BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G50190.1

Length=683
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg495076 jgi|Araly1|495076|fgenesh2_kg.8__892__AT5G50190.1          147    1e-34
  Ahg491744 jgi|Araly1|491744|fgenesh2_kg.7__1177__AT4G30090.1         110    2e-23


> Ahg495076 jgi|Araly1|495076|fgenesh2_kg.8__892__AT5G50190.1
Length=642

 Score =  147 bits (79),  Expect = 1e-34
 Identities = 95/103 (92%), Gaps = 0/103 (0%)
 Strand=Plus/Plus

Query  116  AGATATCACAGAAATGGATTCCAAGCATCAAAGATGTGTATGTGACATTAACCATTTATC  175
            |||| |||||||||||||||||||||||||||||||  | ||||||||||||||||||||
Sbjct  329  AGATTTCACAGAAATGGATTCCAAGCATCAAAGATGCATTTGTGACATTAACCATTTATC  388

Query  176  TCCAACCAAAAATTCAATACTTAACCGATAAGTCCATCGAGGT  218
            || |||||||| ||||||| ||||||||||||||||| |||||
Sbjct  389  TCGAACCAAAAGTTCAATATTTAACCGATAAGTCCATGGAGGT  431


 Score =  126 bits (68),  Expect = 2e-28
 Identities = 74/77 (96%), Gaps = 0/77 (0%)
 Strand=Plus/Plus

Query  290  GAGGTAAGCCGAGTTATGACAATATGGAAACCACACTTTGAGAAAATACAAGTTGCCTTA  349
            |||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||
Sbjct  427  GAGGTAAGCCGAGTTATGACCATAGGGAAACCACACTTTGAGAAAGTACAAGTTGCCTTA  486

Query  350  GAGGCATATACTGAAAA  366
            |||||||||||||||||
Sbjct  487  GAGGCATATACTGAAAA  503


> Ahg491744 jgi|Araly1|491744|fgenesh2_kg.7__1177__AT4G30090.1
Length=1203

 Score =  110 bits (59),  Expect = 2e-23
 Identities = 93/109 (85%), Gaps = 3/109 (3%)
 Strand=Plus/Plus

Query  303  TTATGACAATATGGAAACCACACTTTGAGAAAATACAAGTTGCCTTAGAGGCATATACTG  362
            |||||||  ||  ||| |||||||| |||| | ||| ||||||||||||| |||||||||
Sbjct  602  TTATGACCTTAACGAAGCCACACTTGGAGAGAGTACTAGTTGCCTTAGAGCCATATACTG  661

Query  363  AAAACGTAAGACATGGCTTCGAA-AAGTTGGTTAACTGGAC-AAAATCT  409
            |||||||||||||||||||  || |||||||||||||  || |||||||
Sbjct  662  AAAACGTAAGACATGGCTTT-AAGAAGTTGGTTAACTCAACGAAAATCT  709



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25084879386


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5