BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50170.1
Length=3223
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495073 jgi|Araly1|495073|fgenesh2_kg.8__889__AT5G50170.1 4843 0.0
> Ahg495073 jgi|Araly1|495073|fgenesh2_kg.8__889__AT5G50170.1
Length=3158
Score = 4843 bits (2622), Expect = 0.0
Identities = 2986/3164 (94%), Gaps = 15/3164 (0%)
Strand=Plus/Plus
Query 54 ctctctcgcttctctctcAAATCGATGAGGCTCTACGTCTACATATTACAAGCCAAAGAT 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTCTCGCTTCTCTCTCAAATCGATGAGGCTCTACGTCTACATATTACAAGCCAAAGAT 60
Query 114 TTACCAGCGAAAGAGACATTCGCTAAGCTTCACGTTGGGAGACACAAGTCTAAAACGAGA 173
|||||||| |||||||||||||| |||||||||||||||| ||||||||| |||||||||
Sbjct 61 TTACCAGCCAAAGAGACATTCGCGAAGCTTCACGTTGGGAAACACAAGTCCAAAACGAGA 120
Query 174 GTCGCGAGAGATACTTCGTCACCGATCTGGAACGAGGAATTCGTTTTTCGAATCAGTGAT 233
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 GTCGCGAGAGACACTTCGTCACCGATCTGGAATGAGGAATTCGTTTTTCGAATCAGTGAC 180
Query 234 GTCGACGAAGGTGATGATGTCGTTGTATCGATTCTTCACCAT--G-AGCAGCAAGATCAT 290
|||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||
Sbjct 181 GTCGACGAAGGTGATGATGTTGTTGTATCGATTCTTCACCATGAGCAGCAGCAAGATCAT 240
Query 291 CAGTCTATTGTTT---CCACCGGTTTAATTGGTAAAGTTCGGATTCCGCTTACTTCCGTT 347
||||||||||||| ||||||| ||||||||||||||||||||||||||| |||| ||
Sbjct 241 CAGTCTATTGTTTCCACCACCGGATTAATTGGTAAAGTTCGGATTCCGCTTTGTTCCATT 300
Query 348 GCTGCTGAAGAGAATCAAACTTTGTTGCCGACTTGGTTTGTCATTGAGAAACCTAGTGAT 407
||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||
Sbjct 301 GCTGCTGAAGAGAATCAAACTTTGTTGCCGACTTGGTTTGTTATTGAGAAGCTTAGTGAT 360
Query 408 GGCAAGTTCGTTAACATTGAATGTGGGAAAATTCTTCTGAGTTTGTCTTTGCAAGGGAAA 467
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 361 GGCAAGTTCGTTAACATTGACTGTGGTAAAATTCTTCTGAGTTTGTCTTTGCAAGGGAAG 420
Query 468 TGGGAAAGTACCTCTGGTGAGAAGGTTCTTAATGATAAGCAGGATATTATTAACTTGGAA 527
||||||||||| |||||||| |||||||||||||||||||||| | ||||||||||||
Sbjct 421 TGGGAAAGTACATCTGGTGAAAAGGTTCTTAATGATAAGCAGG--A-TATTAACTTGGAG 477
Query 528 GGTGTGAAAGAACTCGAAGGATCGCCTAAAGATTTGATCTCCTCCAGAGATGGGAAACGG 587
|||||||||||||||||||||||||| ||||||||||| || || | |||||||| ||||
Sbjct 478 GGTGTGAAAGAACTCGAAGGATCGCCGAAAGATTTGATATCTTCTAAAGATGGGAGACGG 537
Query 588 CGTAAACACCATGATGGGAAGCACATAATGAAGAATATTGTGAACCACATTGACAAGCTT 647
||||||||||||||||||||||| |||||||||||| |||| ||||| ||||||||||||
Sbjct 538 CGTAAACACCATGATGGGAAGCATATAATGAAGAATTTTGTCAACCAGATTGACAAGCTT 597
Query 648 TTTCATAAGAAAGAGGAGATCTCTAAGAGACTCCATGATGAGTCTTCAGTAGGACAAAGT 707
||||||||||||||||| || |||||||| || |||||||| || || ||||| ||||
Sbjct 598 TTTCATAAGAAAGAGGAAATTTCTAAGAGGCTTCATGATGATTCATCGGTAGGTCAAACC 657
Query 708 GTAAACTCAAATTATGAGGATGCCACTGACCAATGTTCTTCCTCTGCTACTTGTACTGGC 767
|| ||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 658 GTTAACTCCAATTATGAGGATGCTACTGACAAATGTTCTTCCTCTGCTACTTGTACTGGC 717
Query 768 TTTGAGGAAGGTCTTGACCTGATGCAGTCTAGTGATAGCGAAAGAGAAGAAATGCCTGAG 827
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 718 TTTGAGGAAGGCCTTGACCTGATGCAGTCTAGTGACAGCGAAAGAGAAGAAATGCCTGAG 777
Query 828 AATCTTACA-GGGGGAGTTCTTGTTGATCAGAAATATTTAGTCTCACCCTGTGAACTTAA 886
|||||| || |||||| ||||| ||||||||||||||||||| ||||| ||||| |||||
Sbjct 778 AATCTT-CAGGGGGGAATTCTTCTTGATCAGAAATATTTAGTTTCACCTTGTGATCTTAA 836
Query 887 CAAATTTCTTTTTACGCCAAGTTCGCAATTTAGGAAAGAATTGGCTGAACTTCAAGGTCT 946
|||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 837 CAAATTTCTTTTCACGCCTAGTTCGCAATTTAGGAAAGAATTGGCGGAACTTCAAGGTCT 896
Query 947 ATCAGATGTACAGGAAGGGCCTTGGACAATGATGCAAGAAGATACTCCTCGTCTAACACG 1006
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 897 ATCGGATGTACAGGAAGGGCCTTGGACAGTGATGCAAGAAGATACTCCTCGTCTAACACG 956
Query 1007 GGTTGTTACATACATGAGAGCTGCAACGAAGATGGTCAAAGCAGTAAAAGCAACAGAAAA 1066
||||||||||||||||||||||||||| |||||||||||||| |||||||| || || ||
Sbjct 957 GGTTGTTACATACATGAGAGCTGCAACAAAGATGGTCAAAGCTGTAAAAGCTACTGAGAA 1016
Query 1067 TCAAGTTTACCGGAAAGCTAGCGGGAAGCAGTTTGCTGTATTTGTTAGTGTAAGCACACC 1126
||||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1017 TCAAGTTTATCGGAAAGCGAGCGGGAAGCAGTTTGCTGTTTTTGTTAGTGTTAGCACACC 1076
Query 1127 AGATGTTCCCTACGGAAATACCTTCAAAATAGAGTTGCTTTACAAGATACTACCTGAAAC 1186
||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1077 AGATGTTCCATATGGAAATACCTTTAAAATAGAGTTGCTTTACAAGATACTACCTGAAAC 1136
Query 1187 AGAGCCAACTGCTGGTGGGGAAGCTTCTCGACTGATCATATCATGGGGGATTCAATTTAG 1246
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1137 TGAGCCAACTGCTGGTGGGGAATCTTCTCGACTGATCATATCATGGGGGATTCAATTTAA 1196
Query 1247 TCAAAGTACTATAATGAAAGGTATGATTGAAGGAGGTGCTAGGCAAGGGCTGAAAGAAAG 1306
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1197 TCAAAGTACTATAATGAAAGGTATGATTGAAGGAGGTGCTAGGCAAGGGCTGAGAGAGAG 1256
Query 1307 CTTTGAACAATTTTCTAATCTCCTGGCTAAGACTTATAAAACTCTTGATCCGGCTGTTGT 1366
||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1257 CTTTGAACAATTTGCTAATCTCCTGGCTAAGACTTACAAAACTCTTGACCCGGCTGTTGT 1316
Query 1367 ATTGGACAAGGAGCAGGTTATAGCAACAGTGCAGTCAGAGCCAAAGACTGATTTGAAATC 1426
||||||||| || |||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1317 ATTGGACAAAGACCAGGTTATAGCAACAGTGCAGTCAGAACAAAAGACTGATTTGAAATC 1376
Query 1427 AGCTTTTCTATACTTCTGGAGTTCCTCTGTCATCTGTGCTGTTCTTTTGTCTGTATATGT 1486
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 AGCTTTTTTATACTTCTGGAGTTCCTCTGTCATCTGTGCTGTTCTTTTGTCTGTATATGT 1436
Query 1487 TGTAGTTCATATGCTGCACTGTGAGCCCAGCAAAATCCAAGGGTTTGAATTCTATGGGCT 1546
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1437 TGTAGTTCATATGCTGCACTGTGAGCCCAGCAAAATCCAAGGGTTTGAATTTTATGGCCT 1496
Query 1547 TGATTTGCCTGATAGTTTTGGAGAGCTATTCAGTAGTGGAATACTTGTTCTTCTTCTGGA 1606
|||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| ||||
Sbjct 1497 TGATTTGCCTGATAGTTTCGGAGAGCTATTAAGTAGTGGAATACTAGTTCTTCTTTTGGA 1556
Query 1607 GCGTGTTTACATAATGACTGTGCACTTCGTACAAGCTAGATTACATCGAGGAAGAGATCA 1666
||||||||| || ||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1557 GCGTGTTTATATGATGACTGTGCACTTCATACAAGCTAGATTGCATCGAGGAAGAGATCA 1616
Query 1667 GGGAGTCAAAGCAAATGGTAAGGGGTGGATTCTGACAATAGCTTTAATTAAGGGAACAAA 1726
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1617 GGAAGTCAAAGCAAATGGTAAGGGATGGATTCTGACAATAGCTTTAATTAAGGGAACAAA 1676
Query 1727 TTTGGCTTCAGTGGAAGCAACAGAGCTTTTTGATCCCTATGTTGTTTTCACTTGCAATGG 1786
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1677 TTTGGCTTCAGTGGAAGCAACAGAGCTCTTTGATCCCTATGTTGTTTTCACTTGCAATGG 1736
Query 1787 GAAAACAAGAACAAGTTCTGTCAAACTTCAAGCCCAGGATCCTCAGTGGAATGAGGTAAT 1846
|||||||||||| || ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1737 GAAAACAAGAACTAGCTCTGTCAAACTTCAAGCTCAGGATCCGCAGTGGAATGAGGTAAT 1796
Query 1847 CGAGTTTGATGCAATGGAGGAACCACCATCGGTATTAGATGTGGAGGTATTTGATTTTGA 1906
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1797 CGAGTTTGATGCAATGGAGGAACCACCATCGGTATTAGATGTAGAGGTATTTGATTTTGA 1856
Query 1907 TGGTCCATTTGACCAGGGGGCTTCTCTTGGTCATGCAGAGATCAATTTCTTGAAACATAC 1966
|||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1857 TGGTCCATTTGACCAGGGTGCTTCTCTTGGGCATGCAGAGGTCAATTTCTTGAAACATAC 1916
Query 1967 AGCCGATGAACTTGCTGACTTGAGTGTTGCTCTAGTTGGTAATCATGCTCAAGCGTCTCA 2026
|||||||||||| || |||||||||||| ||||||||||| ||||||||||||| || ||
Sbjct 1917 AGCCGATGAACTAGCGGACTTGAGTGTTCCTCTAGTTGGTCATCATGCTCAAGCCTCCCA 1976
Query 2027 GTCGAAGTTACAATTGAGAATTTTCCTGGAAAACAAGAACGGGGTTGAAACAATGAAGGA 2086
||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1977 GTCAAAGTTACAATTGCGAATTTTTCTGGAAAACAAGAACGGGGTTGAAACAATGAAGGA 2036
Query 2087 TTACTTGAGTAAGGTGGAAAAGGAAGTCGGCAAGAAGTTGAACATTCGGTCACCACAGAA 2146
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 2037 TTACTTGAGTAAGGTGGAAAAGGAAGTTGGCAAGAAGTTGAACATTCGGTCACCCCAGAA 2096
Query 2147 GAACTCTGCTTTCCAGAAACTGTTTGGTTTGCCACATGAAGAATTTCTTCTCAAAGAATA 2206
|||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 2097 GAACTCCGCTTTCCAGAAACTGTTTGGTCTGCCCCATGAAGAATTTCTTCTCAAAGAATA 2156
Query 2207 TACTTGTTACTTGAAGAGAAAACTTCCGGTGCAGGGCAAGCTCTTTCTGTCTGCTAGAAT 2266
||| |||||||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 2157 TACGTGTTACTTGAAGAGAAAACTGCCTGTGCAGGGCAAGCTTTTTCTGTCTGCTAGAAT 2216
Query 2267 TGTGGCGTTCTACTCAAATGTATTTGGACACAAGACAAAGTTTTA-TTTCCTCTGGGAAG 2325
||||||||||||||||||||| ||||||||||||||||||||||| |||| | |||||||
Sbjct 2217 TGTGGCGTTCTACTCAAATGTGTTTGGACACAAGACAAAGTTTTACTTTCTT-TGGGAAG 2275
Query 2326 ATATTGATGACATCCAAGTGCTTCCCCCAACTTTTGCTTCATTAGGAAGCCCTTTGCTAC 2385
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 2276 ATATTGATGACATCCAAGTGCTTCCCCCAACTTTTGCTTCGTTAGGAAGCCCTTTACTAC 2335
Query 2386 TCATTATTCTGAAAAAGAACCGAGGTCTTGATGCAAAGCATGGAGCTAAATCTCAGGATG 2445
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2336 TCATTATTCTGAAAAAGAACCGAGGTCTTGATGCAAAGCATGGGGCTAAATCTCAGGATG 2395
Query 2446 ATGAAGGAAGACTTTCGTTCTATTTCCAGTCATTTGTATCATTTGATGCCACCAGCAGGA 2505
||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 2396 ATGAAGGAAGACTTTGGTTCTATTTCCAGTCATTTGTGTCATTTGATGCGACCAGCAGGA 2455
Query 2506 CAATCATGGCTTTGTGGAAAACAAGGACGTTAAGTGTGGATCATAGAGCACAAATAGTAG 2565
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 2456 CAATCATGGCTTTGTGGAAAACAAGGACGTTAAGTGTAGATCATAGAGCACAAATAGCAG 2515
Query 2566 AAGAAGACCAAGATGTGGCAGATCCTTTCCTCTTGCCTGAAGCTGTTACAGTTGTTTCAG 2625
|||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||
Sbjct 2516 AAGAAGACCAAGATGTGGCAGATCCTTTCCTCTTACCTGAAGCTGGTGCAGTTGTTTCAG 2575
Query 2626 ATGCGGATGCATTAATGATGTCAAAAGTGTACACGTGTGATCTACCTTGCGATGTAGAAT 2685
|| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2576 ATACGGATGCATTAGTGATGTCAAAAGTGTACATGTGTGATCTACCTTGCGATGTAGAAT 2635
Query 2686 TAGTAATGAAGATCTTTGGTGGAGGAGAATTGGAGCGTAAGATCATGGAGAAATCTGGAT 2745
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2636 TGGTAATGAAGATCTTTGGTGGAGGAGAATTGGAGCGTAAGATCATGGAGAAATCTGGAT 2695
Query 2746 GTTTGAGTTACGCTAGTACAACATGGGAATCTAAAAAACCGGG-AGTCTACGAAAGACGG 2804
|| | |||||||| |||||||||||||||||||||||||| || | |||||||||||||
Sbjct 2696 GTCTAAGTTACGCGAGTACAACATGGGAATCTAAAAAACCAGGCA-TCTACGAAAGACGC 2754
Query 2805 CTTTCTTACAAGTATAACCACTATGTGTCTGTGTTTGGAGGTGGAGTCACATGTGCACAA 2864
||||||||||| || || ||||||||||||||||||||||| |||||||| || |||||
Sbjct 2755 CTTTCTTACAAATACAATCACTATGTGTCTGTGTTTGGAGGCGGAGTCACCTGCACACAA 2814
Query 2865 CAGAAATCTCCAGCTCCAAATGATGAAGGCTGGATCTTGAATGAAATTGTGGCTCTCCAC 2924
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2815 CAGAAATCTCCAGCTCCAAATGATGAAGGCTGGATCTTGAATGAGATTGTGGCTCTCCAC 2874
Query 2925 GATGTTCCATTCGGAGATCATTTTCGTGTTCATATAAGGTACGAGGTGAAGAAAGCAGGA 2984
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2875 GATGTTCCATTCGGAGACCATTTTCGTGTTCATATAAGGTATGAGGTGAAGAAAGCAGGA 2934
Query 2985 GTTGATTGTAAAACAAGTAAGTGTGAAGTGTATTTGAAGATCAGGTGGCTCAAAACAATA 3044
||||||||||||||||||| || || |||||| ||||||||||||||||||||||||||
Sbjct 2935 TTTGATTGTAAAACAAGTAAATGCGAGGTGTATCTGAAGATCAGGTGGCTCAAAACAATA 2994
Query 3045 AAGTTTGAGCAAAGAATTAGCAAAAGTATAATGGAGAAATTTAGGAATCGATTCAAAGTT 3104
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2995 AAGTTTGAGCAAAGAATTAGCAAAAGTATAATGGAGAAATTCAGGAATCGATTCAAAGTT 3054
Query 3105 ATATTTGATTTGTTCCAGAAAGAATCTGTTGCAAATTCATCTTTGACACTTCTCTGACGA 3164
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 3055 ATATTTGATTTGTTCCAGAAAGAATCTGTTGCAAATTCATCTTTGACACTTCTCTGACTA 3114
Query 3165 ATAAAACTATACTTGTTGTAGATCTCTTCTCATTACTCAAAATT 3208
||||||||||||||||| ||||||||||||||||| |||| |||
Sbjct 3115 ATAAAACTATACTTGTTTTAGATCTCTTCTCATTAGTCAATATT 3158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121632003308
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5