BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50180.1
Length=1778
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495075 jgi|Araly1|495075|fgenesh2_kg.8__891__AT5G50180.1 2440 0.0
> Ahg495075 jgi|Araly1|495075|fgenesh2_kg.8__891__AT5G50180.1
Length=1708
Score = 2440 bits (1321), Expect = 0.0
Identities = 1532/1626 (94%), Gaps = 45/1626 (3%)
Strand=Plus/Plus
Query 153 TCCACTGATTCATTTCTTGCTCTGCTTCTTCTCTCTTAGTTTTGTTAAGAATCTTCTCTT 212
||||||||| || |||||| ||||||||||||||||| ||||||| |||| |||||||||
Sbjct 124 TCCACTGATCCACTTCTTGTTCTGCTTCTTCTCTCTTTGTTTTGTCAAGATTCTTCTCTT 183
Query 213 ATCCATTGTGTTTTTTCTATTTTATAAATACATATATAATTTTAGTTGGGGGAGAGCTTG 272
||||| |||| ||| | | ||||||||||||||||||||||||||
Sbjct 184 ATCCA--------TTTC-----TAT---T---T-TATAATTTTAGTTGGGGGAGAGCTTG 223
Query 273 CCTGGTGTCGCCTTCTTCTCTCTCTAAGACTTGTGCTTAATTTACGGACATGTGAAGATA 332
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 224 CCTGGTGTCGCCTTCTTCTCTCTTTAAGACTTGTGCTTAATTTACGGACATGTGAGGATA 283
Query 333 CTTCGCTTTTGCCTCATCGAAGGGCATGTTAGCTATTTACTTAtctcttctcttctcttc 392
|||||||||||||||||| |||||||||||||||||||||||| |||| | || ||
Sbjct 284 CTTCGCTTTTGCCTCATCAAAGGGCATGTTAGCTATTTACTTA-----TCTC-T-TC-TC 335
Query 393 ttTGTCTTGTGAGCTCTCAAATCTTCATAGATACAAATCAAGAAAGTGATCAAAC-aaaa 451
| || | |||||||||||||| |||||||||||||||||||||| |||| ||||
Sbjct 336 --T-TC---T---CTCTCAAATCTTCAGAGATACAAATCAAGAAAGTGATAAAACGAAAA 386
Query 452 aaaGGACAAGTCTTTTTGGTATTTC-AGATCGAGAAAAAATGTGGTTGCAAGGTTTGAAG 510
||||||||||||||||| |||| || |||||| |||||||||||||||||||||||||||
Sbjct 387 AAAGGACAAGTCTTTTTTGTATCTCAAGATCGGGAAAAAATGTGGTTGCAAGGTTTGAAG 446
Query 511 TAATCTTGCAATGGATTCTTTGACTGGATTTAGAATGGAACCCAAATGGCAAATTGATCC 570
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 TAATCTTGCAATGGGTTCTTTGACTGGATTTAGAATGGAACCCAAATGGCAAATTGATCC 506
Query 571 TCAGCTTCTCTTTGTTGGTCCAAAGATTGGTGAAGGAGCTCATGCTAAAGTCTATGAGGG 630
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 507 TCAGCTTCTCTTTGTTGGGCCAAAGATTGGTGAAGGAGCTCATGCCAAAGTCTATGAGGG 566
Query 631 AAAATACAAGAATCAGACAGTTGCTATAAAGATAGTTCACAGAGGAGAAACACCAGAAGA 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 AAAATACAAGAATCAGACAGTTGCTATAAAGATAGTTCACAGAGGAGAAACACCAGAAGA 626
Query 691 GATTGCTAAAAGAGATTCAAGATTCCTTAGAGAAGTAGAAATGCTCTCACGTGTTCAACA 750
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 627 GATTGCTAAAAGAGATTCAAGATTCCTAAGAGAAGTAGAAATGCTCTCACGTGTTCAACA 686
Query 751 CAAGAATTTGGTCAAGTTCATTGGTGCTTGCAAGGAGCCTGTAATGGTGATAGTTACAGA 810
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 687 CAAGAATTTGGTCAAGTTCATTGGTGCTTGCAAGGAGCCTGTAATGGTGATAGTCACGGA 746
Query 811 ACTTCTTCAAGGCGGTACATTGCGTAAATATCTATTAAACTTGAGACCCGCATGTTTGGA 870
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 747 ACTTCTTCAAGGCGGTACATTGCGTAAATATCTGTTAAACTTGAGACCCGCATGTTTGGA 806
Query 871 GACTCGTGTGGCTATCGGTTTTGCGCTTGATATTGCTCGTGGTATGGAATGCTTGCATTC 930
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 807 GACTCGTGTGGCTATCGGTTTTGCGCTTGATATTGCTCGTGGCATGGAATGCTTGCATTC 866
Query 931 CCATGGGATCATTCACCGTGATCTCAAACCCGAGAACTTGCTTTTAACTGCAGACCATAA 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 867 CCATGGGATCATTCACCGTGATCTCAAACCCGAGAACTTGCTTTTAACTGCAGACCACAA 926
Query 991 AACAGTAAAACTAGCAGATTTTGGATTAGCAAGAGAAGAGTCACTGACTGAGATGATGAC 1050
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 927 AACAGTAAAACTAGCAGACTTTGGATTAGCAAGAGAAGAGTCACTGACTGAGATGATGAC 986
Query 1051 GGCTGAGACAGGAACATACCGATGGATGGCACCTGAGTTGTACAGCACGGTAACTCTTCG 1110
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 987 GGCTGAGACAGGAACATACCGATGGATGGCACCAGAGTTGTACAGCACGGTTACTCTTCG 1046
Query 1111 ATTGGGAGAGAAGAAGCACTACAATCATAAAGTCGACGCCTATAGCTTTGCAATAGTTCT 1170
|||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||
Sbjct 1047 ATTGGGAGAGAAGAAGCATTACAACCATAAAGTCGACGCATATAGCTTTGCAATCGTTCT 1106
Query 1171 TTGGGAGCTTTTACACAATAAATTGCCTTTTGAGGGAATGTCAAATCTCCAAGCAGCATA 1230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1107 TTGGGAGCTTTTACACAATAAATTGCCTTTTGAGGGAATGTCAAATCTCCAAGCAGCATA 1166
Query 1231 TGCAGCAGCCTTCAAAAATGTGAGACCAAGCGCGGAGAGCTTACCGGAGGAGTTGGGCGA 1290
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1167 TGCAGCCGCCTTCAAAAATGTGAGACCAAGCGCGGAGAGCTTACCAGAGGAGTTGGG-AA 1225
Query 1291 -CATTGTAACATCATGTTGGAATGAGGATCCGAATGCTCGGCCCAACTTCACGCATATCA 1349
|||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 1226 CCATTGTAACATCATGTTGGAATGAGGATCCTAATGCTCGGCCAAACTTCACACATATCA 1285
Query 1350 TTGAGTTACTTCTTAACTATCTCTCTAAAGTTGGATCTCCGATATCCGCTATTCCACAAC 1409
|||||||||| |||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct 1286 TTGAGTTACTACTTAACTATCTCTCCAAGGTTGGATCTCCGATATCCGCAATTCCACAAC 1345
Query 1410 GGATTCTTGCTTCGAAGAACACGCTATTGCCACCGGATTCTCCTGGAACTAGCTCTTTGA 1469
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1346 GGATTCTTGCTTCGAAGAACACACTATTGCCACCGGATTCTCCTGGAACTAGCTCTTTGA 1405
Query 1470 TGGCTAAGCTTGATGAATGTGGGGAAACTCCAAAGGCCAAAAGTGAAGACAAACGAAAAG 1529
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1406 TGGCTAAGCTTGATGAATGTGGGGAAACTCCAAAGGCCAAAAGTGAAGACAAACGAAAGG 1465
Query 1530 GTTTGTTTTTCTGCTTCAATCAATGTTATTAACCTTGAAATCACAGAGTGGTTTTAGGAC 1589
|||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||
Sbjct 1466 GTTTGTTTTTCTGCTTCAATCAATGTTATTAACCTT-CGAGCACAGAGTGG-TTTAGGAC 1523
Query 1590 CAGA-GATTTGGTAGACATCACTCAAATTATTCATGTAATAATATCCTCCCTACCATATG 1648
|| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1524 CA-ATGATTTGGTAGACATCACTCAAATTATTGATGTAATAATATCCTCCCTACCATATG 1582
Query 1649 AATTTAGCAAGAAGTTCATTTATATAAATAAATAGTTATGTAATTGTAATGAATTTAAAA 1708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1583 AATTTAGCAAGAAGTTCATTTATATAAATAAATAGTTATGTAATTGTAATGAATTTAAAA 1642
Query 1709 GTAGACGTAAAGAAAAAGTTTCCTAAAGAGGCTCATGTTCCCTAAATGAGAAAGTTTTAG 1768
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1643 GTAGACGTAAAGAAAAAGTTTCCTAAAGAGGCTCATGTTCCCTAAATAAGAAAGTTTTTG 1702
Query 1769 TTTTGT 1774
|| |||
Sbjct 1703 TTGTGT 1708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66734109240
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5