BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G50175.1

Length=625
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg495074 jgi|Araly1|495074|fgenesh2_kg.8__890__AT5G50175.1          571    2e-162


> Ahg495074 jgi|Araly1|495074|fgenesh2_kg.8__890__AT5G50175.1
Length=494

 Score =  571 bits (309),  Expect = 2e-162
 Identities = 414/462 (90%), Gaps = 18/462 (4%)
 Strand=Plus/Plus

Query  34   CACATTCACAAAGCTATGGATCTTTGCAAAAGTAGAGCAACAACCACCATTACTCTCTCA  93
            |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  1    CACATTCACAAAACTATGGATCTTTGCAAAAGTAGAGCAACAACCACCGTTACTCTCTCA  60

Query  94   TGTCTCATCTTCTTTGTTTCTTCATTCTACACAATCTCCACCGCTAAATCTGTCACGAAT  153
            |||||| |||||||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct  61   TGTCTCCTCTTCTTTGTTTCTTCCTTCTACACAATCTCCACCGCGAAATCTGTCACTAAT  120

Query  154  CCGCTCTATCAACTCCTTCTGTTCATCGGCTTCTTCCTCGCTGCAGCCTTGTCGCTTGTT  213
            ||||||||||||||||||||||||| || |||||| ||||||||||||||||| ||| ||
Sbjct  121  CCGCTCTATCAACTCCTTCTGTTCACCGCCTTCTTTCTCGCTGCAGCCTTGTCTCTTCTT  180

Query  214  TTACTGGTGGCAGCAGCACGAGCCACCATGGTTGCGTGGATAACGGTCCTCGTCTTACTG  273
             |||| ||||| || ||||||||||||||||| |||||||||||  ||||||||||||||
Sbjct  181  ATACTAGTGGCGGCGGCACGAGCCACCATGGTCGCGTGGATAACTATCCTCGTCTTACTG  240

Query  274  GCCTTTTCGGGTACACGTCGCCGTGTTTTAGCGCGGAGGGGGAAGACGATCACGGCGGAC  333
            |||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| 
Sbjct  241  GCCTTTTCGGGTACACGTCGCCGTGTTTTAGCGCGGAGAGGGAAGACAATCACCGCGGAT  300

Query  334  GTGGCGATGAGCTTGTTCAGGGTTCTGATTAGAGAAGCAAATCCTCGTGGTTAGTCTCAT  393
            ||||||||| ||||||| ||       |   ||||  |||||||||| |||||||||| |
Sbjct  301  GTGGCGATGTGCTTGTTTAG-------A---GAGA--CAAATCCTCGCGGTTAGTCTCGT  348

Query  394  GAAGATTGTTTGTTGTTAGAGAGTATTTACATATCACttttgtatataacaaaaatatat  453
            || | ||||||||||||||||||||||| |||||||||||||||||||||||||||||  
Sbjct  349  GAGGCTTGTTTGTTGTTAGAGAGTATTTTCATATCACTTTTGTATATAACAAAAATAT--  406

Query  454  gtatttttgtgaatgatttttccccttttgtgtattta-ttt  494
            || ||||||||||||||||| |||||||| ||| |||| |||
Sbjct  407  GTCTTTTTGTGAATGATTTT-CCCCTTTT-TGT-TTTAATTT  445


 Score = 71.3 bits (38),  Expect = 8e-12
 Identities = 38/38 (100%), Gaps = 0/38 (0%)
 Strand=Plus/Plus

Query  531  TGTGCTTTAAATGTTTATTCAATACTTCTATAGTTACA  568
            ||||||||||||||||||||||||||||||||||||||
Sbjct  457  TGTGCTTTAAATGTTTATTCAATACTTCTATAGTTACA  494



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22873750200


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5