BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G50175.1 Length=625 Score E Sequences producing significant alignments: (Bits) Value Ahg495074 jgi|Araly1|495074|fgenesh2_kg.8__890__AT5G50175.1 571 2e-162 > Ahg495074 jgi|Araly1|495074|fgenesh2_kg.8__890__AT5G50175.1 Length=494 Score = 571 bits (309), Expect = 2e-162 Identities = 414/462 (90%), Gaps = 18/462 (4%) Strand=Plus/Plus Query 34 CACATTCACAAAGCTATGGATCTTTGCAAAAGTAGAGCAACAACCACCATTACTCTCTCA 93 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1 CACATTCACAAAACTATGGATCTTTGCAAAAGTAGAGCAACAACCACCGTTACTCTCTCA 60 Query 94 TGTCTCATCTTCTTTGTTTCTTCATTCTACACAATCTCCACCGCTAAATCTGTCACGAAT 153 |||||| |||||||||||||||| |||||||||||||||||||| ||||||||||| ||| Sbjct 61 TGTCTCCTCTTCTTTGTTTCTTCCTTCTACACAATCTCCACCGCGAAATCTGTCACTAAT 120 Query 154 CCGCTCTATCAACTCCTTCTGTTCATCGGCTTCTTCCTCGCTGCAGCCTTGTCGCTTGTT 213 ||||||||||||||||||||||||| || |||||| ||||||||||||||||| ||| || Sbjct 121 CCGCTCTATCAACTCCTTCTGTTCACCGCCTTCTTTCTCGCTGCAGCCTTGTCTCTTCTT 180 Query 214 TTACTGGTGGCAGCAGCACGAGCCACCATGGTTGCGTGGATAACGGTCCTCGTCTTACTG 273 |||| ||||| || ||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 181 ATACTAGTGGCGGCGGCACGAGCCACCATGGTCGCGTGGATAACTATCCTCGTCTTACTG 240 Query 274 GCCTTTTCGGGTACACGTCGCCGTGTTTTAGCGCGGAGGGGGAAGACGATCACGGCGGAC 333 |||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| Sbjct 241 GCCTTTTCGGGTACACGTCGCCGTGTTTTAGCGCGGAGAGGGAAGACAATCACCGCGGAT 300 Query 334 GTGGCGATGAGCTTGTTCAGGGTTCTGATTAGAGAAGCAAATCCTCGTGGTTAGTCTCAT 393 ||||||||| ||||||| || | |||| |||||||||| |||||||||| | Sbjct 301 GTGGCGATGTGCTTGTTTAG-------A---GAGA--CAAATCCTCGCGGTTAGTCTCGT 348 Query 394 GAAGATTGTTTGTTGTTAGAGAGTATTTACATATCACttttgtatataacaaaaatatat 453 || | ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 349 GAGGCTTGTTTGTTGTTAGAGAGTATTTTCATATCACTTTTGTATATAACAAAAATAT-- 406 Query 454 gtatttttgtgaatgatttttccccttttgtgtattta-ttt 494 || ||||||||||||||||| |||||||| ||| |||| ||| Sbjct 407 GTCTTTTTGTGAATGATTTT-CCCCTTTT-TGT-TTTAATTT 445 Score = 71.3 bits (38), Expect = 8e-12 Identities = 38/38 (100%), Gaps = 0/38 (0%) Strand=Plus/Plus Query 531 TGTGCTTTAAATGTTTATTCAATACTTCTATAGTTACA 568 |||||||||||||||||||||||||||||||||||||| Sbjct 457 TGTGCTTTAAATGTTTATTCAATACTTCTATAGTTACA 494 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22873750200 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5