BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50160.1
Length=2408
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495072 jgi|Araly1|495072|fgenesh2_kg.8__888__AT5G50160.1 3603 0.0
> Ahg495072 jgi|Araly1|495072|fgenesh2_kg.8__888__AT5G50160.1
Length=2274
Score = 3603 bits (1951), Expect = 0.0
Identities = 2162/2267 (95%), Gaps = 2/2267 (0%)
Strand=Plus/Plus
Query 15 AAAACCACTTTTCAAACATTGGAACTATCTAAGTATTGAACACAAAGATGGCCAAAGTGT 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAACCACTTTTCAAACATTGGAACTATCTAAGTATTGAACACAAAGATGGCCAAAGTGT 60
Query 75 TGACACTACTTGTTCTTCGACTACTCATGAACCTCTTACTTATCGGTTGGATTTCTCTCT 134
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGACACTACTTGTTCTCCGACTACTCATGAACCTCTTACTTATCGGTTGGATTTCTCTCT 120
Query 135 GGATCATCAAACCCACGACCATATGGATACAATCTTGGCGTCAAGCTGAAGATACCGCCA 194
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGATCATCAAACCCACGACCCTATGGATACAATCTTGGCGTCAAGCTGAAGATACCGCCA 180
Query 195 GACACACTTTCTTCGGCTATTACGGTCTCAACTTTGCCGTATTTTCATTCCCTCCTATTG 254
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 181 AACACACTTTCTTCGGCTATTACGGTCTCAACTTTGCCGTATTCTCATTTCCTCCTATTG 240
Query 255 CTCTCTCTATCGTTGGACTCATTTACTTGAGTTTACTGCCACAACATCATCATCCAACAA 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTCTCTCTATCGTTGGACTCATTTACTTGAGTTTACTGCCACAACATCATCATCCAACAA 300
Query 315 GAGGAGGGAGGGGTGCAGCTATTACTGTCTCAAGACCAGCCATTATCAATAGCTTCATTG 374
||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 GAGGAGGTAGGAGTGCAGCTATTACTGTCTCAAGACCAGCCATTGTCAATAGCTTCATTG 360
Query 375 GAATTGTGTCTTGTTTCGAGATACTTGCTCTTCTTTTGTTCCTACTCTTTCTTGCTTGGA 434
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 361 GAATTGTGTCTTGTTTCGAGATACTTGCTCTTCTTTTGTTCCTCCTCTTTCTTGCTTGGA 420
Query 435 ACTTCTATGCCCGTGTCTCTAACGACTTCAAGAAGCTGATGCCTGTCAAAACCATGAATC 494
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 ACTTCTATGCCCGCGTCTCTAACGACTTCAAGAAGCTGATGCCTGTCAAAACCCTGAATC 480
Query 495 TTAACTTATGGCAGCTTAAGTACTATAGAGTTGCTACAAGGTTTGGTCTATTAGCCGAAG 554
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 481 TTAACTTATGGCAGCTTAAGTACTATAGAGTTGCTACAAGGTTCGGTCTATTAGCCGAAG 540
Query 555 CATGTCTCTCTCTTCTTCTTTTCCCTGTCTTGAGGGGACTCTCGATGTTCCGGTTACTTA 614
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 541 CATGTCTCTCTCTTCTTCTTTTCCCTGTCTTGAGGGGACTCTCGATGTTCCGGTTACTCA 600
Query 615 ACATTGAGTTTGCAGCTTCTGTAAAATATCATGTGTGGTTCGGGACCGGTTTGATCTTCT 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACATTGAGTTTGCAGCTTCTGTAAAATATCATGTGTGGTTCGGGACCGGTTTGATCTTCT 660
Query 675 TTTCTTTGGTTCATGGTGGAAGCACTCTGTTCATATGGACTATTACTCATCACATTGAAG 734
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 661 TTTCTTTGGTTCATGGTGGAAGCACTCTGTTTATATGGACTATTACTCATCACATTGAAG 720
Query 735 AAGAGATTTGGAAATGGCAGAGAACGGGTCGGGTATATGTAGCTGGACTAATCAGCCTTG 794
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 721 AAGAGATTTGGAAATGGCAGAGAACGGGTCGGGTATATATAGCTGGACTGATCAGCCTTG 780
Query 795 TAACAGGATTACTGATGTGGATCACATCACTTCCTCAAATTCGAAGGAAAAATTTTGAAG 854
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 781 TAACAGGATTACTGATGTGGATCACATCACTTCCTCAAATTCGAAGGAAAAACTTTGAAG 840
Query 855 TTTTCTATTACACACACCATTTGTATATAGTTTTTCTTGTAGCTTTCTTGTTTCATGCCG 914
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TCTTCTATTACACACACCATTTGTATATAGTTTTTCTTGTAGCTTTCTTGTTTCATGCCG 900
Query 915 GTGATCGTCACTTCTACTGGGTCCTCCCAGGCATGTTTCTCTTTGGACTCGACAAGATAC 974
||||||||||||| |||||||| ||||| ||||| ||||| |||||||| ||||||||||
Sbjct 901 GTGATCGTCACTTTTACTGGGTGCTCCCCGGCATCTTTCTGTTTGGACTAGACAAGATAC 960
Query 975 TTCGGATTGTTCAATCACGATCTGAAAGCTGCATTCTTTCCGCCAATCTCTTCTCTTGTA 1034
|||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 961 TTCGGAGTGTTCAATCGCGATCTGAAAGCTGCGTTCTTTCCGCCAATCTCTTCTCTTGTA 1020
Query 1035 AAGCCATTGAGCTTGTCTTGCCAAAGGACCCAATGCTTAACTATGCACCATCAAGTTTTA 1094
||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||
Sbjct 1021 AAGCCATTGAGCTTGTCTTGCCAAAGGACCCAAGGCTTAACTATGCACCGTCGAGTTTTA 1080
Query 1095 TATTCTTGAACATTCCGTTGGTCTCACGGTTTCAATGGCATCCCTTTAGTATTATCTCAA 1154
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1081 TATTCTTGAACATTCCGTTGGTCTCACGGTTTCAATGGCATCCCTTTAGTATTATATCGA 1140
Query 1155 GCTCGAGTGTAGACAAACACTCATTGTCTATTATGATGAAATGTGAGGGAGATTGGACAA 1214
|||| ||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||
Sbjct 1141 GCTCTAGTGTAGACAAACACACATTGTCTATTATGATAAAATGTGAGGGGGATTGGACAA 1200
Query 1215 ATTCTGTTTATAACAAAATAGAAGAAGCGGCAAATTGTGAAAATAAGATTAACAACATAA 1274
|||| |||||||||||| |||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1201 ATTCAGTTTATAACAAAGTAGAAGAAGCGGCAAATTCTGAAAAGAAGATTAACAACATAA 1260
Query 1275 TCGTAAGAGTGGAAGGTCCTTATGGACCTGCCTCGGTAGATTTTCTCAGGTATGATAATC 1334
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CCGTAAGAGTAGAAGGTCCTTATGGACCTGCCTCGGTAGATTTTCTCAGGTATGATAATC 1320
Query 1335 TGTTTCTTGTGGCGGGAGGAATTGGGATCACACCATTTCTAAGCATTTTGAAAGAACTAG 1394
||||||||||||||||||| || ||||| || ||||||||||| |||||||| ||||| |
Sbjct 1321 TGTTTCTTGTGGCGGGAGGGATCGGGATTACGCCATTTCTAAGTATTTTGAAGGAACTCG 1380
Query 1395 CGAGCAAAAACCGACTCAAATCTCCCAAGAGAGTGCAGCTTGTGTTTGCGGTTAGGACAT 1454
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 CGTGCAAAAACCGACTCAAATCTCCCAAGAGAGTGCAGCTTGTGTTTGCGGTTAGGACAT 1440
Query 1455 TCCAAGATCTTAACATGTTGCTTCCGATAGCATCTATAATCTTTAACCCAATCTACAACT 1514
||||||||||||||||||||||||| ||| | |||||| |||||||||||||| ||||||
Sbjct 1441 TCCAAGATCTTAACATGTTGCTTCCAATATCCTCTATACTCTTTAACCCAATCCACAACT 1500
Query 1515 TAAACCTCAAGTTAAAAGTTTTTGTCACCCAAGaaaaaaaGCCTTCCAATGGTACAACAA 1574
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 1501 TAAACCTCAAGTTAAAAGTTTTTGTCACTCAAGAAAAAAAAACTTCCAATGGTACACCAA 1560
Query 1575 CACTGCAAGAGTTCTTGGCTCAATCACAAGTTCAGTCTATTCACCTCGGAACCGACGAGG 1634
|| |||||||||||||| |||||||||||||||||||||||||| || |||||||||||
Sbjct 1561 CATTGCAAGAGTTCTTGTCTCAATCACAAGTTCAGTCTATTCACTTCAAAACCGACGAGG 1620
Query 1635 ACTATTCAAGATTCCCGATTCGCGGGCCTGAAAGTTTCAGATGGCTTGCCACATTAGTCC 1694
|||||||||||||||| ||||| ||||| |||| ||||||||||||||||||||||||||
Sbjct 1621 ACTATTCAAGATTCCCAATTCGTGGGCCAGAAAATTTCAGATGGCTTGCCACATTAGTCC 1680
Query 1695 TCATAACCGTGCTTACGTTTCTCGGCTTCTTGATAGGTTTAAGCCATTTCTTTATACCTT 1754
| |||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 1681 TTATAACCGTGCTTACGTTTCTCGGCTTCTTGGTAGGTCTAAGCCATATCTTTATACCTT 1740
Query 1755 CTGAACACAAGAATCATTCAGGGGTTATGAAGTTAGCTGCTTCAGGAGCAATGAAGACAG 1814
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1741 CTGAACACAAGAATCATTCAGGGGTTATGAAGTTAGCTGCTTCTGGAGCAATGAAGACAG 1800
Query 1815 CTAAAGAAAAGGTTCCTTCATGGGTTCCAGATTTGATTATCATTGTCTCTTACGTTATAG 1874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 CTAAAGAAAAGGTTCCTTCATGGGTTCCAGATTTGATTATCATTGTCTCTTACGTTATAG 1860
Query 1875 CTATCTCAGTTGGTGGTTTCGCTGCAACTATTCTACAACGGAGACGAAAACATAAAGAAG 1934
||||| || |||||||||| |||||||| ||||| | | ||||| ||||||| | ||| |
Sbjct 1861 CTATCACAATTGGTGGTTTGGCTGCAACAATTCTTCCATGGAGAGGAAAACACAGAGAGG 1920
Query 1935 CACCAAGAATGTCTAAAGAAGTAGTAATTAAACCAGAGGAAAGAAACTTCACCGAGTTAA 1994
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1921 CACCAAGAATGTCTAAAGAAGAAGTAATTAAACCAGGGGAAAGAAACTTCACCGAGTTAA 1980
Query 1995 AACCAATTCCTATTACTGAGGAACATGAGATACATATCGGAGAAAGGCCAAAACTCGAAG 2054
||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1981 AACCAATTCCTCTTATTGAGGAACATGAGATACATACCGGAGAAAGGCCAAAACTCGAAG 2040
Query 2055 AGATAATGTCGGAGTTTGAGAAGAACTTGAGAGGATGGTCGAGTGTTGGAGTTTTAGTAT 2114
|||||||||||||||||||||||||||||||||||||||||||| | ||||| || ||||
Sbjct 2041 AGATAATGTCGGAGTTTGAGAAGAACTTGAGAGGATGGTCGAGTATAGGAGTGTTGGTAT 2100
Query 2115 GTGGACCAGAGTCAGTGAAAGAAGCTGTGGCATCAATGTGTCGCCAATGGCCTCAGTGTT 2174
|||||||||||||| ||||||||| ||||||||| ||||||||| |||||||||||||||
Sbjct 2101 GTGGACCAGAGTCAATGAAAGAAGATGTGGCATCGATGTGTCGCAAATGGCCTCAGTGTT 2160
Query 2175 TTGGAGTAGAAGATTTAAGAAGAAGCAGAATGAAGATGAATCTAAATTTTCATTCTCTTA 2234
|||||||||| |||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct 2161 TTGGAGTAGAGGATTCAGGAAGAAACAGAATGAAGATGAATCTAAATTTTCATTCTCTTA 2220
Query 2235 ATTTCAACCTCTAATCTAACAA-CATTTTCTAAGTTTGTATCGTTAG 2280
|||| |||||||||||||| || ||||||||||| ||||||||||||
Sbjct 2221 ATTTTAACCTCTAATCTAA-AAGCATTTTCTAAGATTGTATCGTTAG 2266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90730963590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5