BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50220.1
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324165 jgi|Araly1|324165|fgenesh1_pm.C_scaffold_5001709 185 5e-46
Ahg936499 jgi|Araly1|936499|scaffold_500690.1 121 1e-26
Ahg343568 jgi|Araly1|343568|fgenesh1_pg.C_scaffold_3003331 87.9 1e-16
> Ahg324165 jgi|Araly1|324165|fgenesh1_pm.C_scaffold_5001709
Length=891
Score = 185 bits (100), Expect = 5e-46
Identities = 267/345 (77%), Gaps = 21/345 (6%)
Strand=Plus/Plus
Query 645 TTCTACGTATGTATTGTTGTGTTTTGATGTTATATCCGAGAAA-TTTGATCAGGTCGAGG 703
||||| ||| | ||| || |||||||||||| | |||||||| |||| ||| || || |
Sbjct 447 TTCTATTTATATGTTGATGAGTTTTGATGTTAGAACCGAGAAATTTTG-TCATGTTGACG 505
Query 704 CTCCAAAGACAATGATGGATCATCGATACACTT-TGATAAACTACCAAGGGAAGTTAGGA 762
||||||| ||| |||||||||| | | | || ||||||||||||||||||||||||||
Sbjct 506 CTCCAAATACATTGATGGATCA-CTTTTCGTTTCTGATAAACTACCAAGGGAAGTTAGGA 564
Query 763 TTCATGTGTTGCCAAAACCGGGTGGAAATTTGGGTTATGA-AGAATG---ATGAGAAAAA 818
||| |||||||| || | ||||||||||||||| || || ||| || |||| |
Sbjct 565 TTCGTGTGTTGCGGGAAGAGTGTGGAAATTTGGGTTC-GAGAGGATGGCCATCAGAAGAC 623
Query 819 ACAAGA-ATGGTCTAAGATATTCTTTTACGAGATGGCGGGTTTTGAGAAATGGC-ACATT 876
|||| | |||||| ||||| || ||||| ||||||| ||||||||||||||||| | ||
Sbjct 624 ACAA-ATATGGTCCAAGATTTTTTTTTATGAGATGGAGGGTTTTGAGAAATGGCGAGTTT 682
Query 877 GCCCGTGCCACTCCTAGTGGTGAGATCGTTTTTGTCAATAG-GT-TG-TTACTAAGTTGC 933
| ||| |||| | |||||||||| |||||||| || | || | || || | ||
Sbjct 683 -CTGGTGTTACTCGTGGTGGTGAGATAGTTTTTGTGAACACTGTATACTT-CTCTGATGA 740
Query 934 CAAACATTATATGTCT-ACTATTATGGTCCGAAGCGAAACAGTAT 977
||| |||| ||||| | ||||||| ||| |||||||| |||||
Sbjct 741 CAAG--TTATGTGTCTTA-TATTATGATCCAAAGCGAAATAGTAT 782
> Ahg936499 jgi|Araly1|936499|scaffold_500690.1
Length=1198
Score = 121 bits (65), Expect = 1e-26
Identities = 336/459 (73%), Gaps = 50/459 (11%)
Strand=Plus/Plus
Query 352 TCCTATACTGAGGCAGCTATATATAACCCTACCACGAGGCAGTCCCTTT--CTTTACCGG 409
||||| | || || ||||||||||||||||||||||||||||||| ||| ||| ||| |
Sbjct 431 TCCTA-A-TGTGGTAGCTATATATAACCCTACCACGAGGCAGTCC-TTTGACTT-ACCAG 486
Query 410 AAACCACGGCCGGCCAC-TCC-CATGTGAGCACTTCCTTCTTAGGATACGACCCTTTCAA 467
| | ||| | |||||| | | ||| ||||| |||||||||||| ||||
Sbjct 487 AGTTGAAATATAATCACATGTACATGTGTG-ATTTC-TTCTTCGGATACGACCCTATCAA 544
Query 468 GAATCAATACAAAGTAATATGCCTAGACAATT---A--TAAGAGGCGGTGTTGTCATGTT 522
|||||||||||||||||| | |||| ||| | | || | || ||||||| |||
Sbjct 545 GAATCAATACAAAGTAATCTTCCTAC-CAAGAGGCACCTGGGATG-GGAGTTGTCAAGTT 602
Query 523 TTCACATTGGGAGATGC--CAT-AAGGAAGTGGAGGAAAATCCAATATAACT-TTGGACT 578
||||||||||||||| | || || | |||||||||| |||||| | | | || |||
Sbjct 603 TTCACATTGGGAGATCCGACAGCAAAGCAGTGGAGGAACATCCAACACGA-TATTAGACC 661
Query 579 TTACTTTCCATTGTTACCTCCAGTTTGCATCAA-GGGAACTATCTATTACCAAGCAAA-- 635
| || | |||||| | ||||||||||| |||| |||||||||||| || ||
Sbjct 662 TCACCAGACGTTGTTAGGTGTGGTTTGCATCAACGGGA-CTATCTATTACCGAG-AAGGG 719
Query 636 AC----AATA-TGGTT--CTACGTATG-TATTG--TTG-TG--TTTTGATGTTATATCCG 682
|| ||| | || || ||| | |||| ||| || ||||||||||| | |
Sbjct 720 ACTCGCAATCCTCCTTTTCTT-GTA-GATATTAAATTGATGAGTTTTGATGTTAGGTTGG 777
Query 683 AGAAATTTGATCAGGTCGAGGCTCCAAAGACAAT-GATGGAT---CATCG--ATAC-ACT 735
||||||||||||| |||||||||||||| | || |||| || ||||| || | |||
Sbjct 778 AGAAATTTGATCATGTCGAGGCTCCAAA-AGTATTGATGCATTTGCATCGCGATTCGACT 836
Query 736 TTGATAAACTACCAAGGGAAGTTAGGATTCATGTGTTGC 774
||||| |||||||||| |||||||||| |||| | ||||
Sbjct 837 TTGATCAACTACCAAGAGAAGTTAGGACTCATCTCTTGC 875
> Ahg343568 jgi|Araly1|343568|fgenesh1_pg.C_scaffold_3003331
Length=1026
Score = 87.9 bits (47), Expect = 1e-16
Identities = 93/113 (82%), Gaps = 11/113 (10%)
Strand=Plus/Plus
Query 173 AACAATGGTCATCAATTAT-AGGCAGCAGTAGAGACTTCATAGACTCGATCGTGACTCGT 231
||||||||||| | || || | ||||| ||| ||| ||||||||||||||||||||||||
Sbjct 164 AACAATGGTCAACCATAATCA-GCAGCCGTAAAGATTTCATAGACTCGATCGTGACTCGT 222
Query 232 TCTTTGTCTCAGCC--TAGTCGTGAT-ATACTC-ATCT-CATTTTCCACCACA 279
|||||| || |||| | | |||||| || ||| | || ||| ||||||||||
Sbjct 223 TCTTTGGCTAAGCCGCT-G-CGTGATGAT-CTCCA-CTTCATCTTCCACCACA 271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39990939933
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5