGATTTAGC 958
Query 963 GAATGATGAGTATGTGGCTCTCAAGCTCTGCACCCAAAGCCGTGCCTTAATCCATGATCA 1022
||||||||||| ||||||| ||||||| |||||||| || | |||||||||||||||| |
Sbjct 959 GAATGATGAGTCTGTGGCTTTCAAGCTATGCACCCACAGTCATGCCTTAATCCATGATTA 1018
Query 1023 TTTGCATGAATTTCAAATACATGCCCTTCCTAATTTATGTTTTTTGTAAATCATCTTAAT 1082
||||||| ||| ||||||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 1019 TTTGCATCAATCGCAAATACATTCCCTTCCTAATTTATGTCTTATGTAAATCATCTTAAT 1078
Query 1083 AATT 1086
||||
Sbjct 1079 AATT 1082
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47882383752
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5