BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50200.3
Length=952
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495077 jgi|Araly1|495077|fgenesh2_kg.8__893__AT5G50200.3 1480 0.0
> Ahg495077 jgi|Araly1|495077|fgenesh2_kg.8__893__AT5G50200.3
Length=939
Score = 1480 bits (801), Expect = 0.0
Identities = 895/941 (95%), Gaps = 3/941 (0%)
Strand=Plus/Plus
Query 1 GATACAATTACAATATGTAGAGTATCTTATAGGTGACGTAACCATGAAATATAGAATTCT 60
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1 GATACAATTAGAATATGTAGAGTATCTTGTAGGTGACGTAACCATGAAATATAGAATTGT 60
Query 61 TTGGAATCTGAAACTGAATTATTCAGTTGATAAATGATAAAACAAATACTCATATCTCAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGGAATCTGAAACTGAATTATTCAGTTGATAAATGATAAAACAAATACTCATATCTCAT 120
Query 121 CCTTTGGCATGGCGATCCAGAAGATCCTCTTTGCTTCACTTCTCATATGCTCACTGATCC 180
|||||||||||||||| || ||||||||||| |||||||||||||||||||| |||||||
Sbjct 121 CCTTTGGCATGGCGATTCACAAGATCCTCTTCGCTTCACTTCTCATATGCTCTCTGATCC 180
Query 181 AATCCATCCACGGGGCGGAAAAAGTAAGACTCTTCAAAGAGCTGGACAAAGGTGCACTTG 240
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 AATCCAGCCATGGGGCGGAAAAAGTAAGACTCTTCAAAGAGCTGGACAAAGGTGCTCTTG 240
Query 241 ATGTCACCACTAAACCCAGCCGAGAAGGACCA-GGTGTTGTTTTGGATGCCGGCAAGGAT 299
||||||||||| ||||||| ||| ||||| | |||||||||||||||||||||||||||
Sbjct 241 ATGTCACCACTCAACCCAGTCGACAAGGA-GACGGTGTTGTTTTGGATGCCGGCAAGGAT 299
Query 300 ACGTTGAACATTACATGGACGCTAAGCTCGATTGGGTCTAAAAGAGAGGCTGAATTTAAG 359
|| |||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||
Sbjct 300 ACATTGAACATTACATGGAAGCTAAGCGCTATTGGGTCTAAAAGAGAGGCTGAATTTAAG 359
Query 360 ATCATCAAAGTTAAGCTATGCTACGCTCCACCTAGCCAAGTTGACCGACCATGGCGCAAA 419
||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 360 ATCATCAAAGTAAAGCTATGCTACGCTCCACCTAGCCAACTTGACCGACCATGGCGCAAG 419
Query 420 ACCCATGACGAGCTCTTCAAAGACAAGACCTGCCCACACAAGATCATAGCCAAGCCTTAT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ACCCATGACGAGCTCTTCAAAGACAAGACCTGCCCACACAAGATCATAGCCAAGCCTTAT 479
Query 480 GACAAAACACTTCAATCAACTACTTGGACTCTTGAGCGTGACATCCCCACCGGAACCTAC 539
|||||||| | |||||||||| |||||| |||||||||||||||||||| || ||||||
Sbjct 480 GACAAAACCCCTCAATCAACTGTTTGGACCCTTGAGCGTGACATCCCCACAGGTACCTAC 539
Query 540 TTCGTTCGTGCCTACGCGGTTGATGCCATTGGCCATGAAGTTGCCTATGGACAGAGCACC 599
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTCGTTCGTGCCTACGCAGTTGATGCCATTGGCCATGAAGTTGCCTATGGACAGAGCACC 599
Query 600 GACGATGCCAAGAAAACCAATCTCTTCAGCGTTCAGGCTATCAGTGGCCGCCACGCGTCC 659
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 600 GACGATGCCAAGACAACCAATCTCTTCAGCGTTCAGGCTATCAGTGGCCGCCACACGTCC 659
Query 660 CTAGATATTGCCTCCATCTGTTTCAGTGTCTTCTCCGTCGTGGCTCTTGTCGTCTTCTTT 719
||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 660 TTAGATATTGCCTCCATCTGCTTCAGCGTCTTCTCCGTGGTGGCTCTTGTCGTCTTCTTT 719
Query 720 GTCAATGAGAAGAGGAAGGCCAAGATAGAGCAAAGCAAATGAGTCGTTTACTTTGCGTAT 779
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATAAACGAGAAGAGGAAGGCCAAGATAGAGCAAAGCAAATGAGTCGTTTACTTTGCGTAT 779
Query 780 TTGTGACGTTGAACCCaaaaaaaGTTGACTTTGAACTTTCTTGTTTACCAATTCCTTTTG 839
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 780 TTGTGACGTTGAACCCAAAAAAAGTTGACTTTGAACTT-CTTGGTTACCAATTCCTTTTG 838
Query 840 TCTTGTTGCACACTTCTTCTTTCTTATATGCTTTTATTTATGTGTTTGTACAATTAAGCC 899
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 839 TCTTGTTGCTTACTTCTTCTTTCCTATATGCTTTTATTTATGTGTTTGTACAATTAAGCC 898
Query 900 ATTGATATGGAACAAAACTAATCCTACGGTGGTGATGCGTT 940
||||||||||| |||||||||||||||||||||||||||||
Sbjct 899 ATTGATATGGAGCAAAACTAATCCTACGGTGGTGATGCGTT 939
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35339944059
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5